Wall clock time and date at job start Mon Mar 30 2020 01:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47381 * 2 1 4 4 C 1.50703 * 109.47033 * 239.99454 * 2 1 3 5 5 H 1.08002 * 120.00356 * 335.06868 * 4 2 1 6 6 C 1.37879 * 119.99619 * 155.06978 * 4 2 1 7 7 N 1.31518 * 119.99711 * 185.05851 * 6 4 2 8 8 Si 1.86804 * 120.00177 * 5.05614 * 6 4 2 9 9 H 1.48503 * 109.46738 * 84.80603 * 8 6 4 10 10 H 1.48501 * 109.47014 * 204.80154 * 8 6 4 11 11 H 1.48496 * 109.46903 * 324.80452 * 8 6 4 12 12 N 1.46898 * 109.46873 * 119.99971 * 2 1 3 13 13 C 1.46897 * 111.00679 * 58.95471 * 12 2 1 14 14 C 1.46901 * 110.99924 * 294.99481 * 12 2 1 15 15 C 1.50697 * 109.47226 * 190.00005 * 14 12 2 16 16 C 1.36609 * 120.92604 * 259.72238 * 15 14 12 17 17 C 1.39291 * 119.93734 * 179.81990 * 16 15 14 18 18 N 1.31112 * 121.74715 * 0.44889 * 17 16 15 19 19 C 1.33647 * 121.32256 * 359.78832 * 18 17 16 20 20 C 1.40600 * 121.08194 * 179.97438 * 19 18 17 21 21 C 1.36074 * 119.74808 * 180.02562 * 20 19 18 22 22 C 1.39364 * 121.07203 * 0.02562 * 21 20 19 23 23 C 1.36136 * 120.87251 * 0.02562 * 22 21 20 24 24 C 1.40435 * 119.61215 * 359.94513 * 23 22 21 25 25 H 1.09000 * 109.46945 * 54.89242 * 1 2 3 26 26 H 1.08997 * 109.47370 * 294.88969 * 1 2 3 27 27 H 1.09003 * 109.47245 * 174.88502 * 1 2 3 28 28 H 0.97004 * 119.99972 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.47166 * 59.99135 * 13 12 2 30 30 H 1.08995 * 109.47818 * 180.02562 * 13 12 2 31 31 H 1.09007 * 109.46751 * 300.00370 * 13 12 2 32 32 H 1.08997 * 109.47681 * 310.00371 * 14 12 2 33 33 H 1.09001 * 109.46621 * 70.00637 * 14 12 2 34 34 H 1.07999 * 120.03711 * 0.02562 * 16 15 14 35 35 H 1.07997 * 119.13071 * 180.24264 * 17 16 15 36 36 H 1.07999 * 120.12477 * 0.02562 * 20 19 18 37 37 H 1.08005 * 119.46539 * 179.97438 * 21 20 19 38 38 H 1.08004 * 119.56307 * 179.97438 * 22 21 20 39 39 H 1.07999 * 120.19159 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 1.4127 -1.4480 -1.7190 6 6 3.2830 -0.4192 -1.7324 7 7 3.6821 -0.9645 -2.8607 8 14 4.4105 0.7501 -0.8099 9 1 5.1556 -0.0002 0.2327 10 1 5.3723 1.3636 -1.7607 11 1 3.6000 1.8164 -0.1685 12 7 2.0196 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2461 14 6 1.6487 0.0393 2.4180 15 6 2.3678 -0.5570 3.6005 16 6 1.7320 -1.4215 4.4459 17 6 2.4176 -1.9635 5.5306 18 7 3.6694 -1.6608 5.7765 19 6 4.3476 -0.8182 4.9915 20 6 5.6897 -0.4967 5.2603 21 6 6.3543 0.3650 4.4433 22 6 5.7262 0.9385 3.3393 23 6 4.4276 0.6522 3.0475 24 6 3.7109 -0.2334 3.8686 25 1 -0.3633 0.5910 -0.8407 26 1 -0.3634 0.4325 0.9322 27 1 -0.3634 -1.0236 -0.0916 28 1 4.5618 -0.7592 -3.2140 29 1 1.8761 -2.6151 0.3648 30 1 1.9052 -2.5655 2.1441 31 1 0.4384 -2.0742 1.2640 32 1 1.9297 1.0871 2.3125 33 1 0.5722 -0.0345 2.5725 34 1 0.6999 -1.6872 4.2716 35 1 1.9036 -2.6486 6.1883 36 1 6.1913 -0.9320 6.1120 37 1 7.3850 0.6091 4.6543 38 1 6.2767 1.6197 2.7073 39 1 3.9518 1.1026 2.1890 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092347706.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:46 Heat of formation + Delta-G solvation = 61.751201 kcal Electronic energy + Delta-G solvation = -20879.216650 eV Core-core repulsion = 17979.762233 eV Total energy + Delta-G solvation = -2899.454416 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.74493 -37.61628 -36.81826 -33.93209 -32.21854 -30.39041 -30.23763 -29.25888 -27.07884 -25.56900 -24.28243 -23.33892 -23.02597 -20.65330 -19.10080 -17.94844 -17.25194 -16.91398 -16.14136 -15.25611 -14.69523 -14.54688 -14.03033 -14.01308 -13.88854 -13.62185 -13.36948 -13.01213 -12.68544 -12.55417 -11.89103 -11.65311 -11.56855 -11.43099 -11.33175 -11.09066 -10.92115 -10.79005 -10.55603 -10.08535 -9.90493 -9.69922 -9.31943 -9.06740 -8.64319 -8.59746 -8.01828 -7.33781 -6.12015 -4.15949 0.58522 1.00414 2.19208 3.10391 3.32743 3.40711 3.46277 4.26585 4.42798 4.45215 4.69077 4.77567 4.92048 5.04140 5.07903 5.31426 5.32457 5.46655 5.49170 5.64299 5.69306 5.88806 5.99084 6.06164 6.18139 6.20583 6.21207 6.22753 6.28071 6.29420 6.46173 6.52960 6.68496 6.73055 6.80207 6.94644 7.03211 7.08987 7.56097 7.95700 8.06037 8.14457 8.50717 8.90626 9.52060 10.98998 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.018387 B = 0.007816 C = 0.006050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.426957 B = 3581.410426 C = 4626.688026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.165 3.835 3 H 0.051 0.949 4 C -0.501 4.501 5 H 0.072 0.928 6 C 0.082 3.918 7 N -0.895 5.895 8 Si 0.890 3.110 9 H -0.263 1.263 10 H -0.300 1.300 11 H -0.269 1.269 12 N -0.527 5.527 13 C 0.037 3.963 14 C 0.074 3.926 15 C 0.007 3.993 16 C -0.186 4.186 17 C 0.133 3.867 18 N -0.487 5.487 19 C 0.127 3.873 20 C -0.106 4.106 21 C -0.096 4.096 22 C -0.132 4.132 23 C -0.070 4.070 24 C -0.088 4.088 25 H 0.052 0.948 26 H 0.028 0.972 27 H 0.048 0.952 28 H 0.264 0.736 29 H 0.081 0.919 30 H 0.042 0.958 31 H 0.015 0.985 32 H 0.077 0.923 33 H 0.043 0.957 34 H 0.132 0.868 35 H 0.154 0.846 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.509 2.623 15.033 15.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.061 3.939 3 H 0.069 0.931 4 C -0.539 4.539 5 H 0.090 0.910 6 C -0.122 4.122 7 N -0.532 5.532 8 Si 0.719 3.281 9 H -0.188 1.188 10 H -0.228 1.228 11 H -0.195 1.195 12 N -0.252 5.252 13 C -0.111 4.111 14 C -0.054 4.054 15 C -0.002 4.002 16 C -0.207 4.207 17 C -0.039 4.039 18 N -0.196 5.196 19 C 0.006 3.994 20 C -0.125 4.125 21 C -0.116 4.116 22 C -0.150 4.150 23 C -0.088 4.088 24 C -0.090 4.090 25 H 0.071 0.929 26 H 0.047 0.953 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.033 0.967 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.150 0.850 35 H 0.172 0.828 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.678 2.285 15.561 15.743 hybrid contribution -0.673 0.796 -0.369 1.106 sum 0.006 3.081 15.192 15.501 Atomic orbital electron populations 1.22320 1.00044 1.00900 0.99192 1.20016 0.90063 0.95609 0.88247 0.93117 1.20823 1.01850 1.24266 1.07004 0.91014 1.25049 0.97651 0.95537 0.93952 1.69928 1.19926 1.44111 1.19266 0.86695 0.80440 0.81228 0.79752 1.18787 1.22771 1.19489 1.63078 1.59657 1.02299 1.00204 1.22158 0.96366 0.90823 1.01796 1.21203 0.96338 0.98396 0.89435 1.20318 0.92532 0.93127 0.94174 1.21724 1.01801 1.00077 0.97117 1.22816 0.90216 0.96110 0.94734 1.67989 1.08666 1.13810 1.29122 1.18862 0.94545 0.94353 0.91656 1.20677 0.92328 0.98950 1.00520 1.20860 0.99855 0.96362 0.94535 1.20915 0.95275 1.01062 0.97783 1.21199 0.94519 0.95515 0.97612 1.18689 0.94469 0.99287 0.96562 0.92908 0.95320 0.93264 0.92596 0.90071 0.93910 0.96659 0.90452 0.93855 0.84997 0.82835 0.85155 0.85632 0.85872 0.84953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 8.43 37.16 0.31 -2.85 16 2 C 0.17 3.65 1.71 -68.87 -0.12 3.53 16 3 H 0.05 1.16 5.63 -51.93 -0.29 0.87 16 4 C -0.50 -13.37 7.71 -34.44 -0.27 -13.64 16 5 H 0.07 2.09 8.05 -52.49 -0.42 1.67 16 6 C 0.08 2.30 5.47 -17.82 -0.10 2.21 16 7 N -0.90 -26.76 13.96 55.43 0.77 -25.99 16 8 Si 0.89 21.57 26.13 -169.99 -4.44 17.13 16 9 H -0.26 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 11 H -0.27 -6.11 6.14 56.52 0.35 -5.76 16 12 N -0.53 -10.68 4.28 -237.74 -1.02 -11.70 16 13 C 0.04 0.71 8.68 60.06 0.52 1.23 16 14 C 0.07 1.25 3.87 -4.98 -0.02 1.23 16 15 C 0.01 0.12 4.61 -104.27 -0.48 -0.36 16 16 C -0.19 -2.60 8.68 -39.78 -0.35 -2.95 16 17 C 0.13 1.81 11.14 -17.47 -0.19 1.61 16 18 N -0.49 -7.75 10.34 -10.98 -0.11 -7.86 16 19 C 0.13 2.11 6.60 -84.86 -0.56 1.55 16 20 C -0.11 -1.53 9.98 -39.47 -0.39 -1.92 16 21 C -0.10 -1.28 9.94 -39.94 -0.40 -1.68 16 22 C -0.13 -2.00 9.95 -39.92 -0.40 -2.39 16 23 C -0.07 -1.21 9.32 -39.51 -0.37 -1.58 16 24 C -0.09 -1.53 5.74 -106.80 -0.61 -2.14 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.03 0.47 6.51 -51.93 -0.34 0.13 16 27 H 0.05 0.94 6.68 -51.93 -0.35 0.59 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.08 1.78 7.12 -51.93 -0.37 1.41 16 30 H 0.04 0.76 6.45 -51.93 -0.33 0.43 16 31 H 0.01 0.27 6.40 -51.92 -0.33 -0.06 16 32 H 0.08 1.30 6.93 -51.93 -0.36 0.94 16 33 H 0.04 0.67 6.71 -51.93 -0.35 0.32 16 34 H 0.13 1.53 8.05 -52.49 -0.42 1.11 16 35 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 38 H 0.12 1.62 8.06 -52.48 -0.42 1.19 16 39 H 0.13 2.44 5.49 -52.49 -0.29 2.15 16 LS Contribution 309.62 15.07 4.67 4.67 Total: -1.00 -30.30 309.62 -8.71 -39.01 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -5.16 Total: 2.91 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -3.42 Total: -18.16 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: -0.36 Total: -45.55 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.44 Total: 17.13 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.30 -8.71 -39.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092347706.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.764 kcal (2) G-P(sol) polarization free energy of solvation -30.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds