Wall clock time and date at job start Mon Mar 30 2020 00:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.34779 * 119.99872 * 180.02562 * 3 2 1 5 5 O 1.21278 * 120.00071 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99944 * 180.02562 * 4 3 2 7 7 C 1.50701 * 109.47064 * 180.02562 * 6 4 3 8 8 O 1.21280 * 119.99781 * 359.97438 * 7 6 4 9 9 N 1.34777 * 120.00115 * 179.97438 * 7 6 4 10 10 C 1.47429 * 125.64358 * 0.02562 * 9 7 6 11 11 C 1.54913 * 104.82859 * 204.08763 * 10 9 7 12 12 C 1.55151 * 101.58551 * 322.99639 * 11 10 9 13 13 O 1.42900 * 110.71712 * 276.95858 * 12 11 10 14 14 C 1.50693 * 110.72456 * 153.86130 * 12 11 10 15 15 H 1.08003 * 120.00299 * 241.45220 * 14 12 11 16 16 C 1.37880 * 119.99856 * 61.44839 * 14 12 11 17 17 N 1.31516 * 119.99823 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00256 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46784 * 90.00284 * 18 16 14 20 20 H 1.48503 * 109.47569 * 210.00311 * 18 16 14 21 21 H 1.48498 * 109.47130 * 330.00750 * 18 16 14 22 22 C 1.47015 * 125.65123 * 179.71230 * 9 7 6 23 23 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 28 28 H 0.97000 * 120.00420 * 0.02562 * 3 2 1 29 29 H 1.09002 * 109.47152 * 300.00160 * 6 4 3 30 30 H 1.09001 * 109.46980 * 60.00059 * 6 4 3 31 31 H 1.08994 * 110.36704 * 322.93136 * 10 9 7 32 32 H 1.09007 * 110.36518 * 85.25494 * 10 9 7 33 33 H 1.09005 * 110.99807 * 81.06644 * 11 10 9 34 34 H 1.08994 * 111.00549 * 204.87762 * 11 10 9 35 35 H 0.96698 * 114.00092 * 298.54495 * 13 12 11 36 36 H 0.97001 * 119.99717 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.88315 * 298.39770 * 22 9 7 38 38 H 1.09000 * 109.87934 * 59.55943 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1315 0.7058 -0.0005 6 6 3.8456 3.0484 0.0001 7 6 5.3527 3.0484 -0.0013 8 8 5.9591 1.9981 -0.0022 9 7 6.0265 4.2156 -0.0016 10 6 5.4185 5.5587 -0.0001 11 6 6.4997 6.4840 -0.6123 12 6 7.8004 5.8718 -0.0289 13 8 8.0437 6.3646 1.2902 14 6 8.9750 6.1589 -0.9283 15 1 9.5208 5.3440 -1.3804 16 6 9.3528 7.4620 -1.1739 17 7 8.6884 8.4543 -0.6230 18 14 10.8092 7.8180 -2.2882 19 1 10.3385 7.9520 -3.6902 20 1 11.4613 9.0823 -1.8620 21 1 11.7854 6.7027 -2.1983 22 6 7.4895 4.3604 0.0031 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.3879 2.1185 0.0004 29 1 3.4818 3.5628 -0.8894 30 1 3.4827 3.5617 0.8906 31 1 4.5185 5.5684 -0.6149 32 1 5.1864 5.8689 1.0188 33 1 6.4939 6.4247 -1.7007 34 1 6.3676 7.5132 -0.2785 35 1 8.1693 7.3223 1.3354 36 1 8.9539 9.3710 -0.7961 37 1 7.9034 3.9138 0.9072 38 1 7.9125 3.8782 -0.8782 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346083235.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:58 Heat of formation + Delta-G solvation = -121.197122 kcal Electronic energy + Delta-G solvation = -20975.683608 eV Core-core repulsion = 17625.153943 eV Total energy + Delta-G solvation = -3350.529665 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.09604 -38.83936 -37.07853 -35.23916 -34.25397 -32.21928 -31.66556 -30.10917 -29.11376 -28.08474 -25.08470 -23.28026 -22.29817 -20.88229 -19.71197 -18.69050 -17.38756 -17.03825 -16.37336 -16.03680 -15.66681 -15.24311 -14.94826 -14.70561 -14.16862 -14.14316 -13.43647 -13.32931 -12.96987 -12.69076 -12.38786 -12.09350 -12.05785 -11.86354 -11.62905 -11.42207 -11.38312 -11.34126 -10.89030 -10.63574 -10.48701 -10.11527 -9.88206 -9.38733 -9.13783 -9.03957 -8.67519 -8.22629 -7.94755 -6.29296 -4.36306 2.71570 2.92993 3.15694 3.20053 3.27590 3.32793 3.70433 4.27206 4.59317 4.74316 4.81987 4.95093 5.00933 5.06946 5.24101 5.28946 5.53704 5.55774 5.65577 5.74150 5.78011 5.90782 6.00043 6.22587 6.34794 6.47807 6.73070 6.91181 6.98873 7.29194 7.34690 7.41449 7.72946 8.02858 8.14550 8.28974 8.66111 8.74998 9.30052 9.39089 10.78247 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.045005 B = 0.003650 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.999108 B = 7669.097912 C = 7825.243424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.741 5.741 4 C 0.511 3.489 5 O -0.491 6.491 6 C -0.160 4.160 7 C 0.521 3.479 8 O -0.511 6.511 9 N -0.612 5.612 10 C 0.094 3.906 11 C -0.134 4.134 12 C 0.246 3.754 13 O -0.585 6.585 14 C -0.533 4.533 15 H 0.064 0.936 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.903 3.097 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.272 1.272 22 C 0.125 3.875 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.398 0.602 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.382 0.618 36 H 0.268 0.732 37 H 0.060 0.940 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.854 -5.513 0.572 17.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.396 5.396 4 C 0.295 3.705 5 O -0.362 6.362 6 C -0.203 4.203 7 C 0.306 3.694 8 O -0.386 6.386 9 N -0.347 5.347 10 C -0.029 4.029 11 C -0.173 4.173 12 C 0.206 3.794 13 O -0.394 6.394 14 C -0.572 4.572 15 H 0.082 0.918 16 C -0.130 4.130 17 N -0.536 5.536 18 Si 0.730 3.270 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.197 1.197 22 C 0.003 3.997 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.232 0.768 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.232 0.768 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.011 -7.322 0.735 17.621 hybrid contribution 0.306 1.483 -0.781 1.704 sum -15.705 -5.839 -0.045 16.756 Atomic orbital electron populations 1.21998 0.94576 1.03108 1.02445 1.21243 0.93953 0.83239 1.02407 1.46062 1.07010 1.08694 1.77877 1.20137 0.82109 0.91084 0.77127 1.90861 1.54374 1.45530 1.45437 1.21562 0.96096 0.96355 1.06257 1.19453 0.88379 0.83061 0.78475 1.90819 1.69324 1.29958 1.48498 1.48640 1.08540 1.05316 1.72245 1.22516 0.97195 0.82891 1.00313 1.23292 0.94993 0.98842 1.00193 1.19474 0.91805 0.86666 0.81428 1.86141 1.94510 1.28626 1.30131 1.21526 1.14368 0.92705 1.28569 0.91761 1.24983 0.96659 0.95959 0.95440 1.69694 1.40244 0.99454 1.44235 0.86411 0.82263 0.77868 0.80422 1.20505 1.21029 1.19673 1.22036 0.78063 0.98335 1.01226 0.92010 0.92000 0.90918 0.91638 0.91633 0.76844 0.86434 0.86452 0.92273 0.91980 0.91456 0.89377 0.76828 0.92255 0.92162 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 10.03 37.16 0.37 -0.52 16 2 C 0.12 1.04 6.39 -4.04 -0.03 1.01 16 3 N -0.74 -7.21 5.56 -60.29 -0.33 -7.55 16 4 C 0.51 7.39 7.82 -10.98 -0.09 7.31 16 5 O -0.49 -9.87 14.18 -18.96 -0.27 -10.14 16 6 C -0.16 -2.07 5.19 -29.03 -0.15 -2.22 16 7 C 0.52 10.02 7.84 -10.98 -0.09 9.93 16 8 O -0.51 -12.22 14.51 -18.96 -0.28 -12.50 16 9 N -0.61 -12.05 3.33 -170.51 -0.57 -12.62 16 10 C 0.09 1.60 6.68 -2.52 -0.02 1.58 16 11 C -0.13 -2.81 5.47 -24.58 -0.13 -2.94 16 12 C 0.25 5.90 0.85 -89.94 -0.08 5.82 16 13 O -0.59 -14.54 13.07 -35.23 -0.46 -15.00 16 14 C -0.53 -13.94 8.22 -34.44 -0.28 -14.22 16 15 H 0.06 1.70 7.58 -52.48 -0.40 1.30 16 16 C 0.07 1.84 5.28 -17.82 -0.09 1.74 16 17 N -0.90 -22.69 10.67 55.43 0.59 -22.10 16 18 Si 0.90 20.23 29.54 -169.99 -5.02 15.20 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 C 0.13 2.87 6.23 -3.06 -0.02 2.85 16 23 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.40 2.47 8.47 -40.82 -0.35 2.12 16 29 H 0.12 1.16 7.85 -51.93 -0.41 0.76 16 30 H 0.12 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.06 0.79 7.48 -51.93 -0.39 0.41 16 32 H 0.06 1.02 8.14 -51.92 -0.42 0.59 16 33 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 34 H 0.09 1.90 7.54 -51.93 -0.39 1.51 16 35 H 0.38 9.42 7.46 45.56 0.34 9.76 16 36 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 37 H 0.06 1.45 8.07 -51.93 -0.42 1.03 16 38 H 0.07 1.68 7.66 -51.93 -0.40 1.29 16 LS Contribution 317.61 15.07 4.79 4.79 Total: -1.00 -33.15 317.61 -7.07 -40.22 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -4.92 Total: 9.36 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -0.60 Total: 10.34 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: -0.31 Total: -42.26 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -1.00 Total: -37.64 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.15 -7.07 -40.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346083235.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.982 kcal (2) G-P(sol) polarization free energy of solvation -33.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds