Wall clock time and date at job start Mon Mar 30 2020 01:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36936 * 119.99885 * 2 1 4 4 H 1.08005 * 119.99957 * 202.35092 * 3 2 1 5 5 C 1.38814 * 120.00049 * 22.34585 * 3 2 1 6 6 N 1.31617 * 119.99837 * 11.35009 * 5 3 2 7 7 Si 1.86796 * 119.99916 * 191.34390 * 5 3 2 8 8 H 1.48493 * 109.47242 * 60.00884 * 7 5 3 9 9 H 1.48509 * 109.46742 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47300 * 300.00194 * 7 5 3 11 11 C 1.46497 * 120.00096 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.46627 * 269.99593 * 11 2 1 13 13 N 1.46507 * 109.46793 * 180.02562 * 12 11 2 14 14 C 1.34772 * 119.99523 * 180.02562 * 13 12 11 15 15 O 1.21279 * 120.00719 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99836 * 179.97438 * 14 13 12 17 17 C 1.52998 * 109.47231 * 179.97438 * 16 14 13 18 18 H 1.08996 * 110.62875 * 51.90917 * 17 16 14 19 19 C 1.54371 * 110.70144 * 288.62349 * 17 16 14 20 20 O 1.45951 * 105.06970 * 223.79176 * 19 17 16 21 21 C 1.34563 * 108.39891 * 32.44156 * 20 19 17 22 22 O 1.20829 * 125.94120 * 146.68750 * 21 20 19 23 23 C 1.51507 * 108.11349 * 326.66153 * 21 20 19 24 24 H 1.09002 * 109.46407 * 274.20635 * 1 2 3 25 25 H 1.08999 * 109.47279 * 34.20588 * 1 2 3 26 26 H 1.09001 * 109.47117 * 154.20980 * 1 2 3 27 27 H 0.97002 * 119.99942 * 179.97438 * 6 5 3 28 28 H 1.09002 * 109.47370 * 149.99579 * 11 2 1 29 29 H 1.09003 * 109.47399 * 29.99159 * 11 2 1 30 30 H 1.08996 * 109.47598 * 59.99630 * 12 11 2 31 31 H 1.08999 * 109.47136 * 299.99454 * 12 11 2 32 32 H 0.96999 * 120.00270 * 359.97438 * 13 12 11 33 33 H 1.09003 * 109.47141 * 299.99700 * 16 14 13 34 34 H 1.09002 * 109.47148 * 59.99827 * 16 14 13 35 35 H 1.08997 * 110.32013 * 342.69073 * 19 17 16 36 36 H 1.08996 * 110.31999 * 104.88943 * 19 17 16 37 37 H 1.08999 * 110.40044 * 261.59723 * 23 21 20 38 38 H 1.08997 * 110.50274 * 139.22343 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2211 -0.3557 5 6 1.5338 2.3429 0.4571 6 7 0.3842 2.2690 1.0937 7 14 2.3367 4.0047 0.1687 8 1 2.4914 4.2333 -1.2903 9 1 1.4849 5.0734 0.7500 10 1 3.6720 4.0287 0.8180 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4418 13 7 3.1857 -2.9793 1.4413 14 6 3.5223 -3.5635 2.6083 15 8 3.2188 -3.0390 3.6588 16 6 4.2758 -4.8685 2.6078 17 6 4.5310 -5.3107 4.0501 18 1 3.6031 -5.3093 4.6220 19 6 5.5897 -4.4076 4.7185 20 8 6.4730 -5.3236 5.4333 21 6 6.5364 -6.4773 4.7437 22 8 7.4982 -7.2043 4.6644 23 6 5.1916 -6.7066 4.0846 24 1 -0.3632 0.0754 1.0250 25 1 -0.3634 0.8499 -0.5777 26 1 -0.3633 -0.9253 -0.4471 27 1 -0.0460 3.0775 1.4134 28 1 3.1500 -1.1382 -0.5144 29 1 1.6084 -2.0282 -0.5146 30 1 1.5003 -1.8413 1.9557 31 1 3.0417 -0.9514 1.9559 32 1 3.4281 -3.3991 0.6011 33 1 3.6869 -5.6280 2.0935 34 1 5.2284 -4.7379 2.0943 35 1 6.1481 -3.8557 3.9625 36 1 5.1135 -3.7189 5.4164 37 1 4.5909 -7.3968 4.6769 38 1 5.3227 -7.0901 3.0728 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266267857.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:00 Heat of formation + Delta-G solvation = -99.452084 kcal Electronic energy + Delta-G solvation = -20342.764935 eV Core-core repulsion = 16993.178205 eV Total energy + Delta-G solvation = -3349.586730 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.27954 -39.50685 -37.71801 -36.16285 -34.51195 -34.17506 -31.42494 -29.59492 -28.26050 -27.00261 -25.90287 -23.39825 -21.73768 -21.51515 -20.74042 -20.07061 -17.67410 -17.08273 -16.84082 -16.65397 -16.44326 -15.75598 -15.42948 -14.79807 -14.46089 -14.05676 -13.87147 -13.76505 -13.46952 -13.11240 -12.85187 -12.47834 -12.34083 -12.17776 -11.66997 -11.54213 -11.26196 -10.93019 -10.89127 -10.81978 -10.65816 -10.48153 -10.34722 -10.06860 -9.97403 -9.71806 -8.75897 -8.60897 -6.88290 -5.79719 -3.27357 1.63520 2.71026 3.13787 3.23775 3.36098 3.41200 3.41928 3.69394 3.97214 4.22171 4.38144 4.46262 4.79670 4.92227 4.99695 5.09790 5.22356 5.29008 5.35312 5.47119 5.57280 5.71314 5.79617 5.89246 6.19745 6.41957 6.58259 6.63982 6.66540 6.88721 7.13401 7.31172 7.65223 7.67872 7.74553 8.30449 8.36279 9.15468 9.77415 10.25202 11.25277 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033244 B = 0.003160 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.047654 B = 8857.400158 C = 9255.576975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.596 5.596 3 C -0.263 4.263 4 H 0.070 0.930 5 C 0.005 3.995 6 N -0.906 5.906 7 Si 0.908 3.092 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.144 3.856 12 C 0.093 3.907 13 N -0.723 5.723 14 C 0.503 3.497 15 O -0.542 6.542 16 C -0.137 4.137 17 C -0.105 4.105 18 H 0.111 0.889 19 C 0.063 3.937 20 O -0.355 6.355 21 C 0.485 3.515 22 O -0.455 6.455 23 C -0.184 4.184 24 H 0.030 0.970 25 H 0.047 0.953 26 H -0.002 1.002 27 H 0.255 0.745 28 H 0.048 0.952 29 H 0.042 0.958 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.396 0.604 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.073 -16.741 1.401 17.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.319 5.319 3 C -0.393 4.393 4 H 0.087 0.913 5 C -0.194 4.194 6 N -0.550 5.550 7 Si 0.737 3.263 8 H -0.210 1.210 9 H -0.215 1.215 10 H -0.208 1.208 11 C 0.015 3.985 12 C -0.032 4.032 13 N -0.374 5.374 14 C 0.288 3.712 15 O -0.420 6.420 16 C -0.177 4.177 17 C -0.124 4.124 18 H 0.130 0.870 19 C -0.011 4.011 20 O -0.272 6.272 21 C 0.325 3.675 22 O -0.338 6.338 23 C -0.222 4.222 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.016 0.984 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.229 0.771 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.264 -16.443 2.356 17.753 hybrid contribution 0.295 0.798 -0.489 0.982 sum 6.560 -15.645 1.867 17.067 Atomic orbital electron populations 1.20856 0.82126 0.95774 0.99494 1.43916 1.02070 1.00336 1.85565 1.19175 0.98170 0.85251 1.36670 0.91261 1.25069 0.97618 0.98719 0.98010 1.70054 1.17742 1.27442 1.39754 0.86292 0.78586 0.83487 0.77894 1.20978 1.21539 1.20838 1.20994 0.96352 0.88955 0.92159 1.22562 0.95728 0.82724 1.02225 1.46228 1.57987 1.25341 1.07866 1.20498 0.80011 0.86312 0.84391 1.90725 1.54860 1.65201 1.31168 1.21818 1.02207 0.96635 0.97083 1.22168 1.00691 0.92811 0.96758 0.87040 1.24243 0.88946 0.90773 0.97093 1.87309 1.66071 1.26680 1.47176 1.23316 0.88817 0.80348 0.75042 1.90706 1.38106 1.48909 1.56049 1.23034 0.95333 0.99359 1.04518 0.95207 0.93393 0.98389 0.93516 0.93354 0.94012 0.92142 0.91271 0.77102 0.87843 0.88495 0.89799 0.86039 0.86431 0.86997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.87 9.01 59.85 0.54 4.41 16 2 N -0.60 -14.40 2.93 -181.11 -0.53 -14.93 16 3 C -0.26 -7.02 9.67 -15.06 -0.15 -7.17 16 4 H 0.07 1.79 7.84 -52.48 -0.41 1.38 16 5 C 0.00 0.13 5.13 -17.43 -0.09 0.04 16 6 N -0.91 -26.00 10.58 55.49 0.59 -25.41 16 7 Si 0.91 21.47 29.57 -169.99 -5.03 16.45 16 8 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 11 C 0.14 2.66 5.82 -4.04 -0.02 2.64 16 12 C 0.09 1.67 6.00 -4.03 -0.02 1.64 16 13 N -0.72 -9.14 5.56 -60.29 -0.33 -9.48 16 14 C 0.50 6.22 7.66 -10.99 -0.08 6.14 16 15 O -0.54 -9.04 15.27 5.56 0.08 -8.96 16 16 C -0.14 -0.98 4.90 -27.88 -0.14 -1.11 16 17 C -0.11 -0.80 2.75 -89.13 -0.25 -1.05 16 18 H 0.11 0.91 7.88 -51.93 -0.41 0.50 16 19 C 0.06 0.59 6.61 37.88 0.25 0.84 16 20 O -0.35 -4.04 11.17 -39.73 -0.44 -4.48 16 21 C 0.48 5.19 8.50 36.40 0.31 5.50 16 22 O -0.46 -6.39 18.00 -18.32 -0.33 -6.72 16 23 C -0.18 -1.20 6.61 -26.71 -0.18 -1.37 16 24 H 0.03 0.77 7.42 -51.93 -0.39 0.39 16 25 H 0.05 1.23 7.19 -51.93 -0.37 0.86 16 26 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 27 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.05 0.85 8.03 -51.93 -0.42 0.43 16 29 H 0.04 0.68 7.86 -51.93 -0.41 0.27 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 32 H 0.40 3.60 8.47 -40.82 -0.35 3.26 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.53 7.96 -51.93 -0.41 0.12 16 35 H 0.08 0.73 7.69 -51.93 -0.40 0.34 16 36 H 0.12 1.21 8.07 -51.93 -0.42 0.79 16 37 H 0.12 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.11 0.53 7.74 -51.93 -0.40 0.13 16 LS Contribution 321.94 15.07 4.85 4.85 Total: -1.00 -33.66 321.94 -6.58 -40.24 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -5.62 Total: -2.07 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: 0.17 Total: 10.51 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: -0.28 Total: -49.82 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.69 Total: -20.16 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.66 -6.58 -40.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266267857.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.211 kcal (2) G-P(sol) polarization free energy of solvation -33.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds