Wall clock time and date at job start Mon Mar 30 2020 01:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47123 * 2 1 4 4 C 1.52998 * 109.46800 * 239.99589 * 2 1 3 5 5 C 1.50697 * 109.46607 * 119.99998 * 2 1 3 6 6 C 1.38345 * 119.86798 * 60.00250 * 5 2 1 7 7 C 1.37976 * 120.14316 * 179.97438 * 6 5 2 8 8 C 1.39501 * 119.85731 * 0.02562 * 7 6 5 9 9 C 1.47996 * 120.13395 * 179.97438 * 8 7 6 10 10 C 1.36388 * 126.48112 * 179.70959 * 9 8 7 11 11 C 1.41914 * 105.46113 * 179.97438 * 10 9 8 12 12 C 1.41473 * 126.43353 * 180.13151 * 11 10 9 13 13 H 1.07996 * 120.00405 * 0.28434 * 12 11 10 14 14 C 1.39814 * 119.99306 * 180.28253 * 12 11 10 15 15 N 1.30908 * 120.00536 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99431 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47428 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47323 * 120.00459 * 16 14 12 19 19 H 1.48501 * 109.46942 * 239.99931 * 16 14 12 20 20 N 1.32818 * 107.12327 * 0.35146 * 11 10 9 21 21 N 1.28447 * 110.25116 * 359.77754 * 20 11 10 22 22 H 0.96999 * 124.93691 * 180.02562 * 21 20 11 23 23 C 1.39498 * 119.72784 * 0.28153 * 8 7 6 24 24 C 1.37983 * 119.85863 * 359.39316 * 23 8 7 25 25 H 1.09006 * 109.46874 * 300.00435 * 1 2 3 26 26 H 1.09002 * 109.46851 * 60.00035 * 1 2 3 27 27 H 1.08996 * 109.47363 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46668 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47228 * 299.99734 * 3 2 1 30 30 H 1.08993 * 109.47318 * 60.00136 * 3 2 1 31 31 H 1.08996 * 109.47765 * 299.99935 * 4 2 1 32 32 H 1.09002 * 109.47111 * 60.00535 * 4 2 1 33 33 H 1.09005 * 109.46686 * 180.02562 * 4 2 1 34 34 H 1.08008 * 119.92547 * 359.97438 * 6 5 2 35 35 H 1.08000 * 120.07078 * 180.02562 * 7 6 5 36 36 H 1.08004 * 127.27052 * 0.02562 * 10 9 8 37 37 H 0.96996 * 120.00429 * 179.97438 * 15 14 12 38 38 H 1.08002 * 120.07088 * 179.72328 * 23 8 7 39 39 H 1.08001 * 119.92991 * 180.30068 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.6963 -2.0349 1.4466 7 6 2.1534 -2.6911 2.5710 8 6 2.9555 -2.0158 3.4912 9 6 3.4487 -2.7134 4.6996 10 6 4.2404 -2.1834 5.6756 11 6 4.4394 -3.2312 6.6119 12 6 5.1964 -3.1594 7.8049 13 1 5.6881 -2.2374 8.0778 14 6 5.3079 -4.2822 8.6305 15 7 4.7124 -5.3999 8.2995 16 14 6.3081 -4.1876 10.2054 17 1 6.8764 -2.8233 10.3498 18 1 5.4316 -4.4838 11.3670 19 1 7.4109 -5.1807 10.1517 20 7 3.7853 -4.2931 6.1553 21 7 3.2029 -4.0131 5.0451 22 1 2.6664 -4.6336 4.5274 23 6 3.2855 -0.6784 3.2709 24 6 2.8276 -0.0354 2.1391 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.6767 -1.7490 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 1.0749 -2.5565 0.7336 35 1 1.8908 -3.7252 2.7384 36 1 4.6325 -1.1783 5.7258 37 1 4.7900 -6.1790 8.8721 38 1 3.9024 -0.1490 3.9819 39 1 3.0864 0.9986 1.9650 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072220381.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:53 Heat of formation + Delta-G solvation = 53.633036 kcal Electronic energy + Delta-G solvation = -19546.365112 eV Core-core repulsion = 16646.558666 eV Total energy + Delta-G solvation = -2899.806446 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.34212 -40.57939 -37.27062 -35.34145 -32.49393 -32.33530 -31.73847 -28.90123 -28.20705 -28.03693 -27.56150 -24.19577 -23.31651 -21.91998 -21.24150 -20.04768 -18.92610 -18.32141 -16.83664 -16.41491 -15.99219 -15.72900 -15.56305 -15.06817 -14.95624 -14.61693 -14.44388 -14.24185 -13.95481 -13.65466 -13.30772 -12.96836 -12.86019 -12.74058 -12.59663 -12.48390 -12.40310 -12.23099 -11.80499 -11.75045 -11.49662 -11.30610 -11.25023 -10.47205 -10.27075 -9.84250 -9.62664 -8.64213 -8.30562 -6.27015 0.11526 0.51889 1.40184 1.43369 1.59453 1.84654 2.34167 2.37102 2.73604 3.01368 3.60563 3.67640 3.82956 3.94792 4.09964 4.18448 4.18617 4.43433 4.53063 4.60499 4.68953 4.84862 4.85578 4.95559 4.96470 5.06202 5.09279 5.09442 5.16491 5.25670 5.28187 5.32733 5.42762 5.43619 5.50450 5.57712 5.75364 5.79090 5.84627 6.09985 6.37556 6.90162 6.94671 7.23089 8.24689 8.69963 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.050440 B = 0.003402 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.983652 B = 8229.634372 C = 8593.552637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.027 4.027 3 C -0.145 4.145 4 C -0.137 4.137 5 C -0.077 4.077 6 C -0.108 4.108 7 C -0.129 4.129 8 C -0.025 4.025 9 C 0.036 3.964 10 C -0.295 4.295 11 C 0.153 3.847 12 C -0.487 4.487 13 H 0.083 0.917 14 C 0.020 3.980 15 N -0.825 5.825 16 Si 0.987 3.013 17 H -0.255 1.255 18 H -0.271 1.271 19 H -0.271 1.271 20 N -0.355 5.355 21 N -0.428 5.428 22 H 0.430 0.570 23 C -0.113 4.113 24 C -0.114 4.114 25 H 0.049 0.951 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.143 0.857 35 H 0.121 0.879 36 H 0.139 0.861 37 H 0.272 0.728 38 H 0.123 0.877 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.190 10.830 -17.962 22.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.027 4.027 3 C -0.202 4.202 4 C -0.195 4.195 5 C -0.078 4.078 6 C -0.125 4.125 7 C -0.149 4.149 8 C -0.027 4.027 9 C -0.091 4.091 10 C -0.325 4.325 11 C 0.004 3.996 12 C -0.526 4.526 13 H 0.101 0.899 14 C -0.193 4.193 15 N -0.455 5.455 16 Si 0.809 3.191 17 H -0.178 1.178 18 H -0.196 1.196 19 H -0.196 1.196 20 N -0.189 5.189 21 N -0.137 5.137 22 H 0.273 0.727 23 C -0.133 4.133 24 C -0.132 4.132 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.161 0.839 35 H 0.139 0.861 36 H 0.157 0.843 37 H 0.082 0.918 38 H 0.141 0.859 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.480 9.469 -17.654 21.384 hybrid contribution 0.461 0.059 0.719 0.856 sum -7.019 9.529 -16.935 20.660 Atomic orbital electron populations 1.21893 0.93036 1.02278 1.02251 1.19545 0.96140 0.95393 0.91663 1.21978 1.01281 0.94373 1.02599 1.21892 1.00899 1.00381 0.96288 1.20170 0.97118 0.93930 0.96563 1.21027 1.00098 0.94650 0.96747 1.21210 0.98572 1.00053 0.95019 1.18224 0.98524 0.94235 0.91720 1.20085 1.04017 0.87299 0.97655 1.21779 1.11042 1.00936 0.98786 1.19704 0.95892 0.88511 0.95475 1.18976 1.30508 0.98861 1.04250 0.89928 1.26735 0.96025 0.94166 1.02385 1.70104 1.36595 1.01850 1.36951 0.85086 0.77945 0.79379 0.76724 1.17822 1.19642 1.19637 1.74549 1.18849 1.25713 0.99768 1.43685 1.41911 1.09096 1.18978 0.72719 1.21269 1.00374 0.93085 0.98541 1.21311 0.97775 1.00988 0.93101 0.93166 0.90837 0.92398 0.92286 0.90993 0.92281 0.92401 0.90839 0.93166 0.83886 0.86106 0.84295 0.91838 0.85931 0.83365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.29 71.98 0.60 -1.30 16 2 C -0.03 -0.43 0.85 -52.93 -0.05 -0.47 16 3 C -0.15 -1.94 7.13 71.98 0.51 -1.42 16 4 C -0.14 -1.89 8.29 71.98 0.60 -1.30 16 5 C -0.08 -1.68 4.77 -19.81 -0.09 -1.78 16 6 C -0.11 -2.51 8.69 22.23 0.19 -2.32 16 7 C -0.13 -3.81 9.71 22.51 0.22 -3.59 16 8 C -0.03 -0.90 5.87 -20.08 -0.12 -1.01 16 9 C 0.04 1.66 6.98 40.54 0.28 1.94 16 10 C -0.29 -15.12 10.33 22.75 0.24 -14.89 16 11 C 0.15 9.12 6.77 40.70 0.28 9.40 16 12 C -0.49 -29.04 9.41 23.45 0.22 -28.82 16 13 H 0.08 4.63 7.84 -2.91 -0.02 4.61 16 14 C 0.02 1.16 5.49 85.21 0.47 1.63 16 15 N -0.83 -49.36 11.96 21.81 0.26 -49.10 16 16 Si 0.99 42.53 29.56 68.60 2.03 44.56 16 17 H -0.25 -10.43 7.11 99.48 0.71 -9.73 16 18 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 20 N -0.36 -20.91 10.46 -51.75 -0.54 -21.45 16 21 N -0.43 -20.60 6.81 -48.50 -0.33 -20.93 16 22 H 0.43 17.18 8.07 -220.00 -1.78 15.41 16 23 C -0.11 -3.52 9.57 22.51 0.22 -3.31 16 24 C -0.11 -2.77 8.96 22.24 0.20 -2.57 16 25 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.79 7.37 -2.39 -0.02 0.77 16 28 H 0.06 0.80 7.51 -2.39 -0.02 0.79 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.80 7.50 -2.39 -0.02 0.79 16 31 H 0.06 0.79 7.38 -2.39 -0.02 0.77 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.14 2.57 7.08 -2.91 -0.02 2.55 16 35 H 0.12 3.28 7.18 -2.91 -0.02 3.25 16 36 H 0.14 6.42 7.37 -2.91 -0.02 6.40 16 37 H 0.27 14.85 8.30 -92.71 -0.77 14.08 16 38 H 0.12 3.80 7.08 -2.91 -0.02 3.78 16 39 H 0.15 2.83 5.87 -2.91 -0.02 2.82 16 Total: -1.00 -72.26 320.49 4.46 -67.80 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: -0.72 Total: 28.93 kcal Atomic # 6 Polarization: -53.57 SS G_CDS: 3.76 Total: -49.81 kcal Atomic # 7 Polarization: -90.87 SS G_CDS: -0.61 Total: -91.48 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -72.26 4.46 -67.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072220381.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.438 kcal (2) G-P(sol) polarization free energy of solvation -72.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds