Wall clock time and date at job start Mon Mar 30 2020 01:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36941 * 120.00527 * 2 1 4 4 H 1.07997 * 120.00268 * 201.84772 * 3 2 1 5 5 C 1.38808 * 119.99775 * 21.83942 * 3 2 1 6 6 N 1.31624 * 119.99896 * 13.23293 * 5 3 2 7 7 Si 1.86793 * 120.00375 * 193.23242 * 5 3 2 8 8 H 1.48507 * 109.47281 * 60.00171 * 7 5 3 9 9 H 1.48502 * 109.47702 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47365 * 300.00364 * 7 5 3 11 11 C 1.46509 * 120.00022 * 179.97438 * 2 1 3 12 12 H 1.09001 * 109.33085 * 179.78528 * 11 2 1 13 13 C 1.53068 * 109.39795 * 59.99910 * 11 2 1 14 14 C 1.53346 * 108.42515 * 190.97272 * 13 11 2 15 15 C 1.52913 * 108.67305 * 67.52925 * 14 13 11 16 16 N 1.45751 * 110.49131 * 309.24490 * 15 14 13 17 17 C 1.46502 * 117.94953 * 199.07258 * 16 15 14 18 18 C 1.53005 * 109.46709 * 90.00449 * 17 16 15 19 19 C 1.50696 * 109.46881 * 179.97438 * 18 17 16 20 20 O 1.20827 * 120.00037 * 0.02562 * 19 18 17 21 21 O 1.34230 * 120.00106 * 179.97438 * 19 18 17 22 22 C 1.33358 * 124.10238 * 19.36195 * 16 15 14 23 23 O 1.21280 * 118.24573 * 177.49471 * 22 16 15 24 24 H 1.09001 * 109.46947 * 274.38260 * 1 2 3 25 25 H 1.09002 * 109.47181 * 34.37850 * 1 2 3 26 26 H 1.08995 * 109.47345 * 154.38306 * 1 2 3 27 27 H 0.97006 * 120.00118 * 179.97438 * 6 5 3 28 28 H 1.09003 * 109.67448 * 71.23635 * 13 11 2 29 29 H 1.08997 * 109.70489 * 310.72310 * 13 11 2 30 30 H 1.09001 * 109.59984 * 307.77042 * 14 13 11 31 31 H 1.08999 * 109.60174 * 187.29090 * 14 13 11 32 32 H 1.09006 * 109.29811 * 188.93278 * 15 14 13 33 33 H 1.08999 * 109.13399 * 69.45658 * 15 14 13 34 34 H 1.09003 * 109.47044 * 210.00131 * 17 16 15 35 35 H 1.08997 * 109.46968 * 330.00809 * 17 16 15 36 36 H 1.08994 * 109.46966 * 299.99766 * 18 17 16 37 37 H 1.08994 * 109.46759 * 60.00053 * 18 17 16 38 38 H 0.96698 * 117.00167 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1715 1.2194 -0.3480 5 6 1.5305 2.3449 0.4472 6 7 0.3944 2.2712 1.1078 7 14 2.3093 4.0092 0.1116 8 1 2.4328 4.2114 -1.3545 9 1 1.4571 5.0800 0.6882 10 1 3.6569 4.0597 0.7335 11 6 2.1975 -1.2688 0.0006 12 1 3.2686 -1.0670 -0.0034 13 6 1.8265 -2.0706 -1.2494 14 6 2.3803 -3.4922 -1.0954 15 6 1.6228 -4.1932 0.0328 16 7 1.6082 -3.3627 1.2305 17 6 1.3189 -4.0110 2.5121 18 6 2.6259 -4.4872 3.1492 19 6 2.3284 -5.1534 4.4677 20 8 1.1880 -5.2390 4.8576 21 8 3.3303 -5.6527 5.2086 22 6 1.8362 -2.0488 1.2321 23 8 1.7523 -1.4530 2.2851 24 1 -0.3633 0.0785 1.0247 25 1 -0.3634 0.8482 -0.5803 26 1 -0.3634 -0.9266 -0.4443 27 1 -0.0382 3.0811 1.4207 28 1 2.2632 -1.6000 -2.1303 29 1 0.7421 -2.1085 -1.3533 30 1 3.4414 -3.4467 -0.8504 31 1 2.2408 -4.0418 -2.0263 32 1 2.1095 -5.1422 0.2583 33 1 0.5981 -4.3813 -0.2878 34 1 0.8288 -3.2994 3.1767 35 1 0.6627 -4.8655 2.3470 36 1 3.1159 -5.1986 2.4846 37 1 3.2821 -3.6327 3.3141 38 1 3.0903 -6.0704 6.0470 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598376542.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:59 Heat of formation + Delta-G solvation = -97.336254 kcal Electronic energy + Delta-G solvation = -21638.926702 eV Core-core repulsion = 18289.431721 eV Total energy + Delta-G solvation = -3349.494980 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.48200 -39.80327 -36.36245 -35.90062 -35.74389 -33.50768 -31.25790 -30.19203 -28.08087 -26.00171 -25.26277 -23.98118 -21.95552 -21.41794 -20.56580 -18.37888 -17.91785 -16.84679 -16.76682 -16.37482 -15.79443 -15.60281 -15.18159 -14.53264 -13.91052 -13.85090 -13.46639 -13.31794 -12.98408 -12.89173 -12.60895 -12.17912 -12.04095 -11.64399 -11.41381 -11.29859 -11.04535 -10.88803 -10.77156 -10.69701 -10.61913 -10.46333 -10.35791 -9.90273 -9.82465 -8.90900 -8.49246 -8.33943 -6.75955 -5.68006 -3.14900 2.12393 2.81002 3.35696 3.43638 3.47572 3.49440 3.60344 4.51559 4.78785 4.89961 4.97422 5.03465 5.22702 5.24830 5.35527 5.43148 5.52985 5.59803 5.67678 5.78613 5.92179 5.95527 6.10124 6.14248 6.23647 6.38452 6.51142 6.65819 6.81164 6.86736 7.38959 7.76082 7.78301 7.84895 7.99167 8.39282 8.95646 9.24438 9.85378 10.33228 11.36173 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.022664 B = 0.005148 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.149138 B = 5437.278456 C = 6109.634548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.569 5.569 3 C -0.261 4.261 4 H 0.071 0.929 5 C 0.008 3.992 6 N -0.898 5.898 7 Si 0.908 3.092 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.167 3.833 12 H 0.092 0.908 13 C -0.136 4.136 14 C -0.132 4.132 15 C 0.119 3.881 16 N -0.617 5.617 17 C 0.118 3.882 18 C -0.127 4.127 19 C 0.485 3.515 20 O -0.516 6.516 21 O -0.520 6.520 22 C 0.488 3.512 23 O -0.522 6.522 24 H 0.033 0.967 25 H 0.048 0.952 26 H -0.002 1.002 27 H 0.253 0.747 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.675 -17.280 -1.465 17.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.289 5.289 3 C -0.390 4.390 4 H 0.089 0.911 5 C -0.192 4.192 6 N -0.541 5.541 7 Si 0.737 3.263 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.055 3.945 12 H 0.110 0.890 13 C -0.176 4.176 14 C -0.170 4.170 15 C -0.004 4.004 16 N -0.354 5.354 17 C -0.006 4.006 18 C -0.166 4.166 19 C 0.327 3.673 20 O -0.404 6.404 21 O -0.331 6.331 22 C 0.275 3.725 23 O -0.395 6.395 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.016 0.984 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.122 0.878 37 H 0.129 0.871 38 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 4.281 -16.529 -1.126 17.111 hybrid contribution 0.168 0.490 0.636 0.820 sum 4.449 -16.038 -0.490 16.651 Atomic orbital electron populations 1.20831 0.82198 0.95521 0.99748 1.43907 1.01936 0.99277 1.83741 1.19168 0.98156 0.84591 1.37101 0.91121 1.25088 0.97816 0.98631 0.97659 1.70107 1.18484 1.27149 1.38346 0.86298 0.78516 0.83578 0.77858 1.20971 1.21624 1.20866 1.20465 0.98062 0.86945 0.89077 0.89012 1.22228 1.01842 0.93648 0.99901 1.21853 1.00222 0.97205 0.97716 1.21294 1.00292 0.93499 0.85334 1.47869 1.72527 1.08266 1.06700 1.21101 0.93848 0.98607 0.87031 1.21753 1.02502 1.01810 0.90581 1.23463 0.82545 0.74886 0.86391 1.90734 1.22979 1.54833 1.71818 1.84553 1.41562 1.70617 1.36415 1.22528 0.76118 0.80357 0.93529 1.90692 1.49314 1.66945 1.32523 0.94914 0.93358 0.98375 0.93632 0.90940 0.91356 0.91267 0.90448 0.91619 0.92385 0.88715 0.90432 0.87814 0.87116 0.73352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.14 8.29 59.84 0.50 4.63 16 2 N -0.57 -14.57 2.56 -175.06 -0.45 -15.02 16 3 C -0.26 -7.29 9.60 -15.06 -0.14 -7.44 16 4 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 5 C 0.01 0.22 5.09 -17.43 -0.09 0.13 16 6 N -0.90 -27.26 10.66 55.49 0.59 -26.67 16 7 Si 0.91 22.21 29.57 -169.99 -5.03 17.18 16 8 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 9 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 C 0.17 3.44 2.81 -69.29 -0.19 3.25 16 12 H 0.09 1.87 7.85 -51.93 -0.41 1.46 16 13 C -0.14 -2.12 5.45 -26.52 -0.14 -2.27 16 14 C -0.13 -1.47 6.02 -26.60 -0.16 -1.63 16 15 C 0.12 1.34 6.32 -4.49 -0.03 1.32 16 16 N -0.62 -9.58 2.81 -174.96 -0.49 -10.08 16 17 C 0.12 1.72 4.51 -4.04 -0.02 1.71 16 18 C -0.13 -1.53 6.13 -27.88 -0.17 -1.70 16 19 C 0.49 5.98 8.33 36.00 0.30 6.28 16 20 O -0.52 -7.94 16.74 -18.75 -0.31 -8.25 16 21 O -0.52 -4.96 13.42 -39.26 -0.53 -5.49 16 22 C 0.49 10.06 6.65 -11.86 -0.08 9.98 16 23 O -0.52 -13.43 15.88 5.56 0.09 -13.34 16 24 H 0.03 0.95 7.41 -51.93 -0.38 0.57 16 25 H 0.05 1.30 7.22 -51.93 -0.37 0.93 16 26 H 0.00 -0.05 6.29 -51.93 -0.33 -0.38 16 27 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.07 1.12 6.33 -51.93 -0.33 0.79 16 30 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.09 1.74 7.08 -51.93 -0.37 1.37 16 35 H 0.08 0.98 7.97 -51.93 -0.41 0.56 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.41 2.13 9.10 45.56 0.41 2.54 16 LS Contribution 314.47 15.07 4.74 4.74 Total: -1.00 -36.26 314.47 -6.31 -42.58 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -4.69 Total: 0.08 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: -0.23 Total: 14.26 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -0.35 Total: -51.76 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.75 Total: -27.08 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -36.26 -6.31 -42.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598376542.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.760 kcal (2) G-P(sol) polarization free energy of solvation -36.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds