Wall clock time and date at job start Mon Mar 30 2020 01:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36942 * 120.00233 * 2 1 4 4 H 1.07997 * 119.99930 * 203.04962 * 3 2 1 5 5 C 1.38812 * 119.99923 * 23.04359 * 3 2 1 6 6 N 1.31627 * 119.99857 * 12.93768 * 5 3 2 7 7 Si 1.86795 * 120.00132 * 192.94218 * 5 3 2 8 8 H 1.48502 * 109.47224 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47261 * 120.00311 * 7 5 3 10 10 H 1.48502 * 109.46869 * 240.00194 * 7 5 3 11 11 C 1.46501 * 120.00177 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47056 * 90.00037 * 11 2 1 13 13 C 1.52997 * 109.47154 * 180.02562 * 12 11 2 14 14 N 1.46500 * 109.47296 * 179.97438 * 13 12 11 15 15 C 1.34780 * 120.00079 * 180.02562 * 14 13 12 16 16 O 1.21739 * 119.99889 * 359.97438 * 15 14 13 17 17 C 1.46376 * 119.99995 * 180.27706 * 15 14 13 18 18 C 1.33973 * 119.22997 * 359.71625 * 17 15 14 19 19 O 1.35001 * 121.68763 * 180.37091 * 18 17 15 20 20 C 1.43247 * 116.76549 * 342.82057 * 19 18 17 21 21 C 1.53557 * 108.08375 * 45.48849 * 20 19 18 22 22 O 1.36211 * 119.23243 * 179.45255 * 17 15 14 23 23 H 1.09001 * 109.46616 * 275.12200 * 1 2 3 24 24 H 1.08998 * 109.46862 * 35.12606 * 1 2 3 25 25 H 1.08990 * 109.46792 * 155.12670 * 1 2 3 26 26 H 0.96990 * 119.99739 * 179.97438 * 6 5 3 27 27 H 1.08996 * 109.47066 * 329.99884 * 11 2 1 28 28 H 1.09004 * 109.47262 * 209.99917 * 11 2 1 29 29 H 1.08996 * 109.47308 * 59.99995 * 12 11 2 30 30 H 1.09004 * 109.46987 * 300.00049 * 12 11 2 31 31 H 1.09005 * 109.46978 * 60.00004 * 13 12 11 32 32 H 1.08997 * 109.47337 * 300.00191 * 13 12 11 33 33 H 0.96999 * 120.00147 * 359.97438 * 14 13 12 34 34 H 1.07998 * 119.15883 * 0.35767 * 18 17 15 35 35 H 1.09005 * 109.74282 * 165.13220 * 20 19 18 36 36 H 1.08996 * 109.74038 * 285.83972 * 20 19 18 37 37 H 1.09004 * 109.75270 * 61.47493 * 21 20 19 38 38 H 1.09004 * 109.75201 * 182.21450 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1651 1.2232 -0.3662 5 6 1.5388 2.3401 0.4706 6 7 0.4119 2.2597 1.1459 7 14 2.3158 4.0074 0.1452 8 1 3.5699 3.8264 -0.6293 9 1 1.3714 4.8507 -0.6308 10 1 2.6242 4.6704 1.4377 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7110 -1.4417 13 6 3.2170 -3.0363 -1.4412 14 7 3.4607 -3.4601 -2.8222 15 6 4.1223 -4.6084 -3.0680 16 8 4.5178 -5.2931 -2.1423 17 6 4.3710 -5.0288 -4.4478 18 6 3.9292 -4.2633 -5.4547 19 8 4.1246 -4.6072 -6.7454 20 6 5.1282 -5.5959 -7.0048 21 6 4.9423 -6.7396 -5.9971 22 8 5.0510 -6.1863 -4.6782 23 1 -0.3632 0.0918 1.0236 24 1 -0.3633 0.8405 -0.5913 25 1 -0.3632 -0.9323 -0.4322 26 1 -0.0148 3.0662 1.4750 27 1 1.6085 -2.0281 0.5147 28 1 3.1500 -1.1381 0.5143 29 1 3.0416 -0.9516 -1.9559 30 1 1.5001 -1.8416 -1.9555 31 1 2.6275 -3.7956 -0.9271 32 1 4.1694 -2.9062 -0.9273 33 1 3.1452 -2.9148 -3.5597 34 1 3.4031 -3.3478 -5.2280 35 1 5.0156 -5.9775 -8.0196 36 1 6.1182 -5.1561 -6.8840 37 1 3.9600 -7.1925 -6.1311 38 1 5.7183 -7.4907 -6.1451 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233553322.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:06 Heat of formation + Delta-G solvation = -91.098325 kcal Electronic energy + Delta-G solvation = -20268.240273 eV Core-core repulsion = 16919.015789 eV Total energy + Delta-G solvation = -3349.224484 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.12320 -40.45602 -38.14100 -37.82333 -36.23292 -34.12529 -33.07077 -31.54658 -29.77063 -27.92041 -26.97230 -26.20629 -23.84705 -22.75065 -22.04813 -20.47356 -19.43942 -19.32667 -18.69837 -17.43245 -17.07935 -16.87283 -16.59310 -16.16952 -15.84732 -15.63124 -15.41399 -15.21935 -14.96936 -14.65722 -14.52600 -14.22147 -13.41457 -13.16135 -13.02510 -12.80291 -12.61750 -12.48685 -12.26804 -12.04949 -11.99392 -11.81298 -11.70715 -11.45766 -11.06679 -10.62406 -10.25220 -9.28462 -8.75535 -7.80383 -5.29938 0.20801 1.48005 1.49320 1.57291 1.59870 2.05428 2.21989 2.52882 2.74096 3.33271 3.38781 3.66207 3.69203 3.94524 3.97693 4.14412 4.23152 4.28880 4.44618 4.48287 4.62602 4.67615 4.79888 4.82874 4.89471 4.95458 5.24309 5.31472 5.34817 5.53129 5.66721 5.74407 5.74888 6.17655 6.35816 6.51526 7.08674 7.18012 7.90291 8.33764 9.22921 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.031251 B = 0.003108 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.756521 B = 9005.867304 C = 9420.101085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.621 5.621 3 C -0.260 4.260 4 H 0.073 0.927 5 C -0.057 4.057 6 N -0.941 5.941 7 Si 0.969 3.031 8 H -0.264 1.264 9 H -0.291 1.291 10 H -0.295 1.295 11 C 0.149 3.851 12 C -0.128 4.128 13 C 0.133 3.867 14 N -0.705 5.705 15 C 0.570 3.430 16 O -0.579 6.579 17 C -0.101 4.101 18 C 0.040 3.960 19 O -0.306 6.306 20 C 0.010 3.990 21 C 0.011 3.989 22 O -0.322 6.322 23 H 0.002 0.998 24 H 0.015 0.985 25 H 0.034 0.966 26 H 0.247 0.753 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.414 0.586 34 H 0.204 0.796 35 H 0.157 0.843 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.276 -15.619 -19.169 25.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.344 5.344 3 C -0.390 4.390 4 H 0.091 0.909 5 C -0.252 4.252 6 N -0.588 5.588 7 Si 0.797 3.203 8 H -0.188 1.188 9 H -0.218 1.218 10 H -0.222 1.222 11 C 0.022 3.978 12 C -0.169 4.169 13 C 0.009 3.991 14 N -0.360 5.360 15 C 0.358 3.642 16 O -0.460 6.460 17 C -0.150 4.150 18 C -0.027 4.027 19 O -0.218 6.218 20 C -0.064 4.064 21 C -0.064 4.064 22 O -0.237 6.237 23 H 0.020 0.980 24 H 0.034 0.966 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.252 0.748 34 H 0.220 0.780 35 H 0.175 0.825 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.479 -16.014 -18.490 25.578 hybrid contribution 0.026 1.155 -0.035 1.156 sum 7.505 -14.859 -18.525 24.905 Atomic orbital electron populations 1.20551 0.82825 0.96070 0.97586 1.44169 1.02149 1.01749 1.86365 1.19584 0.98501 0.86704 1.34233 0.90886 1.25826 0.98700 1.02006 0.98654 1.70249 1.20967 1.27490 1.40136 0.85178 0.78069 0.80026 0.77018 1.18849 1.21795 1.22227 1.20779 0.95794 0.86905 0.94271 1.22179 1.00087 0.94514 1.00097 1.21268 1.00087 0.96123 0.81638 1.45760 1.57374 1.22670 1.10174 1.17536 0.77979 0.81200 0.87458 1.90817 1.52933 1.55281 1.46976 1.20167 1.09599 0.91950 0.93275 1.23524 0.99208 0.97998 0.82009 1.86114 1.55890 1.57298 1.22490 1.24060 0.91364 0.88385 1.02601 1.24040 1.05730 0.96671 0.79991 1.86406 1.67055 1.36295 1.33932 0.97981 0.96604 0.94719 0.94366 0.93201 0.93781 0.91775 0.91181 0.91510 0.92006 0.74798 0.77965 0.82527 0.89545 0.89972 0.83551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.52 8.98 127.77 1.15 9.67 16 2 N -0.62 -30.51 2.92 -726.94 -2.12 -32.63 16 3 C -0.26 -14.04 9.65 84.03 0.81 -13.23 16 4 H 0.07 3.80 7.86 -2.91 -0.02 3.77 16 5 C -0.06 -3.19 5.10 84.86 0.43 -2.76 16 6 N -0.94 -55.90 10.71 21.65 0.23 -55.67 16 7 Si 0.97 44.70 29.57 68.60 2.03 46.73 16 8 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 9 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 10 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 11 C 0.15 5.73 5.64 86.38 0.49 6.22 16 12 C -0.13 -3.83 5.65 30.59 0.17 -3.66 16 13 C 0.13 3.58 5.67 86.38 0.49 4.08 16 14 N -0.71 -16.47 5.49 -467.35 -2.56 -19.03 16 15 C 0.57 16.39 7.73 86.36 0.67 17.05 16 16 O -0.58 -22.21 16.92 10.07 0.17 -22.04 16 17 C -0.10 -2.37 6.61 23.42 0.15 -2.22 16 18 C 0.04 0.66 10.57 66.85 0.71 1.36 16 19 O -0.31 -4.54 10.47 -69.23 -0.72 -5.26 16 20 C 0.01 0.10 7.29 72.17 0.53 0.62 16 21 C 0.01 0.13 7.32 72.17 0.53 0.66 16 22 O -0.32 -7.86 10.29 -71.74 -0.74 -8.59 16 23 H 0.00 0.10 7.34 -2.39 -0.02 0.08 16 24 H 0.02 0.81 7.34 -2.39 -0.02 0.79 16 25 H 0.03 1.40 8.03 -2.39 -0.02 1.38 16 26 H 0.25 14.24 8.31 -92.72 -0.77 13.47 16 27 H 0.05 1.80 8.07 -2.39 -0.02 1.78 16 28 H 0.04 1.73 8.04 -2.38 -0.02 1.71 16 29 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.41 6.85 6.31 -92.71 -0.59 6.26 16 34 H 0.20 2.14 6.08 -2.91 -0.02 2.13 16 35 H 0.16 0.32 8.14 -2.38 -0.02 0.31 16 36 H 0.09 0.77 8.14 -2.39 -0.02 0.76 16 37 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.15 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -76.18 320.44 2.88 -73.30 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: 0.48 Total: 5.41 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 6.13 Total: 17.79 kcal Atomic # 7 Polarization: -102.87 SS G_CDS: -4.46 Total: -107.33 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -1.29 Total: -35.90 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -76.18 2.88 -73.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233553322.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.795 kcal (2) G-P(sol) polarization free energy of solvation -76.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds