Wall clock time and date at job start Mon Mar 30 2020 01:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21281 * 120.00430 * 2 1 4 4 N 1.34776 * 119.99854 * 179.97438 * 2 1 3 5 5 C 1.46498 * 120.00307 * 179.97438 * 4 2 1 6 6 C 1.50696 * 109.47493 * 180.02562 * 5 4 2 7 7 O 1.20828 * 119.99828 * 0.02562 * 6 5 4 8 8 O 1.34228 * 119.99951 * 179.97438 * 6 5 4 9 9 C 1.45208 * 116.99562 * 180.02562 * 8 6 5 10 10 C 1.53065 * 109.44258 * 89.80295 * 9 8 6 11 11 C 1.53192 * 109.29648 * 181.23391 * 10 9 8 12 12 N 1.46922 * 108.89269 * 305.57538 * 11 10 9 13 13 C 1.36942 * 120.62796 * 233.51528 * 12 11 10 14 14 H 1.08007 * 119.99636 * 151.83092 * 13 12 11 15 15 C 1.38806 * 120.00203 * 331.83144 * 13 12 11 16 16 N 1.31624 * 120.00191 * 343.08250 * 15 13 12 17 17 Si 1.86800 * 120.00146 * 163.07925 * 15 13 12 18 18 H 1.48503 * 109.47195 * 89.99708 * 17 15 13 19 19 H 1.48498 * 109.47355 * 210.00264 * 17 15 13 20 20 H 1.48504 * 109.46850 * 330.00278 * 17 15 13 21 21 C 1.46924 * 118.73925 * 53.53382 * 12 11 10 22 22 C 1.53049 * 109.45518 * 210.00230 * 9 8 6 23 23 H 1.09003 * 109.46936 * 270.00608 * 1 2 3 24 24 H 1.08998 * 109.46714 * 30.00115 * 1 2 3 25 25 H 1.08996 * 109.47251 * 150.00376 * 1 2 3 26 26 H 0.97006 * 120.00084 * 0.02562 * 4 2 1 27 27 H 1.09004 * 109.46798 * 59.99936 * 5 4 2 28 28 H 1.09000 * 109.47133 * 300.00422 * 5 4 2 29 29 H 1.08996 * 109.45901 * 329.97140 * 9 8 6 30 30 H 1.09005 * 109.39523 * 61.35455 * 10 9 8 31 31 H 1.09004 * 109.62174 * 301.25143 * 10 9 8 32 32 H 1.09003 * 109.58615 * 185.71531 * 11 10 9 33 33 H 1.08998 * 109.58372 * 65.43477 * 11 10 9 34 34 H 0.96995 * 120.00379 * 180.02562 * 16 15 13 35 35 H 1.09007 * 109.58325 * 66.18371 * 21 12 11 36 36 H 1.08996 * 109.58499 * 186.46256 * 21 12 11 37 37 H 1.09002 * 109.49883 * 58.68152 * 22 9 8 38 38 H 1.08997 * 109.52642 * 298.59460 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0000 6 6 4.1481 -2.5881 0.0001 7 8 3.3629 -3.5065 0.0001 8 8 5.4678 -2.8334 -0.0009 9 6 5.8794 -4.2259 -0.0013 10 6 6.0180 -4.7158 -1.4448 11 6 6.4223 -6.1934 -1.4413 12 7 7.6355 -6.3528 -0.6280 13 6 8.7434 -6.9723 -1.1418 14 1 9.7260 -6.7109 -0.7775 15 6 8.6037 -7.9363 -2.1307 16 7 7.4315 -8.4961 -2.3432 17 14 10.0791 -8.4390 -3.1603 18 1 10.7789 -9.5716 -2.5025 19 1 9.6218 -8.8563 -4.5100 20 1 11.0096 -7.2885 -3.2866 21 6 7.6373 -5.8351 0.7470 22 6 7.2229 -4.3606 0.7193 23 1 -0.3633 0.0001 1.0277 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6958 -2.0073 0.0005 27 1 4.0095 -0.6529 0.8895 28 1 4.0089 -0.6541 -0.8905 29 1 5.1294 -4.8264 0.5135 30 1 6.7837 -4.1303 -1.9538 31 1 5.0663 -4.6002 -1.9635 32 1 6.6210 -6.5203 -2.4620 33 1 5.6164 -6.7917 -1.0164 34 1 7.3339 -9.1700 -3.0340 35 1 6.9298 -6.4023 1.3519 36 1 8.6371 -5.9279 1.1710 37 1 7.1270 -3.9904 1.7401 38 1 7.9793 -3.7799 0.1913 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344616877.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:42 Heat of formation + Delta-G solvation = -107.699061 kcal Electronic energy + Delta-G solvation = -20733.690340 eV Core-core repulsion = 17383.745995 eV Total energy + Delta-G solvation = -3349.944345 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.73888 -39.64081 -37.64394 -36.04243 -34.74318 -32.78905 -30.93472 -30.33203 -29.78058 -27.70888 -25.13674 -22.55016 -22.28720 -20.97825 -20.77951 -19.41285 -17.97127 -17.32070 -16.86709 -16.43872 -16.42209 -15.47785 -15.35684 -14.81798 -14.06971 -13.86084 -13.62019 -13.58225 -13.25540 -12.93938 -12.84142 -12.72542 -12.56959 -12.31453 -11.60602 -11.38302 -11.22229 -10.82570 -10.75424 -10.52223 -10.40160 -10.32154 -10.26828 -9.96152 -9.74612 -9.55110 -9.48404 -8.53336 -6.77976 -5.85945 -3.29248 2.10274 2.31050 2.33746 3.15781 3.34425 3.41620 3.44045 4.43785 4.44781 4.62659 4.90165 4.97065 5.08160 5.11098 5.15896 5.32323 5.34568 5.45768 5.49092 5.62900 5.88708 5.95465 6.13332 6.17450 6.37050 6.43345 6.51888 6.62785 6.74281 6.85826 7.13166 7.24308 7.54823 7.70055 7.73634 7.86537 8.37241 9.12960 9.75793 10.31853 11.23128 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.043979 B = 0.003364 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.516630 B = 8322.354113 C = 8523.813959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.515 3.485 3 O -0.547 6.547 4 N -0.723 5.723 5 C 0.124 3.876 6 C 0.456 3.544 7 O -0.508 6.508 8 O -0.352 6.352 9 C 0.098 3.902 10 C -0.154 4.154 11 C 0.175 3.825 12 N -0.592 5.592 13 C -0.257 4.257 14 H 0.068 0.932 15 C 0.003 3.997 16 N -0.902 5.902 17 Si 0.904 3.096 18 H -0.286 1.286 19 H -0.289 1.289 20 H -0.279 1.279 21 C 0.148 3.852 22 C -0.128 4.128 23 H 0.096 0.904 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.414 0.586 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.022 0.978 34 H 0.255 0.745 35 H 0.021 0.979 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.815 13.279 5.006 17.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.302 3.698 3 O -0.425 6.425 4 N -0.381 5.381 5 C -0.001 4.001 6 C 0.298 3.702 7 O -0.396 6.396 8 O -0.267 6.267 9 C 0.045 3.955 10 C -0.194 4.194 11 C 0.049 3.951 12 N -0.315 5.315 13 C -0.386 4.386 14 H 0.085 0.915 15 C -0.195 4.195 16 N -0.546 5.546 17 Si 0.733 3.267 18 H -0.213 1.213 19 H -0.215 1.215 20 H -0.204 1.204 21 C 0.021 3.979 22 C -0.168 4.168 23 H 0.114 0.886 24 H 0.114 0.886 25 H 0.101 0.899 26 H 0.252 0.748 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.041 0.959 34 H 0.065 0.935 35 H 0.039 0.961 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.590 13.559 4.877 17.883 hybrid contribution 0.401 -0.890 -0.586 1.138 sum -10.189 12.669 4.292 16.815 Atomic orbital electron populations 1.21864 0.90889 1.05190 1.05053 1.20842 0.90810 0.82825 0.75279 1.90746 1.70790 1.31344 1.49593 1.45919 1.05839 1.10297 1.75996 1.20645 0.81810 0.91421 1.06256 1.23312 0.82277 0.91821 0.72779 1.90658 1.56720 1.46488 1.45759 1.86521 1.23646 1.34000 1.82581 1.23038 0.97035 0.76363 0.99064 1.22689 1.00836 1.02034 0.93795 1.20760 0.87732 0.87842 0.98798 1.44125 1.13063 1.66617 1.07691 1.19178 0.85962 1.14794 1.18678 0.91468 1.25080 0.96831 0.96117 1.01518 1.70021 1.23000 1.27644 1.33955 0.86277 0.82155 0.78419 0.79799 1.21304 1.21508 1.20394 1.20892 0.99265 0.89556 0.88180 1.22247 0.94660 1.00917 0.98930 0.88590 0.88605 0.89855 0.74848 0.87179 0.87103 0.90169 0.91578 0.92732 0.88791 0.95943 0.93485 0.96087 0.91684 0.92162 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 10.30 36.01 0.37 -0.60 16 2 C 0.51 5.12 7.94 -10.99 -0.09 5.04 16 3 O -0.55 -7.64 17.10 5.56 0.10 -7.54 16 4 N -0.72 -7.02 5.53 -61.47 -0.34 -7.36 16 5 C 0.12 1.31 6.27 -5.20 -0.03 1.28 16 6 C 0.46 6.29 8.00 36.00 0.29 6.57 16 7 O -0.51 -8.10 14.89 -18.75 -0.28 -8.38 16 8 O -0.35 -5.45 9.88 -39.25 -0.39 -5.83 16 9 C 0.10 1.74 2.41 -26.67 -0.06 1.68 16 10 C -0.15 -3.02 5.72 -26.60 -0.15 -3.18 16 11 C 0.17 4.15 5.30 -3.71 -0.02 4.13 16 12 N -0.59 -14.61 3.00 -172.32 -0.52 -15.13 16 13 C -0.26 -6.92 9.58 -15.06 -0.14 -7.06 16 14 H 0.07 1.76 7.89 -52.48 -0.41 1.35 16 15 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 16 N -0.90 -25.87 11.20 55.49 0.62 -25.25 16 17 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 C 0.15 3.00 6.52 -3.71 -0.02 2.98 16 22 C -0.13 -2.20 5.75 -26.61 -0.15 -2.36 16 23 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.41 3.67 7.44 -40.82 -0.30 3.37 16 27 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.08 1.49 7.16 -51.93 -0.37 1.12 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.09 2.49 6.06 -51.93 -0.31 2.17 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 1.27 7.93 -51.93 -0.41 0.85 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 319.54 15.07 4.82 4.82 Total: -1.00 -32.14 319.54 -6.73 -38.87 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -5.60 Total: 0.99 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -0.10 Total: 8.49 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.23 Total: -47.73 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.57 Total: -21.76 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.14 -6.73 -38.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344616877.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.829 kcal (2) G-P(sol) polarization free energy of solvation -32.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds