Wall clock time and date at job start Mon Mar 30 2020 01:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47381 * 2 1 4 4 C 1.50703 * 109.47033 * 239.99454 * 2 1 3 5 5 H 1.08002 * 120.00356 * 335.06868 * 4 2 1 6 6 C 1.37879 * 119.99619 * 155.06978 * 4 2 1 7 7 N 1.31518 * 119.99711 * 185.05851 * 6 4 2 8 8 Si 1.86804 * 120.00177 * 5.05614 * 6 4 2 9 9 H 1.48503 * 109.46738 * 84.80603 * 8 6 4 10 10 H 1.48501 * 109.47014 * 204.80154 * 8 6 4 11 11 H 1.48496 * 109.46903 * 324.80452 * 8 6 4 12 12 N 1.46898 * 109.46873 * 119.99971 * 2 1 3 13 13 C 1.46897 * 111.00679 * 58.95471 * 12 2 1 14 14 C 1.46901 * 110.99924 * 294.99481 * 12 2 1 15 15 C 1.50697 * 109.47226 * 190.00005 * 14 12 2 16 16 C 1.36609 * 120.92604 * 259.72238 * 15 14 12 17 17 C 1.39291 * 119.93734 * 179.81990 * 16 15 14 18 18 N 1.31112 * 121.74715 * 0.44889 * 17 16 15 19 19 C 1.33647 * 121.32256 * 359.78832 * 18 17 16 20 20 C 1.40600 * 121.08194 * 179.97438 * 19 18 17 21 21 C 1.36074 * 119.74808 * 180.02562 * 20 19 18 22 22 C 1.39364 * 121.07203 * 0.02562 * 21 20 19 23 23 C 1.36136 * 120.87251 * 0.02562 * 22 21 20 24 24 C 1.40435 * 119.61215 * 359.94513 * 23 22 21 25 25 H 1.09000 * 109.46945 * 54.89242 * 1 2 3 26 26 H 1.08997 * 109.47370 * 294.88969 * 1 2 3 27 27 H 1.09003 * 109.47245 * 174.88502 * 1 2 3 28 28 H 0.97004 * 119.99972 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.47166 * 59.99135 * 13 12 2 30 30 H 1.08995 * 109.47818 * 180.02562 * 13 12 2 31 31 H 1.09007 * 109.46751 * 300.00370 * 13 12 2 32 32 H 1.08997 * 109.47681 * 310.00371 * 14 12 2 33 33 H 1.09001 * 109.46621 * 70.00637 * 14 12 2 34 34 H 1.07999 * 120.03711 * 0.02562 * 16 15 14 35 35 H 1.07997 * 119.13071 * 180.24264 * 17 16 15 36 36 H 1.07999 * 120.12477 * 0.02562 * 20 19 18 37 37 H 1.08005 * 119.46539 * 179.97438 * 21 20 19 38 38 H 1.08004 * 119.56307 * 179.97438 * 22 21 20 39 39 H 1.07999 * 120.19159 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 1.4127 -1.4480 -1.7190 6 6 3.2830 -0.4192 -1.7324 7 7 3.6821 -0.9645 -2.8607 8 14 4.4105 0.7501 -0.8099 9 1 5.1556 -0.0002 0.2327 10 1 5.3723 1.3636 -1.7607 11 1 3.6000 1.8164 -0.1685 12 7 2.0196 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2461 14 6 1.6487 0.0393 2.4180 15 6 2.3678 -0.5570 3.6005 16 6 1.7320 -1.4215 4.4459 17 6 2.4176 -1.9635 5.5306 18 7 3.6694 -1.6608 5.7765 19 6 4.3476 -0.8182 4.9915 20 6 5.6897 -0.4967 5.2603 21 6 6.3543 0.3650 4.4433 22 6 5.7262 0.9385 3.3393 23 6 4.4276 0.6522 3.0475 24 6 3.7109 -0.2334 3.8686 25 1 -0.3633 0.5910 -0.8407 26 1 -0.3634 0.4325 0.9322 27 1 -0.3634 -1.0236 -0.0916 28 1 4.5618 -0.7592 -3.2140 29 1 1.8761 -2.6151 0.3648 30 1 1.9052 -2.5655 2.1441 31 1 0.4384 -2.0742 1.2640 32 1 1.9297 1.0871 2.3125 33 1 0.5722 -0.0345 2.5725 34 1 0.6999 -1.6872 4.2716 35 1 1.9036 -2.6486 6.1883 36 1 6.1913 -0.9320 6.1120 37 1 7.3850 0.6091 4.6543 38 1 6.2767 1.6197 2.7073 39 1 3.9518 1.1026 2.1890 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092347706.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:46 Heat of formation + Delta-G solvation = 42.541537 kcal Electronic energy + Delta-G solvation = -20880.049643 eV Core-core repulsion = 17979.762233 eV Total energy + Delta-G solvation = -2900.287410 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.87716 -39.14009 -37.94123 -35.35956 -34.12147 -31.62036 -31.47322 -30.66894 -28.49056 -27.42936 -25.67790 -24.45694 -24.32697 -21.99770 -20.74624 -19.14281 -18.85803 -18.33724 -17.33879 -16.80079 -16.32198 -15.79116 -15.39162 -15.27236 -15.24531 -14.96289 -14.69035 -14.66770 -14.22028 -13.92316 -13.37115 -13.19744 -12.85984 -12.78816 -12.65686 -12.59091 -12.43062 -12.23766 -12.11321 -11.77655 -11.60031 -11.30186 -10.98460 -10.76170 -10.43430 -9.69571 -9.19855 -8.86125 -8.27223 -6.33789 -0.54511 -0.09997 1.02532 1.35779 1.46561 1.50906 2.02285 2.41374 2.92759 3.18257 3.39982 3.57355 3.61291 3.82123 3.89141 3.99987 4.23898 4.26385 4.40174 4.42980 4.44845 4.52404 4.60994 4.66747 4.71800 4.78517 4.81194 4.91035 5.07682 5.10919 5.15314 5.17548 5.32722 5.42678 5.43025 5.55748 5.62833 5.67011 5.94934 6.11777 6.47074 6.59233 6.80750 6.95427 7.37491 8.87397 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.018387 B = 0.007816 C = 0.006050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.426957 B = 3581.410426 C = 4626.688026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.170 3.830 3 H 0.047 0.953 4 C -0.496 4.496 5 H 0.032 0.968 6 C 0.024 3.976 7 N -0.947 5.947 8 Si 0.950 3.050 9 H -0.264 1.264 10 H -0.305 1.305 11 H -0.246 1.246 12 N -0.544 5.544 13 C 0.047 3.953 14 C 0.082 3.918 15 C -0.016 4.016 16 C -0.174 4.174 17 C 0.133 3.867 18 N -0.502 5.502 19 C 0.104 3.896 20 C -0.111 4.111 21 C -0.092 4.092 22 C -0.135 4.135 23 C -0.100 4.100 24 C -0.107 4.107 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.045 0.955 28 H 0.263 0.737 29 H 0.043 0.957 30 H 0.057 0.943 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.160 0.840 35 H 0.193 0.807 36 H 0.150 0.850 37 H 0.162 0.838 38 H 0.139 0.861 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.816 3.212 18.094 18.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.064 3.936 3 H 0.065 0.935 4 C -0.534 4.534 5 H 0.050 0.950 6 C -0.174 4.174 7 N -0.588 5.588 8 Si 0.776 3.224 9 H -0.189 1.189 10 H -0.233 1.233 11 H -0.170 1.170 12 N -0.269 5.269 13 C -0.101 4.101 14 C -0.045 4.045 15 C -0.025 4.025 16 C -0.195 4.195 17 C -0.039 4.039 18 N -0.211 5.211 19 C -0.017 4.017 20 C -0.130 4.130 21 C -0.112 4.112 22 C -0.153 4.153 23 C -0.119 4.119 24 C -0.110 4.110 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.178 0.822 35 H 0.210 0.790 36 H 0.167 0.833 37 H 0.180 0.820 38 H 0.157 0.843 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.351 2.882 18.645 18.870 hybrid contribution -0.651 0.533 -1.229 1.490 sum -0.300 3.416 17.416 17.750 Atomic orbital electron populations 1.22204 0.97672 1.00999 1.00864 1.19809 0.91915 0.94569 0.87290 0.93545 1.21061 1.00981 1.22841 1.08535 0.94956 1.25845 0.99393 0.97517 0.94663 1.70072 1.20504 1.46766 1.21419 0.85752 0.78589 0.79862 0.78194 1.18930 1.23282 1.16977 1.62645 1.60476 1.02740 1.01016 1.22024 0.97383 0.90083 1.00638 1.21138 0.97600 0.97847 0.87954 1.20323 0.92610 0.94714 0.94862 1.22053 1.02901 0.98330 0.96192 1.23474 0.89624 0.95888 0.94894 1.68054 1.09772 1.13986 1.29299 1.19205 0.95635 0.94971 0.91880 1.21014 0.91810 0.98948 1.01214 1.21213 1.01337 0.95288 0.93335 1.21254 0.94739 1.00915 0.98391 1.21200 0.95736 0.96992 0.97967 1.18884 0.95191 0.99781 0.97108 0.93163 0.92044 0.93615 0.92823 0.93834 0.92431 0.94809 0.90595 0.91702 0.82238 0.79023 0.83277 0.82027 0.84278 0.86609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.78 8.43 71.98 0.61 -5.17 16 2 C 0.17 7.39 1.71 44.17 0.08 7.47 16 3 H 0.05 2.07 5.63 -2.39 -0.01 2.06 16 4 C -0.50 -27.19 7.71 25.60 0.20 -26.99 16 5 H 0.03 1.98 8.05 -2.91 -0.02 1.95 16 6 C 0.02 1.41 5.47 84.65 0.46 1.87 16 7 N -0.95 -59.02 13.96 21.45 0.30 -58.72 16 8 Si 0.95 45.38 26.13 68.60 1.79 47.17 16 9 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16 10 H -0.31 -14.67 7.11 99.48 0.71 -13.96 16 11 H -0.25 -10.63 6.14 99.48 0.61 -10.01 16 12 N -0.54 -21.36 4.28 -906.06 -3.87 -25.23 16 13 C 0.05 1.75 8.68 127.69 1.11 2.86 16 14 C 0.08 2.57 3.87 85.56 0.33 2.91 16 15 C -0.02 -0.50 4.61 -19.64 -0.09 -0.59 16 16 C -0.17 -4.26 8.68 22.14 0.19 -4.07 16 17 C 0.13 3.15 11.14 85.05 0.95 4.10 16 18 N -0.50 -14.71 10.34 -188.65 -1.95 -16.66 16 19 C 0.10 3.26 6.60 40.30 0.27 3.52 16 20 C -0.11 -2.96 9.98 22.34 0.22 -2.73 16 21 C -0.09 -2.21 9.94 22.04 0.22 -2.00 16 22 C -0.14 -3.83 9.95 22.05 0.22 -3.61 16 23 C -0.10 -3.37 9.32 22.32 0.21 -3.16 16 24 C -0.11 -3.57 5.74 -21.28 -0.12 -3.70 16 25 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.06 1.84 6.51 -2.39 -0.02 1.82 16 27 H 0.04 1.68 6.68 -2.39 -0.02 1.67 16 28 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 29 H 0.04 1.94 7.12 -2.39 -0.02 1.92 16 30 H 0.06 1.96 6.45 -2.39 -0.02 1.94 16 31 H 0.03 1.12 6.40 -2.38 -0.02 1.11 16 32 H 0.08 2.41 6.93 -2.39 -0.02 2.39 16 33 H 0.07 1.75 6.71 -2.39 -0.02 1.74 16 34 H 0.16 2.94 8.05 -2.91 -0.02 2.92 16 35 H 0.19 2.90 8.06 -2.91 -0.02 2.88 16 36 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 37 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 38 H 0.14 3.36 8.06 -2.91 -0.02 3.33 16 39 H 0.12 4.18 5.49 -2.91 -0.02 4.17 16 Total: -1.00 -68.38 309.62 2.07 -66.31 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.95 Total: 16.44 kcal Atomic # 6 Polarization: -34.16 SS G_CDS: 4.85 Total: -29.31 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -5.53 Total: -100.61 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.79 Total: 47.17 kcal Total: -68.38 2.07 -66.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092347706.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.855 kcal (2) G-P(sol) polarization free energy of solvation -68.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds