Wall clock time and date at job start Mon Mar 30 2020 01:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 119.99814 * 2 1 4 4 H 1.48491 * 109.47268 * 274.99263 * 3 2 1 5 5 H 1.48503 * 109.46989 * 34.99088 * 3 2 1 6 6 H 1.48497 * 109.46914 * 154.98998 * 3 2 1 7 7 C 1.38812 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99746 * 187.05123 * 7 2 1 9 9 N 1.36938 * 119.99767 * 7.04853 * 7 2 1 10 10 C 1.47020 * 125.64910 * 354.78768 * 9 7 2 11 11 C 1.54328 * 107.26980 * 178.98174 * 10 9 7 12 12 C 1.55154 * 102.94196 * 337.80922 * 11 10 9 13 13 H 1.09003 * 111.00350 * 153.57529 * 12 11 10 14 14 N 1.46500 * 111.00395 * 277.42193 * 12 11 10 15 15 C 1.34784 * 120.00155 * 204.99813 * 14 12 11 16 16 O 1.21276 * 119.99864 * 0.02562 * 15 14 12 17 17 C 1.50694 * 119.99901 * 180.02562 * 15 14 12 18 18 C 1.53001 * 112.85093 * 48.80667 * 17 15 14 19 19 F 1.39899 * 109.47405 * 309.66580 * 18 17 15 20 20 C 1.53780 * 113.61551 * 277.49836 * 17 15 14 21 21 C 1.53777 * 87.08540 * 220.01871 * 20 17 15 22 22 C 1.53779 * 113.61445 * 180.02562 * 17 15 14 23 23 C 1.47427 * 125.64559 * 174.83557 * 9 7 2 24 24 H 0.96999 * 120.00130 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.88220 * 59.57057 * 10 9 7 26 26 H 1.08989 * 110.01333 * 298.47593 * 10 9 7 27 27 H 1.08994 * 110.72299 * 219.44599 * 11 10 9 28 28 H 1.09001 * 110.71740 * 96.17061 * 11 10 9 29 29 H 0.96999 * 119.99765 * 25.00904 * 14 12 11 30 30 H 1.09004 * 109.47274 * 69.66961 * 18 17 15 31 31 H 1.09006 * 109.47204 * 189.66651 * 18 17 15 32 32 H 1.08998 * 113.61662 * 334.57150 * 20 17 15 33 33 H 1.09008 * 113.61363 * 105.47158 * 20 17 15 34 34 H 1.09002 * 113.61989 * 270.88704 * 21 20 17 35 35 H 1.08996 * 113.61786 * 139.97762 * 21 20 17 36 36 H 1.09001 * 113.61230 * 254.53123 * 22 17 15 37 37 H 1.09005 * 113.61693 * 25.43056 * 22 17 15 38 38 H 1.09006 * 110.36168 * 85.24897 * 23 9 7 39 39 H 1.09002 * 110.36998 * 322.92662 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3921 2.1074 -1.3947 5 1 1.5042 2.6200 0.8029 6 1 3.5964 1.4121 0.5919 7 6 2.0103 -1.2021 -0.0005 8 1 3.0842 -1.2056 0.1143 9 7 1.3333 -2.3835 -0.1466 10 6 -0.1282 -2.5323 -0.2030 11 6 -0.4287 -4.0332 -0.3995 12 6 0.8911 -4.5749 -1.0093 13 1 1.0202 -5.6335 -0.7836 14 7 0.9375 -4.3389 -2.4544 15 6 1.6945 -5.1282 -3.2423 16 8 2.3369 -6.0340 -2.7548 17 6 1.7426 -4.8850 -4.7287 18 6 1.9997 -3.4190 -5.0829 19 9 1.1083 -2.6051 -4.3757 20 6 0.5625 -5.5077 -5.4933 21 6 1.5751 -5.8936 -6.5844 22 6 2.6496 -5.8700 -5.4849 23 6 1.9495 -3.7169 -0.2723 24 1 -0.4850 0.8400 0.0004 25 1 -0.5268 -1.9616 -1.0418 26 1 -0.5749 -2.1835 0.7280 27 1 -1.2591 -4.1729 -1.0915 28 1 -0.6372 -4.5131 0.5568 29 1 0.4235 -3.6145 -2.8443 30 1 3.0230 -3.1547 -4.8160 31 1 1.8541 -3.2728 -6.1532 32 1 0.1179 -6.3647 -4.9874 33 1 -0.1777 -4.7785 -5.8228 34 1 1.7115 -5.1250 -7.3452 35 1 1.4051 -6.8837 -7.0073 36 1 3.5948 -5.4335 -5.8077 37 1 2.7754 -6.8261 -4.9768 38 1 2.1562 -4.1337 0.7135 39 1 2.8658 -3.6576 -0.8598 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690105719.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:31 Heat of formation + Delta-G solvation = -62.518981 kcal Electronic energy + Delta-G solvation = -22016.496324 eV Core-core repulsion = 18680.883924 eV Total energy + Delta-G solvation = -3335.612401 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.148 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.78529 -41.46199 -39.60972 -38.20729 -35.37983 -33.60722 -31.11847 -29.93485 -28.86910 -26.71942 -26.48411 -25.51626 -22.60495 -21.93679 -21.28073 -19.96786 -18.92635 -18.32810 -17.58673 -16.92878 -16.74192 -16.56282 -16.47826 -15.78558 -15.56764 -15.39276 -15.08987 -14.99627 -14.05751 -13.87809 -13.61523 -13.42812 -13.10772 -12.89708 -12.86852 -12.77970 -12.35053 -12.22334 -12.08874 -12.02483 -11.97136 -11.85433 -11.62255 -11.33056 -11.30897 -10.70307 -10.62562 -10.03286 -8.86601 -7.86234 -5.19345 1.44424 1.46163 1.54899 1.56249 2.27289 2.48801 3.26344 3.32776 3.37886 3.48979 3.66163 3.73598 3.83749 3.86901 4.06612 4.09789 4.26800 4.29282 4.43945 4.64222 4.69216 4.72739 4.77006 4.84902 4.87051 4.97253 4.99900 5.03521 5.11862 5.14444 5.43011 5.44863 5.59353 5.65645 5.75148 6.19214 6.62337 7.10801 7.24249 7.76420 8.41748 9.24681 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.023114 B = 0.005991 C = 0.005357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.082937 B = 4672.855291 C = 5225.947364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.058 4.058 3 Si 0.974 3.026 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.272 1.272 7 C -0.243 4.243 8 H 0.073 0.927 9 N -0.618 5.618 10 C 0.185 3.815 11 C -0.135 4.135 12 C 0.135 3.865 13 H 0.101 0.899 14 N -0.701 5.701 15 C 0.521 3.479 16 O -0.583 6.583 17 C -0.153 4.153 18 C 0.082 3.918 19 F -0.223 7.223 20 C -0.116 4.116 21 C -0.122 4.122 22 C -0.107 4.107 23 C 0.124 3.876 24 H 0.248 0.752 25 H 0.018 0.982 26 H 0.009 0.991 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.408 0.592 30 H 0.079 0.921 31 H 0.127 0.873 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.032 0.968 39 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.449 -11.143 -14.573 18.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.251 4.251 3 Si 0.802 3.198 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.197 1.197 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.345 5.345 10 C 0.060 3.940 11 C -0.173 4.173 12 C 0.029 3.971 13 H 0.119 0.881 14 N -0.353 5.353 15 C 0.308 3.692 16 O -0.464 6.464 17 C -0.157 4.157 18 C 0.027 3.973 19 F -0.205 7.205 20 C -0.153 4.153 21 C -0.159 4.159 22 C -0.145 4.145 23 C -0.002 4.002 24 H 0.057 0.943 25 H 0.036 0.964 26 H 0.027 0.973 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.247 0.753 30 H 0.097 0.903 31 H 0.145 0.855 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.125 0.875 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.050 0.950 39 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.821 -11.529 -14.174 18.289 hybrid contribution 0.157 1.574 0.606 1.694 sum 0.979 -9.955 -13.568 16.857 Atomic orbital electron populations 1.70163 1.06092 1.25277 1.57842 1.25557 0.96568 1.00599 1.02383 0.85134 0.77801 0.79539 0.77313 1.21366 1.21844 1.19677 1.19338 0.91299 0.84010 1.42568 0.90917 1.44660 1.02357 1.01540 1.85914 1.20923 0.83624 0.91447 0.97981 1.23076 0.96248 0.96259 1.01731 1.21988 0.95924 0.98935 0.80293 0.88108 1.46292 1.47849 1.33998 1.07194 1.20854 0.77946 0.80973 0.89428 1.90616 1.45200 1.33842 1.76698 1.23030 1.04443 0.97826 0.90355 1.22033 0.92431 0.84646 0.98200 1.92680 1.71520 1.74851 1.81422 1.22930 0.95267 1.00662 0.96489 1.22865 0.93563 1.03855 0.95666 1.22796 0.97937 0.97975 0.95749 1.22037 0.95205 0.86197 0.96787 0.94299 0.96404 0.97299 0.89271 0.88940 0.75253 0.90288 0.85535 0.89974 0.89324 0.87458 0.89306 0.89474 0.89887 0.95032 0.95659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.04 10.36 21.65 0.22 -56.82 16 2 C -0.06 -3.33 5.48 84.86 0.46 -2.87 16 3 Si 0.97 46.62 29.56 68.60 2.03 48.65 16 4 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.24 -14.11 10.27 84.03 0.86 -13.24 16 8 H 0.07 4.14 7.84 -2.91 -0.02 4.11 16 9 N -0.62 -32.73 3.39 -691.98 -2.35 -35.08 16 10 C 0.19 9.16 5.37 86.73 0.47 9.62 16 11 C -0.13 -4.92 6.55 31.78 0.21 -4.71 16 12 C 0.13 5.06 3.43 46.38 0.16 5.22 16 13 H 0.10 3.57 7.54 -2.39 -0.02 3.55 16 14 N -0.70 -24.96 4.91 -435.97 -2.14 -27.10 16 15 C 0.52 17.35 6.93 87.65 0.61 17.96 16 16 O -0.58 -22.73 15.54 -3.02 -0.05 -22.78 16 17 C -0.15 -3.60 1.15 -52.40 -0.06 -3.66 16 18 C 0.08 1.83 6.85 71.98 0.49 2.33 16 19 F -0.22 -7.14 14.52 44.97 0.65 -6.48 16 20 C -0.12 -2.06 7.20 31.12 0.22 -1.84 16 21 C -0.12 -1.55 7.73 31.11 0.24 -1.31 16 22 C -0.11 -2.01 6.99 31.11 0.22 -1.79 16 23 C 0.12 5.59 6.93 86.85 0.60 6.19 16 24 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 25 H 0.02 0.98 7.30 -2.39 -0.02 0.96 16 26 H 0.01 0.49 7.61 -2.39 -0.02 0.47 16 27 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 28 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 29 H 0.41 14.88 6.15 -92.71 -0.57 14.31 16 30 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.13 1.78 7.34 -2.38 -0.02 1.76 16 32 H 0.08 1.58 8.09 -2.39 -0.02 1.57 16 33 H 0.09 1.41 8.10 -2.38 -0.02 1.39 16 34 H 0.11 0.91 7.64 -2.39 -0.02 0.89 16 35 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.09 1.40 8.10 -2.39 -0.02 1.38 16 37 H 0.08 1.89 7.43 -2.38 -0.02 1.87 16 38 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -71.72 314.78 3.33 -68.40 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.48 Total: 19.30 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 4.48 Total: 11.91 kcal Atomic # 7 Polarization: -114.73 SS G_CDS: -4.27 Total: -119.00 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.05 Total: -22.78 kcal Atomic # 9 Polarization: -7.14 SS G_CDS: 0.65 Total: -6.48 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -71.72 3.33 -68.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690105719.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.876 kcal (2) G-P(sol) polarization free energy of solvation -71.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds