Wall clock time and date at job start Mon Mar 30 2020 01:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00348 * 2 1 4 4 H 1.48497 * 109.47470 * 95.01059 * 3 2 1 5 5 H 1.48508 * 109.46833 * 215.00974 * 3 2 1 6 6 H 1.48496 * 109.47215 * 335.00403 * 3 2 1 7 7 C 1.38817 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99702 * 174.81512 * 7 2 1 9 9 N 1.36936 * 119.99836 * 354.81840 * 7 2 1 10 10 C 1.46503 * 119.99572 * 185.60601 * 9 7 2 11 11 C 1.53000 * 115.54911 * 64.51820 * 10 9 7 12 12 N 1.46495 * 109.46952 * 83.35394 * 11 10 9 13 13 C 1.34785 * 119.99724 * 184.65883 * 12 11 10 14 14 O 1.21271 * 120.00043 * 5.33321 * 13 12 11 15 15 C 1.50703 * 119.99899 * 185.33157 * 13 12 11 16 16 C 1.53001 * 115.54949 * 302.27864 * 15 13 12 17 17 C 1.53003 * 109.46936 * 295.93109 * 16 15 13 18 18 F 1.39898 * 109.47048 * 180.28285 * 17 16 15 19 19 C 1.52994 * 117.49846 * 156.60809 * 15 13 12 20 20 C 1.52995 * 117.49906 * 87.94800 * 15 13 12 21 21 C 1.53001 * 117.49959 * 278.84282 * 10 9 7 22 22 C 1.53006 * 117.49450 * 210.18518 * 10 9 7 23 23 H 0.97006 * 119.99676 * 359.97438 * 1 2 3 24 24 H 0.96997 * 120.00499 * 5.61051 * 9 7 2 25 25 H 1.09004 * 109.46483 * 203.34992 * 11 10 9 26 26 H 1.08994 * 109.47242 * 323.34901 * 11 10 9 27 27 H 0.96998 * 120.00781 * 4.66141 * 12 11 10 28 28 H 1.09003 * 109.47495 * 55.92845 * 16 15 13 29 29 H 1.08996 * 109.47321 * 175.93244 * 16 15 13 30 30 H 1.08998 * 109.47046 * 300.28023 * 17 16 15 31 31 H 1.09000 * 109.47281 * 60.28618 * 17 16 15 32 32 H 1.09003 * 117.49590 * 359.97438 * 19 15 13 33 33 H 1.08999 * 117.50181 * 145.01648 * 19 15 13 34 34 H 1.08998 * 117.49777 * 214.98210 * 20 15 13 35 35 H 1.09001 * 117.49919 * 359.97209 * 20 15 13 36 36 H 1.09000 * 117.49685 * 0.02562 * 21 10 9 37 37 H 1.08996 * 117.49678 * 145.02381 * 21 10 9 38 38 H 1.09006 * 117.49522 * 214.98026 * 22 10 9 39 39 H 1.08996 * 117.49925 * 359.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6037 1.9853 1.3947 5 1 3.4909 1.4728 -0.8033 6 1 1.3989 2.6809 -0.5916 7 6 2.0102 -1.2022 0.0005 8 1 3.0869 -1.2042 -0.0840 9 7 1.3296 -2.3856 0.1082 10 6 2.0666 -3.6457 0.2324 11 6 2.9035 -3.7979 1.5041 12 7 2.0491 -4.2669 2.5978 13 6 2.5518 -4.3840 3.8429 14 8 3.6812 -4.0104 4.0785 15 6 1.7102 -4.9791 4.9423 16 6 0.3804 -4.2720 5.2117 17 6 0.6503 -2.8505 5.7091 18 9 -0.5655 -2.2061 5.9615 19 6 2.4412 -5.5892 6.1399 20 6 1.7512 -6.4982 5.1198 21 6 2.6111 -4.2752 -1.0514 22 6 1.4125 -4.9058 -0.3380 23 1 -0.4850 0.8401 0.0004 24 1 0.3597 -2.3896 0.1021 25 1 3.7006 -4.5209 1.3300 26 1 3.3385 -2.8346 1.7703 27 1 1.1217 -4.4933 2.4260 28 1 -0.2020 -4.2304 4.2912 29 1 -0.1768 -4.8225 5.9697 30 1 1.2369 -2.8919 6.6268 31 1 1.2031 -2.2984 4.9490 32 1 3.5308 -5.5605 6.1324 33 1 1.9746 -5.4871 7.1197 34 1 0.8309 -6.9938 5.4288 35 1 2.3865 -7.0672 4.4410 36 1 2.4213 -3.7516 -1.9883 37 1 3.5654 -4.7982 -0.9899 38 1 1.5788 -5.8433 0.1926 39 1 0.4337 -4.7973 -0.8053 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499299799.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:19 Heat of formation + Delta-G solvation = -55.756826 kcal Electronic energy + Delta-G solvation = -21149.185612 eV Core-core repulsion = 17813.866440 eV Total energy + Delta-G solvation = -3335.319172 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.148 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.65168 -41.23838 -39.23275 -37.75195 -35.34890 -34.79700 -32.18322 -31.67202 -28.43833 -25.98262 -25.07195 -23.84094 -23.28885 -22.99099 -20.96626 -20.12377 -19.15733 -18.17351 -17.29149 -17.19283 -16.96678 -16.66137 -16.20064 -16.09377 -15.75293 -15.47527 -15.09008 -14.97727 -14.66341 -13.78611 -13.76648 -13.50541 -13.31290 -13.00935 -12.86062 -12.59418 -12.39273 -12.29580 -12.22858 -11.88937 -11.83888 -11.75828 -11.48593 -11.08362 -10.98459 -10.90150 -10.54474 -10.04188 -9.04782 -7.99779 -5.27306 1.41932 1.44616 1.50922 1.54355 2.13198 2.49717 2.69299 3.06328 3.36028 3.40384 3.64467 3.70906 3.74812 3.78040 3.84894 3.95433 4.13194 4.16311 4.22447 4.30307 4.47754 4.72752 4.76313 4.81444 4.83155 4.91435 4.94648 5.01193 5.03602 5.06496 5.19612 5.25212 5.37318 5.48530 5.51977 6.23917 6.58737 7.24418 7.30046 8.04332 8.27103 9.22670 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.014988 B = 0.006140 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.699248 B = 4559.174238 C = 5578.799852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.067 4.067 3 Si 0.960 3.040 4 H -0.293 1.293 5 H -0.270 1.270 6 H -0.293 1.293 7 C -0.231 4.231 8 H 0.069 0.931 9 N -0.699 5.699 10 C 0.098 3.902 11 C 0.158 3.842 12 N -0.700 5.700 13 C 0.539 3.461 14 O -0.588 6.588 15 C -0.175 4.175 16 C -0.097 4.097 17 C 0.057 3.943 18 F -0.231 7.231 19 C -0.143 4.143 20 C -0.124 4.124 21 C -0.185 4.185 22 C -0.152 4.152 23 H 0.251 0.749 24 H 0.377 0.623 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.409 0.591 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.043 0.957 32 H 0.089 0.911 33 H 0.128 0.872 34 H 0.136 0.864 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.915 -16.651 9.977 19.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.260 4.260 3 Si 0.790 3.210 4 H -0.221 1.221 5 H -0.195 1.195 6 H -0.219 1.219 7 C -0.363 4.363 8 H 0.087 0.913 9 N -0.337 5.337 10 C 0.006 3.994 11 C 0.032 3.968 12 N -0.350 5.350 13 C 0.326 3.674 14 O -0.469 6.469 15 C -0.179 4.179 16 C -0.135 4.135 17 C 0.002 3.998 18 F -0.212 7.212 19 C -0.181 4.181 20 C -0.161 4.161 21 C -0.225 4.225 22 C -0.189 4.189 23 H 0.060 0.940 24 H 0.210 0.790 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.245 0.755 28 H 0.097 0.903 29 H 0.135 0.865 30 H 0.114 0.886 31 H 0.061 0.939 32 H 0.107 0.893 33 H 0.146 0.854 34 H 0.154 0.846 35 H 0.118 0.882 36 H 0.096 0.904 37 H 0.126 0.874 38 H 0.140 0.860 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.817 -16.221 10.097 19.193 hybrid contribution -0.296 1.676 -0.481 1.769 sum 1.521 -14.545 9.616 17.503 Atomic orbital electron populations 1.69783 1.06271 1.25996 1.59200 1.25424 0.96268 1.00552 1.03751 0.85350 0.77964 0.80358 0.77329 1.22076 1.19540 1.21926 1.19389 0.91526 0.84992 1.40409 0.91297 1.41822 1.04771 1.00362 1.86777 1.20366 0.99965 0.86654 0.92460 1.20994 0.92228 0.98165 0.85440 1.45838 1.15413 1.66033 1.07697 1.20151 0.86500 0.77479 0.83281 1.90658 1.22000 1.51142 1.83076 1.21233 0.98169 0.99265 0.99207 1.21588 0.94311 0.93682 1.03925 1.22067 0.81899 0.93342 1.02483 1.92737 1.48650 1.83906 1.95927 1.23143 0.99984 1.00871 0.94053 1.23226 1.04124 0.87671 1.01070 1.23399 0.98487 1.03882 0.96736 1.23170 0.97397 0.95457 1.02885 0.94018 0.79000 0.90856 0.94497 0.75508 0.90266 0.86523 0.88636 0.93857 0.89290 0.85375 0.84605 0.88240 0.90357 0.87400 0.85979 0.88974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.38 13.07 21.65 0.28 -58.10 16 2 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 3 Si 0.96 47.14 29.56 68.60 2.03 49.16 16 4 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 5 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 7 C -0.23 -12.74 9.50 84.03 0.80 -11.95 16 8 H 0.07 3.77 7.83 -2.91 -0.02 3.74 16 9 N -0.70 -33.76 5.50 -303.33 -1.67 -35.43 16 10 C 0.10 3.59 2.21 3.61 0.01 3.60 16 11 C 0.16 5.66 5.78 86.38 0.50 6.16 16 12 N -0.70 -21.55 5.48 -463.07 -2.54 -24.09 16 13 C 0.54 16.75 6.47 87.66 0.57 17.31 16 14 O -0.59 -23.26 16.50 -3.00 -0.05 -23.31 16 15 C -0.18 -3.70 1.93 -52.93 -0.10 -3.80 16 16 C -0.10 -1.95 5.51 30.60 0.17 -1.78 16 17 C 0.06 1.49 7.41 71.98 0.53 2.03 16 18 F -0.23 -7.12 17.36 44.97 0.78 -6.34 16 19 C -0.14 -2.43 9.76 30.62 0.30 -2.14 16 20 C -0.12 -1.73 9.93 30.62 0.30 -1.42 16 21 C -0.18 -5.87 10.11 30.62 0.31 -5.56 16 22 C -0.15 -4.21 9.93 30.62 0.30 -3.91 16 23 H 0.25 14.90 8.31 -92.70 -0.77 14.13 16 24 H 0.38 19.50 8.04 -92.71 -0.75 18.76 16 25 H 0.07 2.36 7.92 -2.38 -0.02 2.34 16 26 H 0.04 1.65 7.69 -2.39 -0.02 1.63 16 27 H 0.41 11.07 7.92 -92.71 -0.73 10.33 16 28 H 0.08 1.68 7.77 -2.39 -0.02 1.66 16 29 H 0.12 1.61 8.10 -2.39 -0.02 1.59 16 30 H 0.10 2.07 8.14 -2.39 -0.02 2.06 16 31 H 0.04 1.42 7.69 -2.39 -0.02 1.40 16 32 H 0.09 1.86 7.86 -2.39 -0.02 1.85 16 33 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.11 2.88 8.06 -2.39 -0.02 2.86 16 38 H 0.12 2.59 8.14 -2.38 -0.02 2.57 16 39 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -70.55 337.01 2.57 -67.98 By element: Atomic # 1 Polarization: 35.38 SS G_CDS: -0.42 Total: 34.96 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 4.16 Total: -4.85 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -3.92 Total: -117.61 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.05 Total: -23.31 kcal Atomic # 9 Polarization: -7.12 SS G_CDS: 0.78 Total: -6.34 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.16 kcal Total: -70.55 2.57 -67.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499299799.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.227 kcal (2) G-P(sol) polarization free energy of solvation -70.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds