Wall clock time and date at job start Mon Mar 30 2020 01:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 117.00338 * 2 1 4 4 O 1.20825 * 119.99737 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00116 * 179.97438 * 3 2 1 6 6 H 1.09003 * 115.54570 * 34.32707 * 5 3 2 7 7 C 1.53000 * 117.51763 * 248.62379 * 5 3 2 8 8 C 1.52996 * 117.49889 * 179.97438 * 5 3 2 9 9 H 1.09003 * 117.49785 * 359.97438 * 8 5 3 10 10 C 1.50696 * 117.50013 * 215.00572 * 8 5 3 11 11 O 1.21278 * 120.00358 * 359.97438 * 10 8 5 12 12 N 1.34780 * 120.00249 * 180.02562 * 10 8 5 13 13 C 1.46497 * 120.00221 * 179.97438 * 12 10 8 14 14 C 1.53003 * 109.47064 * 179.97438 * 13 12 10 15 15 N 1.46497 * 109.47064 * 179.97438 * 14 13 12 16 16 C 1.46504 * 120.00019 * 270.00221 * 15 14 13 17 17 C 1.36937 * 120.00075 * 89.99726 * 15 14 13 18 18 H 1.07995 * 119.99725 * 22.35002 * 17 15 14 19 19 C 1.38812 * 119.99779 * 202.34044 * 17 15 14 20 20 N 1.31615 * 120.00483 * 11.36005 * 19 17 15 21 21 Si 1.86806 * 119.99831 * 191.35753 * 19 17 15 22 22 H 1.48500 * 109.47140 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47352 * 120.00204 * 21 19 17 24 24 H 1.48500 * 109.46952 * 240.00514 * 21 19 17 25 25 H 1.09004 * 109.47049 * 300.00525 * 1 2 3 26 26 H 1.08998 * 109.46984 * 60.00135 * 1 2 3 27 27 H 1.08998 * 109.47428 * 180.02562 * 1 2 3 28 28 H 1.09002 * 117.49598 * 145.02840 * 7 5 3 29 29 H 1.08995 * 117.49827 * 0.02562 * 7 5 3 30 30 H 0.97004 * 119.99617 * 359.97438 * 12 10 8 31 31 H 1.08997 * 109.46799 * 299.99862 * 13 12 10 32 32 H 1.09003 * 109.47084 * 59.99735 * 13 12 10 33 33 H 1.08999 * 109.47146 * 300.00203 * 14 13 12 34 34 H 1.09003 * 109.47192 * 60.00039 * 14 13 12 35 35 H 1.08999 * 109.47510 * 94.20391 * 16 15 14 36 36 H 1.08996 * 109.47278 * 214.21024 * 16 15 14 37 37 H 1.09004 * 109.46639 * 334.20585 * 16 15 14 38 38 H 0.97000 * 120.00097 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 4.0785 0.4882 -0.5536 7 6 4.2459 1.8059 1.2643 8 6 4.2008 2.6670 -0.0001 9 1 3.5297 3.5259 -0.0013 10 6 5.4860 2.8456 -0.7664 11 8 5.9787 1.9048 -1.3520 12 7 6.0886 4.0507 -0.8003 13 6 7.3382 4.2243 -1.5448 14 6 7.8071 5.6756 -1.4231 15 7 9.0571 5.8489 -2.1671 16 6 10.3431 5.6347 -1.4989 17 6 9.0235 6.2111 -3.4873 18 1 8.1541 6.7107 -3.8882 19 6 10.1071 5.9362 -4.3102 20 7 11.0660 5.1379 -3.8911 21 14 10.2044 6.6991 -6.0126 22 1 9.0106 7.5521 -6.2417 23 1 11.4318 7.5289 -6.1138 24 1 10.2483 5.6233 -7.0353 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 5.2052 1.3687 1.5415 29 1 3.6045 2.0981 2.0957 30 1 5.6947 4.8032 -0.3316 31 1 8.0999 3.5604 -1.1359 32 1 7.1720 3.9833 -2.5948 33 1 7.0453 6.3391 -1.8322 34 1 7.9733 5.9169 -0.3732 35 1 10.6742 4.6100 -1.6677 36 1 11.0822 6.3266 -1.9028 37 1 10.2298 5.8083 -0.4287 38 1 11.8230 4.9456 -4.4663 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713447887.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:22 Heat of formation + Delta-G solvation = -71.463536 kcal Electronic energy + Delta-G solvation = -20068.787345 eV Core-core repulsion = 16720.414290 eV Total energy + Delta-G solvation = -3348.373055 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.98390 -39.61238 -37.23791 -36.25186 -35.69031 -34.13816 -31.33630 -28.75106 -28.21190 -25.91571 -25.25821 -24.20485 -22.65983 -20.87219 -20.67315 -19.75828 -18.37838 -17.19456 -16.79560 -16.64882 -16.51922 -15.60578 -15.10526 -14.71773 -14.34678 -14.27115 -13.66665 -13.58189 -13.20077 -12.93987 -12.62654 -12.44738 -12.28416 -12.25595 -11.24412 -11.13560 -11.09407 -10.98493 -10.87212 -10.82863 -10.75258 -10.60011 -10.28945 -9.98529 -9.92635 -9.68306 -8.68582 -8.57207 -6.83666 -5.75613 -3.22891 1.74310 2.23470 2.60435 3.34213 3.39490 3.45031 3.47070 3.58771 4.25513 4.42237 4.47159 4.55802 4.77134 4.81760 4.85722 5.01029 5.18337 5.27731 5.39636 5.61331 5.62425 5.64715 5.86125 5.95764 6.03449 6.26316 6.65122 6.70380 6.72021 6.95176 7.35720 7.43412 7.70643 7.75926 7.79582 8.35307 8.43780 9.19916 9.81838 10.29703 11.29491 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033886 B = 0.003038 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.098034 B = 9215.293043 C = 9554.464600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.353 6.353 3 C 0.495 3.505 4 O -0.506 6.506 5 C -0.141 4.141 6 H 0.151 0.849 7 C -0.116 4.116 8 C -0.153 4.153 9 H 0.138 0.862 10 C 0.535 3.465 11 O -0.539 6.539 12 N -0.716 5.716 13 C 0.094 3.906 14 C 0.144 3.856 15 N -0.597 5.597 16 C 0.162 3.838 17 C -0.260 4.260 18 H 0.071 0.929 19 C 0.003 3.997 20 N -0.906 5.906 21 Si 0.907 3.093 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.289 1.289 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.118 0.882 29 H 0.112 0.888 30 H 0.398 0.602 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.043 0.957 35 H 0.030 0.970 36 H 0.047 0.953 37 H -0.002 1.002 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.272 -6.941 12.173 22.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.269 6.269 3 C 0.339 3.661 4 O -0.394 6.394 5 C -0.161 4.161 6 H 0.168 0.832 7 C -0.153 4.153 8 C -0.174 4.174 9 H 0.156 0.844 10 C 0.320 3.680 11 O -0.417 6.417 12 N -0.366 5.366 13 C -0.032 4.032 14 C 0.015 3.985 15 N -0.319 5.319 16 C 0.018 3.982 17 C -0.389 4.389 18 H 0.089 0.911 19 C -0.196 4.196 20 N -0.550 5.550 21 Si 0.737 3.263 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.216 1.216 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.121 0.879 28 H 0.137 0.863 29 H 0.130 0.870 30 H 0.231 0.769 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.048 0.952 36 H 0.066 0.934 37 H 0.016 0.984 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.923 -7.331 11.637 21.807 hybrid contribution -0.334 0.605 -0.892 1.128 sum -17.257 -6.726 10.745 21.413 Atomic orbital electron populations 1.23310 0.76022 1.03860 1.02670 1.86499 1.23527 1.32949 1.83901 1.22563 0.90309 0.81335 0.71924 1.90671 1.66889 1.36408 1.45459 1.21663 0.88129 1.00213 1.06074 0.83169 1.23094 1.02696 0.99456 0.90069 1.22402 0.98169 0.95302 1.01552 0.84421 1.19407 0.84356 0.83452 0.80798 1.90727 1.65608 1.40234 1.45118 1.46089 1.26546 1.10806 1.53197 1.22586 0.82900 1.01316 0.96369 1.21003 0.90079 0.91985 0.95416 1.43947 0.99628 1.79568 1.08780 1.20854 0.86816 1.00494 0.90085 1.19268 1.03055 1.31402 0.85186 0.91144 1.25076 0.98362 0.98084 0.98050 1.70075 1.11528 1.36910 1.36523 0.86147 0.77549 0.78531 0.84084 1.20269 1.21559 1.21625 0.91816 0.91726 0.87903 0.86334 0.87010 0.76895 0.92051 0.91207 0.93251 0.93898 0.95207 0.93400 0.98353 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.31 16 2 O -0.35 -3.60 10.57 -39.27 -0.41 -4.02 16 3 C 0.50 5.70 7.74 36.00 0.28 5.98 16 4 O -0.51 -6.84 16.01 -18.75 -0.30 -7.14 16 5 C -0.14 -1.55 5.81 -91.78 -0.53 -2.08 16 6 H 0.15 1.74 7.67 -51.93 -0.40 1.34 16 7 C -0.12 -1.02 9.94 -26.71 -0.27 -1.28 16 8 C -0.15 -1.73 5.70 -91.76 -0.52 -2.25 16 9 H 0.14 1.42 7.67 -51.93 -0.40 1.02 16 10 C 0.54 8.21 7.61 -10.99 -0.08 8.12 16 11 O -0.54 -10.59 16.26 5.56 0.09 -10.50 16 12 N -0.72 -10.56 5.56 -60.30 -0.33 -10.90 16 13 C 0.09 1.80 6.00 -4.04 -0.02 1.78 16 14 C 0.14 2.80 5.82 -4.04 -0.02 2.78 16 15 N -0.60 -14.85 2.93 -181.12 -0.53 -15.38 16 16 C 0.16 3.96 9.01 59.85 0.54 4.50 16 17 C -0.26 -7.10 9.67 -15.06 -0.15 -7.24 16 18 H 0.07 1.88 7.84 -52.49 -0.41 1.47 16 19 C 0.00 0.08 5.13 -17.43 -0.09 -0.01 16 20 N -0.91 -26.50 10.59 55.49 0.59 -25.91 16 21 Si 0.91 21.93 29.57 -169.99 -5.03 16.91 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 26 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 27 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.40 4.47 8.47 -40.82 -0.35 4.12 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 33 H 0.05 0.92 8.03 -51.93 -0.42 0.50 16 34 H 0.04 0.73 7.86 -51.93 -0.41 0.33 16 35 H 0.03 0.79 7.42 -51.93 -0.39 0.40 16 36 H 0.05 1.25 7.19 -51.93 -0.37 0.88 16 37 H 0.00 -0.04 7.84 -51.93 -0.41 -0.45 16 38 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 331.07 15.07 4.99 4.99 Total: -1.00 -33.92 331.07 -6.38 -40.30 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -5.64 Total: 0.04 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 0.20 Total: 11.60 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -0.28 Total: -52.18 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.62 Total: -21.65 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.92 -6.38 -40.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713447887.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.161 kcal (2) G-P(sol) polarization free energy of solvation -33.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds