Wall clock time and date at job start Mon Mar 30 2020 01:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47123 * 2 1 4 4 C 1.52998 * 109.46800 * 239.99589 * 2 1 3 5 5 C 1.50697 * 109.46607 * 119.99998 * 2 1 3 6 6 C 1.38345 * 119.86798 * 60.00250 * 5 2 1 7 7 C 1.37976 * 120.14316 * 179.97438 * 6 5 2 8 8 C 1.39501 * 119.85731 * 0.02562 * 7 6 5 9 9 C 1.47996 * 120.13395 * 179.97438 * 8 7 6 10 10 C 1.36388 * 126.48112 * 179.70959 * 9 8 7 11 11 C 1.41914 * 105.46113 * 179.97438 * 10 9 8 12 12 C 1.41473 * 126.43353 * 180.13151 * 11 10 9 13 13 H 1.07996 * 120.00405 * 0.28434 * 12 11 10 14 14 C 1.39814 * 119.99306 * 180.28253 * 12 11 10 15 15 N 1.30908 * 120.00536 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99431 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47428 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47323 * 120.00459 * 16 14 12 19 19 H 1.48501 * 109.46942 * 239.99931 * 16 14 12 20 20 N 1.32818 * 107.12327 * 0.35146 * 11 10 9 21 21 N 1.28447 * 110.25116 * 359.77754 * 20 11 10 22 22 H 0.96999 * 124.93691 * 180.02562 * 21 20 11 23 23 C 1.39498 * 119.72784 * 0.28153 * 8 7 6 24 24 C 1.37983 * 119.85863 * 359.39316 * 23 8 7 25 25 H 1.09006 * 109.46874 * 300.00435 * 1 2 3 26 26 H 1.09002 * 109.46851 * 60.00035 * 1 2 3 27 27 H 1.08996 * 109.47363 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46668 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47228 * 299.99734 * 3 2 1 30 30 H 1.08993 * 109.47318 * 60.00136 * 3 2 1 31 31 H 1.08996 * 109.47765 * 299.99935 * 4 2 1 32 32 H 1.09002 * 109.47111 * 60.00535 * 4 2 1 33 33 H 1.09005 * 109.46686 * 180.02562 * 4 2 1 34 34 H 1.08008 * 119.92547 * 359.97438 * 6 5 2 35 35 H 1.08000 * 120.07078 * 180.02562 * 7 6 5 36 36 H 1.08004 * 127.27052 * 0.02562 * 10 9 8 37 37 H 0.96996 * 120.00429 * 179.97438 * 15 14 12 38 38 H 1.08002 * 120.07088 * 179.72328 * 23 8 7 39 39 H 1.08001 * 119.92991 * 180.30068 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.6963 -2.0349 1.4466 7 6 2.1534 -2.6911 2.5710 8 6 2.9555 -2.0158 3.4912 9 6 3.4487 -2.7134 4.6996 10 6 4.2404 -2.1834 5.6756 11 6 4.4394 -3.2312 6.6119 12 6 5.1964 -3.1594 7.8049 13 1 5.6881 -2.2374 8.0778 14 6 5.3079 -4.2822 8.6305 15 7 4.7124 -5.3999 8.2995 16 14 6.3081 -4.1876 10.2054 17 1 6.8764 -2.8233 10.3498 18 1 5.4316 -4.4838 11.3670 19 1 7.4109 -5.1807 10.1517 20 7 3.7853 -4.2931 6.1553 21 7 3.2029 -4.0131 5.0451 22 1 2.6664 -4.6336 4.5274 23 6 3.2855 -0.6784 3.2709 24 6 2.8276 -0.0354 2.1391 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.6767 -1.7490 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 1.0749 -2.5565 0.7336 35 1 1.8908 -3.7252 2.7384 36 1 4.6325 -1.1783 5.7258 37 1 4.7900 -6.1790 8.8721 38 1 3.9024 -0.1490 3.9819 39 1 3.0864 0.9986 1.9650 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072220381.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:53 Heat of formation + Delta-G solvation = 71.476837 kcal Electronic energy + Delta-G solvation = -19545.591347 eV Core-core repulsion = 16646.558666 eV Total energy + Delta-G solvation = -2899.032681 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.52085 -39.46934 -36.27886 -33.31490 -31.12068 -30.93670 -30.00137 -27.45807 -27.37335 -27.34671 -25.54732 -22.92195 -22.09044 -20.14688 -19.51328 -19.00631 -17.44703 -16.27824 -15.67464 -14.95509 -14.59226 -14.48675 -14.37890 -13.67720 -13.65931 -13.45741 -13.25526 -12.74231 -12.71890 -12.25733 -12.11054 -12.03488 -11.81464 -11.77169 -11.25590 -11.11933 -11.05120 -10.86872 -10.62219 -10.42974 -10.34239 -9.84423 -9.31467 -8.83392 -8.69390 -8.48731 -7.62491 -6.96766 -6.26816 -4.14037 1.40328 1.66945 3.16561 3.26656 3.31571 3.41070 4.21622 4.30546 4.43325 4.43918 4.55411 4.67094 4.89870 5.16478 5.19096 5.22331 5.40895 5.42948 5.47200 5.62323 5.63233 5.70941 5.71453 5.73308 5.82505 5.90494 5.93388 6.14540 6.18010 6.21917 6.27269 6.60305 6.66180 6.72641 6.81572 7.16353 7.26398 7.36504 7.48903 7.77486 8.39142 8.78322 8.99494 9.28042 10.21593 10.71586 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.050440 B = 0.003402 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.983652 B = 8229.634372 C = 8593.552637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.026 4.026 3 C -0.143 4.143 4 C -0.138 4.138 5 C -0.094 4.094 6 C -0.107 4.107 7 C -0.131 4.131 8 C 0.017 3.983 9 C 0.004 3.996 10 C -0.259 4.259 11 C 0.188 3.812 12 C -0.451 4.451 13 H 0.079 0.921 14 C 0.071 3.929 15 N -0.785 5.785 16 Si 0.904 3.096 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.279 1.279 20 N -0.309 5.309 21 N -0.429 5.429 22 H 0.417 0.583 23 C -0.110 4.110 24 C -0.113 4.113 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.126 0.874 37 H 0.267 0.733 38 H 0.126 0.874 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.441 9.306 -15.859 19.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.026 4.026 3 C -0.200 4.200 4 C -0.195 4.195 5 C -0.095 4.095 6 C -0.125 4.125 7 C -0.151 4.151 8 C 0.015 3.985 9 C -0.121 4.121 10 C -0.291 4.291 11 C 0.040 3.960 12 C -0.490 4.490 13 H 0.098 0.902 14 C -0.146 4.146 15 N -0.414 5.414 16 Si 0.730 3.270 17 H -0.188 1.188 18 H -0.204 1.204 19 H -0.204 1.204 20 N -0.143 5.143 21 N -0.136 5.136 22 H 0.257 0.743 23 C -0.129 4.129 24 C -0.131 4.131 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.144 0.856 37 H 0.078 0.922 38 H 0.144 0.856 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.713 7.940 -15.520 18.681 hybrid contribution 0.372 0.412 0.369 0.666 sum -6.341 8.351 -15.151 18.426 Atomic orbital electron populations 1.21888 0.94028 1.01952 1.01614 1.19437 0.95430 0.94909 0.92874 1.21955 1.01265 0.95125 1.01704 1.21887 1.01304 1.00154 0.96140 1.19680 0.99402 0.94155 0.96228 1.20722 1.00297 0.94247 0.97236 1.21031 0.99501 0.99560 0.94958 1.18254 0.95229 0.93148 0.91909 1.19634 1.06837 0.88225 0.97423 1.21599 1.08836 1.00543 0.98172 1.19262 0.95185 0.87097 0.94423 1.18571 1.29343 0.97989 1.03084 0.90240 1.25745 0.95104 0.95026 0.98726 1.69973 1.35079 1.01012 1.35287 0.86332 0.79788 0.78968 0.81898 1.18824 1.20433 1.20428 1.74691 1.17124 1.24749 0.97719 1.43740 1.42052 1.08162 1.19659 0.74339 1.21144 1.00465 0.93732 0.97592 1.21031 0.98146 0.99832 0.94089 0.92490 0.92678 0.92525 0.92226 0.92691 0.92223 0.92528 0.92679 0.92488 0.86639 0.86882 0.85645 0.92237 0.85628 0.85865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.29 37.16 0.31 -0.91 16 2 C -0.03 -0.26 0.85 -155.66 -0.13 -0.39 16 3 C -0.14 -1.23 7.13 37.16 0.26 -0.96 16 4 C -0.14 -1.21 8.29 37.16 0.31 -0.91 16 5 C -0.09 -1.17 4.77 -104.54 -0.50 -1.67 16 6 C -0.11 -1.40 8.69 -39.64 -0.34 -1.75 16 7 C -0.13 -2.02 9.71 -39.21 -0.38 -2.40 16 8 C 0.02 0.30 5.87 -104.96 -0.62 -0.32 16 9 C 0.00 0.10 6.98 -82.36 -0.57 -0.48 16 10 C -0.26 -6.37 10.33 -38.84 -0.40 -6.77 16 11 C 0.19 5.33 6.77 -84.80 -0.57 4.76 16 12 C -0.45 -12.87 9.41 -37.76 -0.36 -13.23 16 13 H 0.08 2.14 7.84 -52.49 -0.41 1.72 16 14 C 0.07 1.97 5.49 -17.36 -0.10 1.87 16 15 N -0.78 -22.63 11.96 55.54 0.66 -21.96 16 16 Si 0.90 20.24 29.56 -169.99 -5.02 15.21 16 17 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 18 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 20 N -0.31 -8.69 10.46 32.29 0.34 -8.35 16 21 N -0.43 -9.95 6.81 33.32 0.23 -9.73 16 22 H 0.42 8.07 8.07 -190.45 -1.54 6.53 16 23 C -0.11 -1.75 9.57 -39.21 -0.38 -2.13 16 24 C -0.11 -1.50 8.96 -39.63 -0.36 -1.86 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.49 7.37 -51.93 -0.38 0.11 16 28 H 0.06 0.51 7.51 -51.93 -0.39 0.12 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.51 7.50 -51.93 -0.39 0.12 16 31 H 0.06 0.49 7.38 -51.93 -0.38 0.11 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.12 1.26 7.08 -52.48 -0.37 0.89 16 35 H 0.11 1.60 7.18 -52.49 -0.38 1.22 16 36 H 0.13 2.77 7.37 -52.48 -0.39 2.38 16 37 H 0.27 7.07 8.30 -40.82 -0.34 6.73 16 38 H 0.13 1.94 7.08 -52.49 -0.37 1.57 16 39 H 0.12 1.36 5.87 -52.49 -0.31 1.05 16 LS Contribution 320.49 15.07 4.83 4.83 Total: -1.00 -31.88 320.49 -9.35 -41.23 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.56 Total: 5.90 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: -3.82 Total: -27.12 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 1.23 Total: -40.05 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.88 -9.35 -41.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072220381.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.707 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds