Wall clock time and date at job start Mon Mar 30 2020 01:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86807 * 119.99735 * 2 1 4 4 H 1.48500 * 109.46855 * 269.99807 * 3 2 1 5 5 H 1.48491 * 109.47146 * 29.99920 * 3 2 1 6 6 H 1.48496 * 109.46871 * 150.00114 * 3 2 1 7 7 C 1.38802 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00505 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00145 * 359.97438 * 7 2 1 10 10 C 1.47067 * 136.05764 * 359.95659 * 9 7 2 11 11 C 1.53498 * 87.98706 * 207.15118 * 10 9 7 12 12 C 1.47072 * 136.06075 * 179.97438 * 9 7 2 13 13 H 1.09004 * 113.46591 * 267.68834 * 12 9 7 14 14 C 1.52997 * 113.46646 * 38.06551 * 12 9 7 15 15 N 1.46505 * 109.47212 * 285.49578 * 14 12 9 16 16 C 1.34771 * 119.99622 * 179.97438 * 15 14 12 17 17 O 1.21280 * 120.00597 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.99622 * 179.97438 * 16 15 14 19 19 C 1.53000 * 112.85010 * 48.80763 * 18 16 15 20 20 F 1.39898 * 109.46967 * 309.66829 * 19 18 16 21 21 C 1.53781 * 113.61808 * 277.49842 * 18 16 15 22 22 C 1.53769 * 87.08577 * 220.01994 * 21 18 16 23 23 C 1.53781 * 113.61596 * 180.02562 * 18 16 15 24 24 H 0.97005 * 119.99903 * 359.97438 * 1 2 3 25 25 H 1.09008 * 113.46562 * 321.93166 * 10 9 7 26 26 H 1.09004 * 113.47333 * 92.30963 * 10 9 7 27 27 H 1.09002 * 114.20552 * 220.34357 * 11 10 9 28 28 H 1.08995 * 114.20904 * 87.51493 * 11 10 9 29 29 H 1.09002 * 109.47153 * 165.49570 * 14 12 9 30 30 H 1.09001 * 109.46832 * 45.49761 * 14 12 9 31 31 H 0.96996 * 119.99606 * 0.02562 * 15 14 12 32 32 H 1.08999 * 109.47127 * 69.66406 * 19 18 16 33 33 H 1.09003 * 109.47202 * 189.66532 * 19 18 16 34 34 H 1.09001 * 113.61416 * 334.57244 * 21 18 16 35 35 H 1.09008 * 113.61303 * 105.47080 * 21 18 16 36 36 H 1.09011 * 113.61791 * 270.88574 * 22 21 18 37 37 H 1.08993 * 113.69601 * 139.98918 * 22 21 18 38 38 H 1.09005 * 113.61710 * 254.53365 * 23 18 16 39 39 H 1.09006 * 113.61437 * 25.34808 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0016 10 6 -0.0876 -2.7948 0.0032 11 6 0.3425 -4.0914 0.7032 12 6 1.6800 -3.8154 0.0020 13 1 1.7446 -4.2468 -0.9970 14 6 2.8998 -4.1401 0.8665 15 7 4.1157 -3.6900 0.1842 16 6 5.3194 -3.8721 0.7624 17 8 5.3962 -4.4089 1.8472 18 6 6.5701 -3.4096 0.0603 19 6 6.4663 -1.9721 -0.4531 20 9 5.2835 -1.8226 -1.1850 21 6 7.0907 -4.4048 -0.9902 22 6 8.5063 -4.0686 -0.4926 23 6 7.8595 -3.6905 0.8499 24 1 -0.4850 0.8401 0.0004 25 1 -0.7219 -2.1582 0.6202 26 1 -0.4948 -2.9539 -0.9954 27 1 -0.1727 -4.9836 0.3472 28 1 0.3843 -4.0200 1.7900 29 1 2.9526 -5.2163 1.0308 30 1 2.8114 -3.6300 1.8257 31 1 4.0542 -3.2604 -0.6832 32 1 6.4599 -1.2840 0.3922 33 1 7.3204 -1.7525 -1.0938 34 1 6.7943 -5.4362 -0.7992 35 1 6.9035 -4.0928 -2.0177 36 1 8.9625 -3.2249 -1.0108 37 1 9.1660 -4.9341 -0.4308 38 1 8.2931 -2.8018 1.3085 39 1 7.7727 -4.5258 1.5449 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323307563.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:24 Heat of formation + Delta-G solvation = -11.716061 kcal Electronic energy + Delta-G solvation = -21902.926328 eV Core-core repulsion = 18569.516907 eV Total energy + Delta-G solvation = -3333.409421 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.148 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.64768 -40.24003 -38.41573 -37.32802 -33.93631 -32.14867 -29.32769 -27.96685 -27.38201 -25.80130 -24.53788 -23.41581 -22.00946 -20.61254 -19.36719 -18.79622 -17.38289 -16.52557 -16.07442 -15.93376 -15.48257 -15.18420 -15.00243 -14.39213 -14.33710 -14.04092 -13.73525 -13.27542 -12.97587 -12.57936 -12.17870 -11.87735 -11.78732 -11.47455 -11.37959 -11.06024 -10.99995 -10.93497 -10.72647 -10.56278 -10.48605 -10.46556 -9.93487 -9.76739 -9.47773 -9.08728 -8.75687 -8.46794 -6.84631 -5.71086 -3.02987 2.89478 3.41189 3.45525 3.47781 3.59545 4.21955 4.29474 4.41585 4.48409 4.58308 4.83680 5.01085 5.10017 5.22604 5.34595 5.45951 5.52764 5.58121 5.60961 5.68090 5.72524 5.81056 5.88101 5.94784 5.96909 6.14469 6.20096 6.36149 6.44249 6.63838 6.77175 6.98622 7.28579 7.43580 7.63999 8.02645 8.04147 8.63617 9.10344 9.76482 10.68402 11.46484 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.018678 B = 0.006972 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.705196 B = 4014.961262 C = 5088.484485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.208 4.208 8 H 0.085 0.915 9 N -0.600 5.600 10 C 0.151 3.849 11 C -0.161 4.161 12 C 0.127 3.873 13 H 0.047 0.953 14 C 0.119 3.881 15 N -0.706 5.706 16 C 0.523 3.477 17 O -0.553 6.553 18 C -0.147 4.147 19 C 0.086 3.914 20 F -0.197 7.197 21 C -0.117 4.117 22 C -0.142 4.142 23 C -0.106 4.106 24 H 0.252 0.748 25 H 0.072 0.928 26 H 0.024 0.976 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.409 0.591 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.306 -8.244 -2.361 15.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.335 4.335 8 H 0.103 0.897 9 N -0.325 5.325 10 C 0.025 3.975 11 C -0.200 4.200 12 C 0.019 3.981 13 H 0.064 0.936 14 C -0.005 4.005 15 N -0.360 5.360 16 C 0.308 3.692 17 O -0.432 6.432 18 C -0.151 4.151 19 C 0.031 3.969 20 F -0.178 7.178 21 C -0.155 4.155 22 C -0.180 4.180 23 C -0.144 4.144 24 H 0.062 0.938 25 H 0.090 0.910 26 H 0.042 0.958 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.249 0.751 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 13.332 -8.221 -1.621 15.746 hybrid contribution 0.245 1.235 -0.603 1.396 sum 13.576 -6.986 -2.224 15.430 Atomic orbital electron populations 1.69834 1.04938 1.25102 1.57025 1.24757 0.95611 0.97351 1.02879 0.86178 0.78646 0.83822 0.77524 1.21660 1.21775 1.20751 1.18982 0.90314 0.81225 1.42990 0.89714 1.45704 1.02532 0.98599 1.85714 1.22032 0.88784 0.90191 0.96463 1.23662 0.96959 0.99035 1.00340 1.22406 0.91989 0.87885 0.95775 0.93594 1.21803 0.83514 0.98018 0.97211 1.46326 1.05575 1.59954 1.24101 1.20018 0.84436 0.79226 0.85506 1.90639 1.87000 1.44557 1.21015 1.22852 0.95399 0.96924 0.99898 1.21743 0.84718 0.94490 0.95943 1.92729 1.49548 1.96235 1.79320 1.22877 0.95815 0.98907 0.97892 1.22881 0.96206 1.01888 0.96996 1.22773 0.92030 1.02995 0.96576 0.93825 0.90979 0.95791 0.92392 0.90232 0.92479 0.91218 0.75090 0.89895 0.89680 0.89286 0.90359 0.89836 0.90764 0.90772 0.88123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.58 11.51 55.49 0.64 -26.94 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.21 -5.74 10.55 -15.06 -0.16 -5.89 16 8 H 0.09 2.28 7.08 -52.49 -0.37 1.90 16 9 N -0.60 -15.09 3.65 -176.98 -0.65 -15.73 16 10 C 0.15 3.55 7.39 -8.51 -0.06 3.48 16 11 C -0.16 -3.03 8.03 -26.21 -0.21 -3.24 16 12 C 0.13 2.57 4.10 -72.39 -0.30 2.27 16 13 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 14 C 0.12 2.29 5.52 -4.04 -0.02 2.27 16 15 N -0.71 -12.99 5.06 -60.29 -0.30 -13.30 16 16 C 0.52 9.17 6.93 -10.99 -0.08 9.09 16 17 O -0.55 -11.24 15.90 5.56 0.09 -11.15 16 18 C -0.15 -1.92 1.15 -154.85 -0.18 -2.10 16 19 C 0.09 1.10 6.85 37.16 0.25 1.35 16 20 F -0.20 -3.27 14.10 2.25 0.03 -3.24 16 21 C -0.12 -1.23 7.20 -25.93 -0.19 -1.42 16 22 C -0.14 -1.21 7.73 -25.94 -0.20 -1.41 16 23 C -0.11 -1.16 6.99 -25.94 -0.18 -1.35 16 24 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.07 1.88 7.13 -51.92 -0.37 1.51 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.08 1.49 8.12 -51.93 -0.42 1.07 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.41 7.59 5.85 -40.82 -0.24 7.36 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.09 0.79 7.34 -51.93 -0.38 0.41 16 34 H 0.09 0.97 8.09 -51.93 -0.42 0.55 16 35 H 0.08 0.76 8.10 -51.92 -0.42 0.34 16 36 H 0.08 0.59 7.64 -51.92 -0.40 0.20 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.73 8.10 -51.93 -0.42 0.30 16 39 H 0.10 1.25 7.43 -51.93 -0.39 0.86 16 LS Contribution 319.23 15.07 4.81 4.81 Total: -1.00 -32.61 319.23 -7.74 -40.35 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -5.92 Total: 5.01 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -1.42 Total: 2.67 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -0.31 Total: -55.97 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.03 Total: -3.24 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.61 -7.74 -40.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323307563.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.638 kcal (2) G-P(sol) polarization free energy of solvation -32.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds