Wall clock time and date at job start Mon Mar 30 2020 01:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00348 * 2 1 4 4 H 1.48497 * 109.47470 * 95.01059 * 3 2 1 5 5 H 1.48508 * 109.46833 * 215.00974 * 3 2 1 6 6 H 1.48496 * 109.47215 * 335.00403 * 3 2 1 7 7 C 1.38817 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99702 * 174.81512 * 7 2 1 9 9 N 1.36936 * 119.99836 * 354.81840 * 7 2 1 10 10 C 1.46503 * 119.99572 * 185.60601 * 9 7 2 11 11 C 1.53000 * 115.54911 * 64.51820 * 10 9 7 12 12 N 1.46495 * 109.46952 * 83.35394 * 11 10 9 13 13 C 1.34785 * 119.99724 * 184.65883 * 12 11 10 14 14 O 1.21271 * 120.00043 * 5.33321 * 13 12 11 15 15 C 1.50703 * 119.99899 * 185.33157 * 13 12 11 16 16 C 1.53001 * 115.54949 * 302.27864 * 15 13 12 17 17 C 1.53003 * 109.46936 * 295.93109 * 16 15 13 18 18 F 1.39898 * 109.47048 * 180.28285 * 17 16 15 19 19 C 1.52994 * 117.49846 * 156.60809 * 15 13 12 20 20 C 1.52995 * 117.49906 * 87.94800 * 15 13 12 21 21 C 1.53001 * 117.49959 * 278.84282 * 10 9 7 22 22 C 1.53006 * 117.49450 * 210.18518 * 10 9 7 23 23 H 0.97006 * 119.99676 * 359.97438 * 1 2 3 24 24 H 0.96997 * 120.00499 * 5.61051 * 9 7 2 25 25 H 1.09004 * 109.46483 * 203.34992 * 11 10 9 26 26 H 1.08994 * 109.47242 * 323.34901 * 11 10 9 27 27 H 0.96998 * 120.00781 * 4.66141 * 12 11 10 28 28 H 1.09003 * 109.47495 * 55.92845 * 16 15 13 29 29 H 1.08996 * 109.47321 * 175.93244 * 16 15 13 30 30 H 1.08998 * 109.47046 * 300.28023 * 17 16 15 31 31 H 1.09000 * 109.47281 * 60.28618 * 17 16 15 32 32 H 1.09003 * 117.49590 * 359.97438 * 19 15 13 33 33 H 1.08999 * 117.50181 * 145.01648 * 19 15 13 34 34 H 1.08998 * 117.49777 * 214.98210 * 20 15 13 35 35 H 1.09001 * 117.49919 * 359.97209 * 20 15 13 36 36 H 1.09000 * 117.49685 * 0.02562 * 21 10 9 37 37 H 1.08996 * 117.49678 * 145.02381 * 21 10 9 38 38 H 1.09006 * 117.49522 * 214.98026 * 22 10 9 39 39 H 1.08996 * 117.49925 * 359.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6037 1.9853 1.3947 5 1 3.4909 1.4728 -0.8033 6 1 1.3989 2.6809 -0.5916 7 6 2.0102 -1.2022 0.0005 8 1 3.0869 -1.2042 -0.0840 9 7 1.3296 -2.3856 0.1082 10 6 2.0666 -3.6457 0.2324 11 6 2.9035 -3.7979 1.5041 12 7 2.0491 -4.2669 2.5978 13 6 2.5518 -4.3840 3.8429 14 8 3.6812 -4.0104 4.0785 15 6 1.7102 -4.9791 4.9423 16 6 0.3804 -4.2720 5.2117 17 6 0.6503 -2.8505 5.7091 18 9 -0.5655 -2.2061 5.9615 19 6 2.4412 -5.5892 6.1399 20 6 1.7512 -6.4982 5.1198 21 6 2.6111 -4.2752 -1.0514 22 6 1.4125 -4.9058 -0.3380 23 1 -0.4850 0.8401 0.0004 24 1 0.3597 -2.3896 0.1021 25 1 3.7006 -4.5209 1.3300 26 1 3.3385 -2.8346 1.7703 27 1 1.1217 -4.4933 2.4260 28 1 -0.2020 -4.2304 4.2912 29 1 -0.1768 -4.8225 5.9697 30 1 1.2369 -2.8919 6.6268 31 1 1.2031 -2.2984 4.9490 32 1 3.5308 -5.5605 6.1324 33 1 1.9746 -5.4871 7.1197 34 1 0.8309 -6.9938 5.4288 35 1 2.3865 -7.0672 4.4410 36 1 2.4213 -3.7516 -1.9883 37 1 3.5654 -4.7982 -0.9899 38 1 1.5788 -5.8433 0.1926 39 1 0.4337 -4.7973 -0.8053 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499299799.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:19 Heat of formation + Delta-G solvation = -34.990566 kcal Electronic energy + Delta-G solvation = -21148.285119 eV Core-core repulsion = 17813.866440 eV Total energy + Delta-G solvation = -3334.418679 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.47929 -40.07024 -37.84827 -36.64050 -33.79999 -33.01951 -31.25818 -29.72340 -27.06946 -24.10060 -23.85866 -22.81927 -22.37316 -21.76098 -19.58297 -18.78341 -17.20244 -17.01683 -16.16158 -15.86233 -15.71475 -15.28478 -15.04643 -14.64763 -14.32146 -14.04526 -13.88177 -13.40361 -13.08987 -12.81108 -12.37556 -12.15905 -11.92444 -11.71850 -11.55994 -11.03801 -11.00693 -10.87904 -10.80455 -10.60100 -10.29190 -10.25940 -10.12559 -9.78215 -9.66080 -9.34682 -8.87570 -8.64014 -7.08443 -5.85179 -3.15144 2.72366 3.29478 3.41852 3.47942 3.48072 3.57126 4.27723 4.38223 4.56171 4.57867 4.65591 4.82928 4.93068 5.06418 5.18320 5.23053 5.28419 5.32969 5.41896 5.42624 5.59785 5.68298 5.73917 5.77520 5.80139 5.96489 6.01181 6.04430 6.21519 6.38640 6.52713 6.65124 6.72981 6.81286 7.68740 7.82460 8.33206 8.47833 9.44659 9.97766 10.33033 11.36665 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.014988 B = 0.006140 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.699248 B = 4559.174238 C = 5578.799852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.007 4.007 3 Si 0.906 3.094 4 H -0.288 1.288 5 H -0.281 1.281 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.688 5.688 10 C 0.130 3.870 11 C 0.145 3.855 12 N -0.705 5.705 13 C 0.543 3.457 14 O -0.544 6.544 15 C -0.159 4.159 16 C -0.108 4.108 17 C 0.062 3.938 18 F -0.217 7.217 19 C -0.145 4.145 20 C -0.151 4.151 21 C -0.188 4.188 22 C -0.187 4.187 23 H 0.257 0.743 24 H 0.388 0.612 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.400 0.600 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.038 -13.985 9.142 16.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.204 4.204 3 Si 0.736 3.264 4 H -0.215 1.215 5 H -0.207 1.207 6 H -0.217 1.217 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.328 5.328 10 C 0.035 3.965 11 C 0.020 3.980 12 N -0.354 5.354 13 C 0.328 3.672 14 O -0.421 6.421 15 C -0.163 4.163 16 C -0.146 4.146 17 C 0.007 3.993 18 F -0.198 7.198 19 C -0.183 4.183 20 C -0.189 4.189 21 C -0.229 4.229 22 C -0.225 4.225 23 H 0.067 0.933 24 H 0.223 0.777 25 H 0.074 0.926 26 H 0.100 0.900 27 H 0.235 0.765 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.921 -13.505 9.274 16.495 hybrid contribution -0.411 0.930 -0.218 1.040 sum 1.510 -12.575 9.057 15.570 Atomic orbital electron populations 1.69660 1.05150 1.25966 1.56816 1.24765 0.95499 0.97743 1.02344 0.86231 0.78743 0.83613 0.77770 1.21503 1.20661 1.21736 1.19140 0.91570 0.83596 1.42910 0.90963 1.41781 1.05138 0.99274 1.86561 1.20150 0.97951 0.86964 0.91395 1.21302 0.91701 0.99847 0.85137 1.45866 1.15244 1.66414 1.07880 1.19376 0.86636 0.78459 0.82693 1.90685 1.19764 1.49289 1.82382 1.21364 0.98271 0.97082 0.99566 1.21640 0.94431 0.95221 1.03277 1.21939 0.82611 0.92357 1.02415 1.92767 1.47824 1.83358 1.95885 1.23029 1.00753 1.01229 0.93241 1.23058 1.03250 0.89971 1.02588 1.23388 0.96385 1.04276 0.98876 1.23079 0.98096 0.96198 1.05115 0.93339 0.77739 0.92574 0.90010 0.76545 0.89674 0.89873 0.90690 0.90301 0.87526 0.87952 0.87770 0.88222 0.88617 0.89934 0.89471 0.88957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.42 13.07 55.49 0.73 -26.69 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 22.40 29.56 -169.99 -5.02 17.37 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.24 -6.51 9.50 -15.06 -0.14 -6.65 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.69 -16.36 5.50 -47.23 -0.26 -16.62 16 10 C 0.13 2.43 2.21 -131.81 -0.29 2.14 16 11 C 0.15 2.62 5.78 -4.04 -0.02 2.60 16 12 N -0.70 -11.05 5.48 -60.30 -0.33 -11.38 16 13 C 0.54 8.56 6.47 -10.98 -0.07 8.49 16 14 O -0.54 -10.56 16.50 5.57 0.09 -10.46 16 15 C -0.16 -1.86 1.93 -155.66 -0.30 -2.16 16 16 C -0.11 -1.20 5.51 -26.73 -0.15 -1.35 16 17 C 0.06 0.82 7.41 37.16 0.28 1.10 16 18 F -0.22 -3.39 17.36 2.25 0.04 -3.35 16 19 C -0.15 -1.44 9.76 -26.70 -0.26 -1.70 16 20 C -0.15 -1.36 9.93 -26.70 -0.27 -1.62 16 21 C -0.19 -3.17 10.11 -26.69 -0.27 -3.44 16 22 C -0.19 -2.86 9.93 -26.69 -0.26 -3.12 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.39 9.82 8.04 -40.82 -0.33 9.49 16 25 H 0.06 0.94 7.92 -51.93 -0.41 0.52 16 26 H 0.08 1.76 7.69 -51.93 -0.40 1.36 16 27 H 0.40 5.66 7.92 -40.82 -0.32 5.34 16 28 H 0.08 0.98 7.77 -51.93 -0.40 0.57 16 29 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.24 7.69 -51.93 -0.40 0.84 16 32 H 0.11 1.19 7.86 -51.93 -0.41 0.78 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 37 H 0.08 1.22 8.06 -51.93 -0.42 0.80 16 38 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 337.01 15.07 5.08 5.08 Total: -1.00 -31.21 337.01 -7.55 -38.77 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -6.02 Total: 13.30 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -1.86 Total: -6.01 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.14 Total: -54.69 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.04 Total: -3.35 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.21 -7.55 -38.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499299799.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.777 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds