Wall clock time and date at job start Mon Mar 30 2020 01:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46987 * 2 1 4 4 N 1.46893 * 109.47407 * 239.99804 * 2 1 3 5 5 C 1.46898 * 110.99978 * 85.50954 * 4 2 1 6 6 C 1.53006 * 109.47110 * 184.04580 * 5 4 2 7 7 C 1.50694 * 115.55221 * 272.32879 * 6 5 4 8 8 H 1.08004 * 119.99631 * 114.86269 * 7 6 5 9 9 C 1.37877 * 120.00084 * 294.86639 * 7 6 5 10 10 N 1.31503 * 120.00046 * 356.16831 * 9 7 6 11 11 Si 1.86803 * 119.99651 * 176.16819 * 9 7 6 12 12 H 1.48503 * 109.46982 * 60.00359 * 11 9 7 13 13 H 1.48507 * 109.46985 * 179.97438 * 11 9 7 14 14 H 1.48488 * 109.47541 * 299.99899 * 11 9 7 15 15 C 1.53005 * 117.49501 * 126.62197 * 6 5 4 16 16 C 1.52994 * 117.49460 * 58.00480 * 6 5 4 17 17 C 1.50700 * 109.46653 * 119.99771 * 2 1 3 18 18 C 1.38362 * 119.84978 * 73.74106 * 17 2 1 19 19 C 1.37948 * 120.15311 * 179.76361 * 18 17 2 20 20 C 1.39625 * 119.84495 * 0.48290 * 19 18 17 21 21 C 1.43201 * 120.14888 * 179.74717 * 20 19 18 22 22 N 6.84443 * 109.45892 * 119.99545 * 2 1 3 23 23 C 1.39634 * 119.70419 * 359.76896 * 20 19 18 24 24 C 1.37949 * 119.84119 * 0.02562 * 23 20 19 25 25 H 1.09000 * 109.46679 * 60.00420 * 1 2 3 26 26 H 1.09002 * 109.46987 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46860 * 300.00170 * 1 2 3 28 28 H 1.00896 * 111.00187 * 209.46893 * 4 2 1 29 29 H 1.09005 * 109.46619 * 64.05373 * 5 4 2 30 30 H 1.08997 * 109.47704 * 304.05258 * 5 4 2 31 31 H 0.97003 * 120.00419 * 185.03296 * 10 9 7 32 32 H 1.09003 * 117.49608 * 0.02562 * 15 6 5 33 33 H 1.08997 * 117.49831 * 145.02266 * 15 6 5 34 34 H 1.08999 * 117.50049 * 214.97708 * 16 6 5 35 35 H 1.09008 * 117.50279 * 359.97190 * 16 6 5 36 36 H 1.08001 * 119.92102 * 359.97438 * 18 17 2 37 37 H 1.08001 * 120.07614 * 180.25615 * 19 18 17 38 38 H 1.07997 * 120.08216 * 179.97438 * 23 20 19 39 39 H 1.07996 * 119.92751 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6925 -1.1993 5 6 2.0941 0.2255 -2.3438 6 6 2.5101 -0.5514 -3.5946 7 6 3.9952 -0.6823 -3.8144 8 1 4.4634 -1.6547 -3.7736 9 6 4.7561 0.4392 -4.0676 10 7 4.1762 1.6129 -4.1920 11 14 6.6108 0.2914 -4.2338 12 1 6.9358 -0.6236 -5.3573 13 1 7.1920 1.6312 -4.5034 14 1 7.1792 -0.2507 -2.9736 15 6 1.6205 -0.4252 -4.8330 16 6 1.6262 -1.7239 -4.0243 17 6 2.0323 -0.7104 1.2305 18 6 1.9450 -2.0887 1.3138 19 6 2.4073 -2.7458 2.4352 20 6 2.9549 -2.0158 3.4920 21 6 3.4318 -2.6908 4.6614 22 7 3.8102 -3.2263 5.5891 23 6 3.0352 -0.6246 3.4035 24 6 2.5730 0.0193 2.2745 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.9135 -1.1276 -1.0261 29 1 2.8292 1.0036 -2.1382 30 1 1.1179 0.6819 -2.5075 31 1 4.7012 2.3893 -4.4420 32 1 0.7392 0.2117 -4.7568 33 1 2.1094 -0.4366 -5.8071 34 1 2.1188 -2.5899 -4.4665 35 1 0.7485 -1.9422 -3.4158 36 1 1.5171 -2.6517 0.4975 37 1 2.3423 -3.8221 2.4972 38 1 3.4573 -0.0539 4.2175 39 1 2.6340 1.0952 2.2048 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088249645.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:46 Heat of formation + Delta-G solvation = 71.800938 kcal Electronic energy + Delta-G solvation = -19671.938211 eV Core-core repulsion = 16772.919583 eV Total energy + Delta-G solvation = -2899.018627 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.77554 -37.33750 -36.54135 -35.11586 -32.02079 -31.35734 -31.09891 -29.06292 -25.78688 -24.98632 -23.59174 -22.75866 -21.07714 -20.25836 -19.05651 -18.97824 -16.43166 -15.84883 -15.59861 -14.73274 -14.64167 -14.35760 -14.20412 -13.89128 -13.74463 -13.53320 -13.40350 -12.86877 -12.76712 -12.39186 -12.12600 -11.93496 -11.78030 -11.33490 -11.31536 -11.06264 -10.96804 -10.88976 -10.56582 -10.45405 -10.12564 -9.39607 -9.10216 -8.82412 -8.78575 -8.50640 -8.10508 -7.62264 -6.06075 -4.11670 0.67306 1.27375 2.53209 2.84899 3.27224 3.32673 3.35531 3.76332 3.79338 4.37135 4.57101 4.76964 4.79020 4.90118 5.19589 5.29996 5.38510 5.51674 5.55116 5.67082 5.71138 5.90255 5.97834 6.08183 6.17888 6.19983 6.23573 6.40780 6.51720 6.56039 6.58767 6.75224 6.86881 6.91183 6.93450 7.14429 7.34551 7.49612 7.56390 7.85856 7.89202 8.15408 8.47064 8.90490 9.53060 11.01443 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.017686 B = 0.004699 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.813036 B = 5957.413448 C = 6751.941778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.114 3.886 3 H 0.050 0.950 4 N -0.677 5.677 5 C 0.106 3.894 6 C 0.054 3.946 7 C -0.495 4.495 8 H 0.058 0.942 9 C 0.071 3.929 10 N -0.881 5.881 11 Si 0.887 3.113 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.276 1.276 15 C -0.180 4.180 16 C -0.192 4.192 17 C -0.046 4.046 18 C -0.098 4.098 19 C -0.071 4.071 20 C -0.043 4.043 21 C 0.261 3.739 22 N -0.431 5.431 23 C -0.071 4.071 24 C -0.117 4.117 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.345 0.655 29 H 0.048 0.952 30 H 0.041 0.959 31 H 0.260 0.740 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.144 0.856 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.089 -2.147 10.711 12.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.004 3.996 3 H 0.068 0.932 4 N -0.309 5.309 5 C -0.022 4.022 6 C 0.053 3.947 7 C -0.532 4.532 8 H 0.076 0.924 9 C -0.132 4.132 10 N -0.518 5.518 11 Si 0.714 3.286 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.202 1.202 15 C -0.218 4.218 16 C -0.229 4.229 17 C -0.047 4.047 18 C -0.116 4.116 19 C -0.091 4.091 20 C -0.047 4.047 21 C -0.054 4.054 22 N -0.106 5.106 23 C -0.092 4.092 24 C -0.135 4.135 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.163 0.837 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.162 0.838 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.065 -2.987 11.999 13.773 hybrid contribution 1.714 0.833 -0.401 1.948 sum -4.350 -2.154 11.599 12.573 Atomic orbital electron populations 1.21772 0.93970 1.02277 1.01030 1.20545 0.95890 0.95652 0.87517 0.93188 1.60727 1.34231 1.32984 1.02916 1.21501 0.98066 0.93340 0.89291 1.18742 0.91580 0.94345 0.90049 1.20536 0.90389 0.93014 1.49298 0.92379 1.24965 0.98071 0.95284 0.94888 1.69950 1.35796 0.99328 1.46677 0.86750 0.85953 0.77139 0.78716 1.20274 1.21349 1.20199 1.22735 1.01753 0.99332 0.97984 1.22712 1.02735 0.92316 1.05130 1.20424 0.94737 0.94171 0.95349 1.21096 0.98930 0.94040 0.97552 1.21198 0.95936 0.99971 0.92043 1.15999 1.05623 0.92790 0.90268 1.25821 0.93251 0.93322 0.92959 1.81234 1.09642 1.08620 1.11112 1.21084 0.97786 0.92100 0.98217 1.21050 0.99061 1.00455 0.92982 0.92195 0.92007 0.93176 0.83654 0.93392 0.94073 0.92984 0.92147 0.90724 0.91258 0.90967 0.83814 0.85146 0.85302 0.85071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 9.34 37.16 0.35 -1.28 16 2 C 0.11 1.56 2.81 -68.86 -0.19 1.36 16 3 H 0.05 0.73 7.63 -51.93 -0.40 0.33 16 4 N -0.68 -11.41 5.68 -107.95 -0.61 -12.02 16 5 C 0.11 2.21 5.28 -3.82 -0.02 2.19 16 6 C 0.05 1.24 1.53 -155.66 -0.24 1.00 16 7 C -0.49 -12.78 8.82 -34.44 -0.30 -13.08 16 8 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 9 C 0.07 1.85 5.26 -17.82 -0.09 1.76 16 10 N -0.88 -23.86 12.43 55.43 0.69 -23.17 16 11 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 15 C -0.18 -4.06 9.88 -26.73 -0.26 -4.33 16 16 C -0.19 -4.01 9.79 -26.74 -0.26 -4.27 16 17 C -0.05 -0.54 4.66 -104.53 -0.49 -1.02 16 18 C -0.10 -1.07 8.99 -39.64 -0.36 -1.43 16 19 C -0.07 -0.71 9.76 -39.17 -0.38 -1.09 16 20 C -0.04 -0.45 5.73 -106.93 -0.61 -1.06 16 21 C 0.26 3.09 15.33 -22.47 -0.34 2.75 16 22 N -0.43 -5.98 18.54 41.84 0.78 -5.21 16 23 C -0.07 -0.69 9.76 -39.17 -0.38 -1.07 16 24 C -0.12 -1.22 9.65 -39.64 -0.38 -1.60 16 25 H 0.06 0.80 7.43 -51.93 -0.39 0.41 16 26 H 0.06 0.74 8.06 -51.93 -0.42 0.32 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.34 6.13 8.18 -39.29 -0.32 5.81 16 29 H 0.05 1.14 7.13 -51.93 -0.37 0.77 16 30 H 0.04 0.84 7.13 -51.93 -0.37 0.47 16 31 H 0.26 6.82 8.32 -40.82 -0.34 6.49 16 32 H 0.06 1.29 8.04 -51.93 -0.42 0.87 16 33 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 34 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.07 1.40 8.14 -51.92 -0.42 0.98 16 36 H 0.14 1.58 7.90 -52.49 -0.41 1.16 16 37 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 39 H 0.13 1.20 7.99 -52.49 -0.42 0.78 16 LS Contribution 338.41 15.07 5.10 5.10 Total: -1.00 -27.35 338.41 -8.64 -35.99 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -5.60 Total: 5.11 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -3.98 Total: -21.17 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.85 Total: -40.40 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.35 -8.64 -35.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249645.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.791 kcal (2) G-P(sol) polarization free energy of solvation -27.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds