Wall clock time and date at job start Mon Mar 30 2020 01:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36941 * 120.00527 * 2 1 4 4 H 1.07997 * 120.00268 * 201.84772 * 3 2 1 5 5 C 1.38808 * 119.99775 * 21.83942 * 3 2 1 6 6 N 1.31624 * 119.99896 * 13.23293 * 5 3 2 7 7 Si 1.86793 * 120.00375 * 193.23242 * 5 3 2 8 8 H 1.48507 * 109.47281 * 60.00171 * 7 5 3 9 9 H 1.48502 * 109.47702 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47365 * 300.00364 * 7 5 3 11 11 C 1.46509 * 120.00022 * 179.97438 * 2 1 3 12 12 H 1.09001 * 109.33085 * 179.78528 * 11 2 1 13 13 C 1.53068 * 109.39795 * 59.99910 * 11 2 1 14 14 C 1.53346 * 108.42515 * 190.97272 * 13 11 2 15 15 C 1.52913 * 108.67305 * 67.52925 * 14 13 11 16 16 N 1.45751 * 110.49131 * 309.24490 * 15 14 13 17 17 C 1.46502 * 117.94953 * 199.07258 * 16 15 14 18 18 C 1.53005 * 109.46709 * 90.00449 * 17 16 15 19 19 C 1.50696 * 109.46881 * 179.97438 * 18 17 16 20 20 O 1.20827 * 120.00037 * 0.02562 * 19 18 17 21 21 O 1.34230 * 120.00106 * 179.97438 * 19 18 17 22 22 C 1.33358 * 124.10238 * 19.36195 * 16 15 14 23 23 O 1.21280 * 118.24573 * 177.49471 * 22 16 15 24 24 H 1.09001 * 109.46947 * 274.38260 * 1 2 3 25 25 H 1.09002 * 109.47181 * 34.37850 * 1 2 3 26 26 H 1.08995 * 109.47345 * 154.38306 * 1 2 3 27 27 H 0.97006 * 120.00118 * 179.97438 * 6 5 3 28 28 H 1.09003 * 109.67448 * 71.23635 * 13 11 2 29 29 H 1.08997 * 109.70489 * 310.72310 * 13 11 2 30 30 H 1.09001 * 109.59984 * 307.77042 * 14 13 11 31 31 H 1.08999 * 109.60174 * 187.29090 * 14 13 11 32 32 H 1.09006 * 109.29811 * 188.93278 * 15 14 13 33 33 H 1.08999 * 109.13399 * 69.45658 * 15 14 13 34 34 H 1.09003 * 109.47044 * 210.00131 * 17 16 15 35 35 H 1.08997 * 109.46968 * 330.00809 * 17 16 15 36 36 H 1.08994 * 109.46966 * 299.99766 * 18 17 16 37 37 H 1.08994 * 109.46759 * 60.00053 * 18 17 16 38 38 H 0.96698 * 117.00167 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1715 1.2194 -0.3480 5 6 1.5305 2.3449 0.4472 6 7 0.3944 2.2712 1.1078 7 14 2.3093 4.0092 0.1116 8 1 2.4328 4.2114 -1.3545 9 1 1.4571 5.0800 0.6882 10 1 3.6569 4.0597 0.7335 11 6 2.1975 -1.2688 0.0006 12 1 3.2686 -1.0670 -0.0034 13 6 1.8265 -2.0706 -1.2494 14 6 2.3803 -3.4922 -1.0954 15 6 1.6228 -4.1932 0.0328 16 7 1.6082 -3.3627 1.2305 17 6 1.3189 -4.0110 2.5121 18 6 2.6259 -4.4872 3.1492 19 6 2.3284 -5.1534 4.4677 20 8 1.1880 -5.2390 4.8576 21 8 3.3303 -5.6527 5.2086 22 6 1.8362 -2.0488 1.2321 23 8 1.7523 -1.4530 2.2851 24 1 -0.3633 0.0785 1.0247 25 1 -0.3634 0.8482 -0.5803 26 1 -0.3634 -0.9266 -0.4443 27 1 -0.0382 3.0811 1.4207 28 1 2.2632 -1.6000 -2.1303 29 1 0.7421 -2.1085 -1.3533 30 1 3.4414 -3.4467 -0.8504 31 1 2.2408 -4.0418 -2.0263 32 1 2.1095 -5.1422 0.2583 33 1 0.5981 -4.3813 -0.2878 34 1 0.8288 -3.2994 3.1767 35 1 0.6627 -4.8655 2.3470 36 1 3.1159 -5.1986 2.4846 37 1 3.2821 -3.6327 3.3141 38 1 3.0903 -6.0704 6.0470 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598376542.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:58 Heat of formation + Delta-G solvation = -124.550004 kcal Electronic energy + Delta-G solvation = -21640.106778 eV Core-core repulsion = 18289.431721 eV Total energy + Delta-G solvation = -3350.675057 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.67751 -41.04848 -37.66214 -37.38121 -37.08378 -35.00769 -32.99449 -31.50276 -29.61444 -28.08618 -26.45335 -25.54455 -23.12631 -23.03424 -21.75758 -19.53228 -19.09717 -18.77557 -17.89366 -17.68638 -17.21245 -16.86024 -16.72508 -16.08888 -15.53478 -15.13835 -14.86962 -14.52062 -14.41237 -14.33103 -14.00059 -13.82275 -13.30992 -13.06114 -12.85828 -12.61463 -12.59042 -12.40522 -12.34208 -12.17805 -12.11876 -12.02325 -11.77241 -11.70354 -11.52888 -10.69561 -10.45200 -9.64894 -8.82139 -7.82855 -5.32779 1.15667 1.45354 1.48974 1.55705 1.75659 1.85827 2.45845 2.52191 3.31752 3.58222 3.74343 3.79138 3.99115 4.06653 4.14195 4.28147 4.33092 4.49470 4.51246 4.68555 4.74025 4.77955 4.85625 4.92963 5.04635 5.17535 5.22386 5.32874 5.49668 5.57058 5.59824 5.65001 5.66886 6.26229 6.60801 6.95658 7.09580 7.42406 7.82218 8.24579 9.20506 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.022664 B = 0.005148 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.149138 B = 5437.278456 C = 6109.634548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.588 5.588 3 C -0.267 4.267 4 H 0.080 0.920 5 C -0.056 4.056 6 N -0.940 5.940 7 Si 0.976 3.024 8 H -0.268 1.268 9 H -0.297 1.297 10 H -0.277 1.277 11 C 0.157 3.843 12 H 0.089 0.911 13 C -0.126 4.126 14 C -0.121 4.121 15 C 0.106 3.894 16 N -0.604 5.604 17 C 0.119 3.881 18 C -0.119 4.119 19 C 0.493 3.507 20 O -0.552 6.552 21 O -0.511 6.511 22 C 0.488 3.512 23 O -0.589 6.589 24 H -0.015 1.015 25 H 0.024 0.976 26 H 0.032 0.968 27 H 0.246 0.754 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.105 0.895 36 H 0.146 0.854 37 H 0.093 0.907 38 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.439 -20.215 -3.323 21.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.310 5.310 3 C -0.397 4.397 4 H 0.098 0.902 5 C -0.251 4.251 6 N -0.586 5.586 7 Si 0.804 3.196 8 H -0.194 1.194 9 H -0.224 1.224 10 H -0.202 1.202 11 C 0.046 3.954 12 H 0.106 0.894 13 C -0.165 4.165 14 C -0.159 4.159 15 C -0.015 4.015 16 N -0.338 5.338 17 C -0.005 4.005 18 C -0.158 4.158 19 C 0.336 3.664 20 O -0.444 6.444 21 O -0.324 6.324 22 C 0.275 3.725 23 O -0.467 6.467 24 H 0.003 0.997 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.136 0.864 32 H 0.130 0.870 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.123 0.877 36 H 0.164 0.836 37 H 0.112 0.888 38 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 6.095 -19.579 -3.022 20.727 hybrid contribution -0.318 1.212 1.235 1.759 sum 5.778 -18.367 -1.787 19.337 Atomic orbital electron populations 1.20424 0.82909 0.96063 0.96674 1.44071 1.01874 1.00712 1.84299 1.19626 0.98451 0.85882 1.35786 0.90232 1.25963 0.98579 1.02470 0.98083 1.70329 1.20376 1.27408 1.40441 0.85213 0.77403 0.78742 0.78273 1.19366 1.22390 1.20240 1.20776 0.97434 0.85844 0.91323 0.89352 1.22091 1.01516 0.95972 0.96917 1.21876 1.00369 0.94092 0.99557 1.21779 1.01950 0.94334 0.83389 1.47732 1.70167 1.07005 1.08867 1.21098 0.95601 0.97937 0.85823 1.21625 1.00664 1.02118 0.91383 1.23408 0.82218 0.74260 0.86468 1.90733 1.24500 1.56466 1.72660 1.84496 1.40345 1.70166 1.37417 1.22253 0.75869 0.82052 0.92316 1.90674 1.52622 1.68895 1.34557 0.99654 0.95685 0.95009 0.94480 0.90377 0.92232 0.90230 0.86357 0.87033 0.91059 0.93530 0.87689 0.83621 0.88825 0.70979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.85 8.29 127.77 1.06 10.91 16 2 N -0.59 -30.91 2.56 -707.77 -1.81 -32.72 16 3 C -0.27 -15.30 9.60 84.03 0.81 -14.50 16 4 H 0.08 4.28 7.81 -2.91 -0.02 4.26 16 5 C -0.06 -3.31 5.09 84.86 0.43 -2.87 16 6 N -0.94 -60.05 10.66 21.65 0.23 -59.82 16 7 Si 0.98 46.86 29.57 68.60 2.03 48.89 16 8 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 9 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 C 0.16 6.41 2.81 44.11 0.12 6.53 16 12 H 0.09 3.59 7.85 -2.39 -0.02 3.57 16 13 C -0.13 -3.58 5.45 30.73 0.17 -3.41 16 14 C -0.12 -2.08 6.02 30.68 0.18 -1.89 16 15 C 0.11 1.87 6.32 86.49 0.55 2.42 16 16 N -0.60 -17.59 2.81 -826.62 -2.32 -19.91 16 17 C 0.12 3.34 4.51 86.38 0.39 3.73 16 18 C -0.12 -2.62 6.13 29.85 0.18 -2.44 16 19 C 0.49 11.35 8.33 71.23 0.59 11.94 16 20 O -0.55 -16.66 16.74 21.96 0.37 -16.29 16 21 O -0.51 -8.49 13.42 -51.42 -0.69 -9.18 16 22 C 0.49 20.25 6.65 87.72 0.58 20.83 16 23 O -0.59 -31.90 15.88 -3.03 -0.05 -31.95 16 24 H -0.01 -0.93 7.41 -2.39 -0.02 -0.95 16 25 H 0.02 1.40 7.22 -2.39 -0.02 1.38 16 26 H 0.03 1.43 6.29 -2.39 -0.02 1.41 16 27 H 0.25 15.29 8.31 -92.70 -0.77 14.51 16 28 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.06 1.81 6.33 -2.39 -0.02 1.79 16 30 H 0.08 1.28 8.12 -2.39 -0.02 1.26 16 31 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.11 1.10 8.10 -2.38 -0.02 1.08 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.05 1.78 7.08 -2.39 -0.02 1.76 16 35 H 0.10 2.36 7.97 -2.39 -0.02 2.35 16 36 H 0.15 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.43 3.43 9.10 -74.06 -0.67 2.75 16 Total: -1.00 -86.20 314.47 3.22 -82.98 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 0.40 Total: 6.76 kcal Atomic # 6 Polarization: 26.18 SS G_CDS: 5.07 Total: 31.25 kcal Atomic # 7 Polarization: -108.55 SS G_CDS: -3.90 Total: -112.46 kcal Atomic # 8 Polarization: -57.05 SS G_CDS: -0.37 Total: -57.42 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -86.20 3.22 -82.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598376542.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.572 kcal (2) G-P(sol) polarization free energy of solvation -86.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds