Wall clock time and date at job start Mon Mar 30 2020 01:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00235 * 2 1 4 4 C 1.50698 * 109.47266 * 179.97438 * 3 2 1 5 5 O 1.21281 * 119.99577 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00305 * 180.02562 * 4 3 2 7 7 C 1.46505 * 120.00199 * 180.02562 * 6 4 3 8 8 H 1.08998 * 110.96662 * 322.30433 * 7 6 4 9 9 C 1.55012 * 111.10302 * 86.45360 * 7 6 4 10 10 O 1.43909 * 105.18602 * 81.96102 * 9 7 6 11 11 C 1.42396 * 109.55637 * 24.28819 * 10 9 7 12 12 C 1.52696 * 116.14428 * 129.85084 * 11 10 9 13 13 N 1.47215 * 87.79259 * 90.70774 * 12 11 10 14 14 C 1.36942 * 135.96985 * 206.44174 * 13 12 11 15 15 H 1.07998 * 120.00200 * 6.36822 * 14 13 12 16 16 C 1.38804 * 119.99746 * 186.10119 * 14 13 12 17 17 N 1.31624 * 120.00304 * 355.21316 * 16 14 13 18 18 Si 1.86799 * 120.00141 * 175.20616 * 16 14 13 19 19 H 1.48505 * 109.46860 * 94.98688 * 18 16 14 20 20 H 1.48495 * 109.47500 * 214.98666 * 18 16 14 21 21 H 1.48503 * 109.46968 * 334.99301 * 18 16 14 22 22 C 1.47208 * 88.05502 * 26.69192 * 13 12 11 23 23 C 1.53661 * 108.53016 * 358.08970 * 11 10 9 24 24 H 1.09000 * 109.47012 * 59.99464 * 1 2 3 25 25 H 1.08996 * 109.47318 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46706 * 299.99932 * 1 2 3 27 27 H 1.09001 * 109.46694 * 60.00287 * 3 2 1 28 28 H 1.08996 * 109.47095 * 300.00498 * 3 2 1 29 29 H 0.96996 * 119.99677 * 359.97438 * 6 4 3 30 30 H 1.09004 * 110.30511 * 323.02553 * 9 7 6 31 31 H 1.09004 * 110.30062 * 200.88488 * 9 7 6 32 32 H 1.08991 * 113.49999 * 335.97303 * 12 11 10 33 33 H 1.08997 * 113.55637 * 205.44410 * 12 11 10 34 34 H 0.96997 * 119.99945 * 180.02562 * 17 16 14 35 35 H 1.08997 * 113.49751 * 88.04670 * 22 13 12 36 36 H 1.09004 * 113.49521 * 218.58296 * 22 13 12 37 37 H 1.09007 * 110.92940 * 97.30081 * 23 11 10 38 38 H 1.09002 * 110.93052 * 220.95825 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0340 0.0914 0.0006 6 7 4.2766 2.2966 0.0013 7 6 5.7370 2.1809 0.0013 8 1 6.0622 1.3469 0.6233 9 6 6.2864 2.0484 -1.4421 10 8 6.3475 3.3945 -1.9473 11 6 6.4480 4.3078 -0.8594 12 6 7.5625 5.3473 -0.9542 13 7 6.5985 6.2365 -1.6231 14 6 6.6701 7.2737 -2.5143 15 1 7.6169 7.5361 -2.9627 16 6 5.5247 7.9843 -2.8456 17 7 4.3551 7.6031 -2.3772 18 14 5.6429 9.4816 -3.9562 19 1 5.3718 9.0795 -5.3598 20 1 4.6442 10.4944 -3.5297 21 1 7.0069 10.0612 -3.8620 22 6 5.5246 5.5264 -0.9093 23 6 6.4049 3.5102 0.4533 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6887 1.8462 0.8900 28 1 1.6886 1.8463 -0.8899 29 1 3.8594 3.1723 0.0009 30 1 5.6111 1.4465 -2.0501 31 1 7.2817 1.6041 -1.4286 32 1 8.3888 5.0411 -1.5955 33 1 7.8958 5.7182 0.0150 34 1 3.5547 8.0995 -2.6091 35 1 5.3044 5.9455 0.0725 36 1 4.6302 5.3715 -1.5129 37 1 7.4107 3.3312 0.8334 38 1 5.7936 4.0195 1.1985 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502446137.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:00 Heat of formation + Delta-G solvation = -80.533168 kcal Electronic energy + Delta-G solvation = -21245.254838 eV Core-core repulsion = 17896.488494 eV Total energy + Delta-G solvation = -3348.766344 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.70551 -40.47063 -38.48989 -37.75968 -35.45845 -34.17545 -32.12950 -30.24275 -29.23241 -27.35475 -26.71779 -26.47088 -23.91472 -22.69245 -21.62535 -20.57169 -18.74147 -18.46880 -18.02203 -17.27736 -17.11906 -16.99074 -16.42473 -16.04325 -15.96576 -15.46760 -15.37569 -14.95467 -14.63492 -14.43879 -13.99556 -13.63184 -13.24576 -13.13208 -13.00248 -12.82423 -12.66324 -12.54175 -12.35657 -12.24081 -11.93417 -11.54890 -11.36139 -10.91061 -10.89143 -10.76607 -10.40956 -9.96704 -8.89328 -7.91479 -5.21840 1.45235 1.46808 1.50884 1.55861 1.82266 2.47599 2.81071 3.11360 3.29458 3.36939 3.62092 3.66432 3.75847 3.79970 4.05148 4.21162 4.26705 4.37656 4.53143 4.58133 4.68140 4.70745 4.76844 4.78285 4.87212 4.92881 4.93556 5.03544 5.20144 5.26520 5.43031 5.51666 5.94570 6.02617 6.35185 6.48309 6.92835 7.14757 7.60559 8.62139 9.27129 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.021902 B = 0.004621 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.118598 B = 6057.966121 C = 6991.078539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.042 3.958 4 C 0.514 3.486 5 O -0.569 6.569 6 N -0.707 5.707 7 C 0.119 3.881 8 H 0.119 0.881 9 C 0.035 3.965 10 O -0.372 6.372 11 C 0.073 3.927 12 C 0.107 3.893 13 N -0.641 5.641 14 C -0.230 4.230 15 H 0.079 0.921 16 C -0.064 4.064 17 N -0.950 5.950 18 Si 0.976 3.024 19 H -0.290 1.290 20 H -0.289 1.289 21 H -0.269 1.269 22 C 0.154 3.846 23 C -0.126 4.126 24 H 0.054 0.946 25 H 0.098 0.902 26 H 0.061 0.939 27 H 0.112 0.888 28 H 0.097 0.903 29 H 0.413 0.587 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.249 0.751 35 H 0.044 0.956 36 H 0.035 0.965 37 H 0.123 0.877 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.817 -11.619 9.402 15.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.322 6.322 3 C -0.038 4.038 4 C 0.301 3.699 5 O -0.447 6.447 6 N -0.360 5.360 7 C 0.014 3.986 8 H 0.137 0.863 9 C -0.043 4.043 10 O -0.291 6.291 11 C 0.032 3.968 12 C -0.018 4.018 13 N -0.367 5.367 14 C -0.358 4.358 15 H 0.097 0.903 16 C -0.257 4.257 17 N -0.598 5.598 18 Si 0.804 3.196 19 H -0.217 1.217 20 H -0.216 1.216 21 H -0.193 1.193 22 C 0.028 3.972 23 C -0.165 4.165 24 H 0.072 0.928 25 H 0.116 0.884 26 H 0.079 0.921 27 H 0.130 0.870 28 H 0.115 0.885 29 H 0.249 0.751 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.141 0.859 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.443 -12.235 8.981 15.563 hybrid contribution -0.506 1.565 -0.793 1.825 sum -3.949 -10.670 8.188 14.018 Atomic orbital electron populations 1.23043 0.78357 1.04237 1.01546 1.87942 1.22087 1.26393 1.95786 1.22362 0.89427 0.86859 1.05113 1.20786 0.90023 0.83891 0.75157 1.90686 1.75658 1.27969 1.50416 1.45825 1.06421 1.09281 1.74509 1.22557 0.79877 0.99824 0.96310 0.86299 1.24027 1.01406 0.83910 0.94914 1.88420 1.94084 1.15711 1.30901 1.23155 0.97711 0.89548 0.86364 1.22946 0.93708 0.88606 0.96523 1.45761 1.04945 1.38329 1.47646 1.19276 0.94940 1.05639 1.15984 0.90296 1.25580 0.95101 1.02226 1.02801 1.69993 0.97713 1.41914 1.50215 0.85097 0.77498 0.79059 0.77904 1.21717 1.21572 1.19345 1.22404 0.93135 0.87202 0.94438 1.23198 1.04084 0.93067 0.96125 0.92782 0.88375 0.92076 0.87028 0.88477 0.75087 0.91077 0.89411 0.93966 0.91040 0.94220 0.93796 0.94658 0.85854 0.87377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 11.01 113.37 1.25 1.60 16 2 O -0.40 -9.80 10.24 -129.94 -1.33 -11.13 16 3 C 0.04 0.85 6.42 71.24 0.46 1.30 16 4 C 0.51 13.73 7.91 87.66 0.69 14.42 16 5 O -0.57 -19.78 16.25 16.01 0.26 -19.52 16 6 N -0.71 -17.03 5.24 -435.26 -2.28 -19.31 16 7 C 0.12 2.88 3.37 46.53 0.16 3.04 16 8 H 0.12 2.63 7.74 -2.39 -0.02 2.61 16 9 C 0.03 1.02 7.49 72.67 0.54 1.56 16 10 O -0.37 -14.55 11.18 -148.98 -1.67 -16.21 16 11 C 0.07 2.59 1.75 -10.68 -0.02 2.57 16 12 C 0.11 4.26 8.20 83.38 0.68 4.95 16 13 N -0.64 -33.35 3.78 -739.08 -2.80 -36.15 16 14 C -0.23 -13.28 10.74 84.03 0.90 -12.38 16 15 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 16 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 17 N -0.95 -56.97 11.62 21.65 0.25 -56.72 16 18 Si 0.98 46.13 29.56 68.60 2.03 48.16 16 19 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 20 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 C 0.15 6.95 6.81 83.48 0.57 7.51 16 23 C -0.13 -2.91 5.97 31.67 0.19 -2.72 16 24 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.41 9.20 8.62 -92.71 -0.80 8.40 16 30 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 31 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 2.46 8.13 -2.39 -0.02 2.44 16 34 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 35 H 0.04 1.89 7.95 -2.39 -0.02 1.87 16 36 H 0.03 1.83 7.32 -2.38 -0.02 1.82 16 37 H 0.12 2.18 8.13 -2.38 -0.02 2.16 16 38 H 0.11 2.17 7.81 -2.39 -0.02 2.16 16 Total: -1.00 -78.62 321.31 0.62 -78.00 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.26 Total: 14.23 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: 5.89 Total: 18.65 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -4.82 Total: -112.18 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -2.74 Total: -46.87 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -78.62 0.62 -78.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502446137.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.534 kcal (2) G-P(sol) polarization free energy of solvation -78.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds