Wall clock time and date at job start Mon Mar 30 2020 01:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99842 * 2 1 4 4 H 1.48498 * 109.46606 * 240.00179 * 3 2 1 5 5 H 1.48503 * 109.47066 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47090 * 120.00033 * 3 2 1 7 7 C 1.38811 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99475 * 197.34669 * 7 2 1 9 9 N 1.36939 * 120.00065 * 17.35084 * 7 2 1 10 10 C 1.46921 * 120.62477 * 207.67595 * 9 7 2 11 11 C 1.53196 * 108.77319 * 233.62800 * 10 9 7 12 12 C 1.53044 * 109.31289 * 305.37019 * 11 10 9 13 13 N 1.46902 * 109.45685 * 181.38437 * 12 11 10 14 14 C 1.46907 * 110.99717 * 155.00038 * 13 12 11 15 15 C 1.52998 * 109.46841 * 179.97438 * 14 13 12 16 16 H 1.08994 * 109.46780 * 53.79642 * 15 14 13 17 17 C 1.54026 * 109.72495 * 174.08028 * 15 14 13 18 18 C 1.55134 * 106.98479 * 167.04450 * 17 15 14 19 19 S 1.83459 * 102.20247 * 317.93251 * 18 17 15 20 20 C 1.54273 * 109.60854 * 293.54326 * 15 14 13 21 21 C 1.53035 * 109.53804 * 61.36390 * 12 11 10 22 22 C 1.46925 * 120.63082 * 27.69957 * 9 7 2 23 23 H 0.97005 * 120.00069 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.58547 * 113.84842 * 10 9 7 25 25 H 1.08997 * 109.59614 * 353.41631 * 10 9 7 26 26 H 1.08995 * 109.50087 * 185.42138 * 11 10 9 27 27 H 1.09003 * 109.52392 * 65.33347 * 11 10 9 28 28 H 1.08996 * 109.46121 * 301.35735 * 12 11 10 29 29 H 1.00899 * 111.00224 * 278.94939 * 13 12 11 30 30 H 1.09001 * 109.47151 * 59.99698 * 14 13 12 31 31 H 1.08995 * 109.47244 * 300.00144 * 14 13 12 32 32 H 1.08996 * 109.89200 * 47.67531 * 17 15 14 33 33 H 1.08999 * 109.97284 * 286.45297 * 17 15 14 34 34 H 1.08998 * 110.85334 * 199.75640 * 18 17 15 35 35 H 1.08993 * 110.86117 * 76.11050 * 18 17 15 36 36 H 1.08999 * 110.40171 * 93.33670 * 20 15 14 37 37 H 1.09006 * 110.40512 * 331.03579 * 20 15 14 38 38 H 1.09003 * 109.49875 * 58.58674 * 21 12 11 39 39 H 1.09000 * 109.49908 * 178.68184 * 21 12 11 40 40 H 1.09003 * 109.58346 * 246.16019 * 22 9 7 41 41 H 1.09001 * 109.58438 * 6.57675 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0534 -1.2232 0.2794 9 7 1.3722 -2.3613 -0.3526 10 6 1.8195 -3.6546 0.1821 11 6 2.0751 -4.6100 -0.9878 12 6 0.8196 -4.6903 -1.8593 13 7 1.0499 -5.6312 -2.9637 14 6 -0.2179 -6.1902 -3.4520 15 6 0.0620 -7.1627 -4.5995 16 1 0.7885 -7.9077 -4.2752 17 6 -1.2444 -7.8635 -5.0173 18 6 -0.9677 -8.5679 -6.3716 19 16 0.0103 -7.3043 -7.2731 20 6 0.6208 -6.3874 -5.8105 21 6 0.5014 -3.3053 -2.4273 22 6 0.2279 -2.3352 -1.2738 23 1 -0.4850 0.8401 -0.0004 24 1 1.0470 -4.0688 0.8301 25 1 2.7400 -3.5170 0.7493 26 1 2.3144 -5.6011 -0.6026 27 1 2.9090 -4.2403 -1.5845 28 1 -0.0196 -5.0367 -1.2561 29 1 1.5632 -5.1911 -3.7126 30 1 -0.8577 -5.3829 -3.8082 31 1 -0.7181 -6.7191 -2.6408 32 1 -2.0388 -7.1268 -5.1362 33 1 -1.5286 -8.6001 -4.2658 34 1 -1.8995 -8.7832 -6.8945 35 1 -0.3850 -9.4771 -6.2242 36 1 1.7106 -6.3859 -5.7907 37 1 0.2402 -5.3660 -5.8164 38 1 1.3501 -2.9474 -3.0103 39 1 -0.3792 -3.3678 -3.0666 40 1 -0.6743 -2.6417 -0.7445 41 1 0.0984 -1.3269 -1.6671 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309598724.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:04 Heat of formation + Delta-G solvation = -12.057776 kcal Electronic energy + Delta-G solvation = -19050.741319 eV Core-core repulsion = 16283.530256 eV Total energy + Delta-G solvation = -2767.211063 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.85462 -38.19046 -35.93965 -33.83779 -31.73202 -31.43307 -29.95223 -27.53192 -26.22644 -24.05075 -23.71823 -22.75335 -21.31930 -20.70892 -18.80997 -17.62277 -17.13616 -16.87863 -16.04164 -15.83350 -15.40550 -15.28625 -15.22092 -14.77793 -14.57646 -14.19128 -13.96366 -13.56665 -13.31751 -13.18723 -12.97511 -12.87512 -12.56843 -12.54441 -12.21325 -12.15673 -12.05748 -11.98996 -11.81723 -11.68733 -11.38171 -11.17149 -10.81036 -10.56246 -9.31377 -8.73434 -8.69246 -7.88730 -5.33758 0.88208 1.44412 1.45732 1.48135 1.54884 2.50398 3.09050 3.27193 3.58584 3.68864 3.79710 3.90302 3.98997 4.14582 4.17439 4.29372 4.37534 4.44049 4.51319 4.61223 4.64421 4.69780 4.73914 4.81607 4.82467 4.88114 4.95239 5.04206 5.07493 5.22179 5.25703 5.28953 5.37781 5.49515 5.62764 5.70335 6.10831 6.37825 6.46699 7.13713 7.85693 8.36858 9.17226 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.034983 B = 0.003558 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.194319 B = 7868.256809 C = 8161.070614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.051 4.051 3 Si 0.967 3.033 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.274 1.274 7 C -0.265 4.265 8 H 0.066 0.934 9 N -0.611 5.611 10 C 0.140 3.860 11 C -0.104 4.104 12 C 0.107 3.893 13 N -0.680 5.680 14 C 0.071 3.929 15 C -0.083 4.083 16 H 0.094 0.906 17 C -0.120 4.120 18 C -0.055 4.055 19 S -0.361 6.361 20 C -0.058 4.058 21 C -0.151 4.151 22 C 0.181 3.819 23 H 0.250 0.750 24 H 0.014 0.986 25 H 0.054 0.946 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.340 0.660 30 H 0.028 0.972 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.050 0.950 39 H 0.059 0.941 40 H -0.005 1.005 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.640 -17.531 -10.397 20.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.794 3.206 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.396 4.396 8 H 0.084 0.916 9 N -0.335 5.335 10 C 0.014 3.986 11 C -0.144 4.144 12 C -0.003 4.003 13 N -0.310 5.310 14 C -0.060 4.060 15 C -0.103 4.103 16 H 0.113 0.887 17 C -0.159 4.159 18 C -0.202 4.202 19 S -0.135 6.135 20 C -0.206 4.206 21 C -0.192 4.192 22 C 0.055 3.945 23 H 0.059 0.941 24 H 0.032 0.968 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.158 0.842 30 H 0.046 0.954 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.125 0.875 34 H 0.132 0.868 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.102 0.898 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.013 0.987 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.415 -17.785 -11.151 21.039 hybrid contribution -0.325 1.993 0.793 2.169 sum -1.740 -15.792 -10.358 18.966 Atomic orbital electron populations 1.70183 1.06673 1.25889 1.55401 1.25788 0.96037 1.01499 1.01290 0.85355 0.77604 0.79230 0.78366 1.20501 1.21985 1.20008 1.19510 0.93036 0.86227 1.40792 0.91605 1.44332 1.35924 1.02335 1.50912 1.21087 0.97240 0.85836 0.94426 1.21806 0.96954 0.99013 0.96613 1.21276 0.97647 0.88986 0.92425 1.60717 1.20185 1.37785 1.12277 1.21985 0.90945 0.96333 0.96707 1.21985 0.98014 0.97278 0.93060 0.88733 1.22607 0.97111 1.00121 0.96032 1.24309 1.01703 0.97700 0.96510 1.87825 1.66868 1.39427 1.19392 1.24086 1.03840 1.00615 0.92027 1.22643 1.00322 0.97642 0.98585 1.20486 0.87744 0.97472 0.88843 0.94136 0.96820 0.92759 0.90177 0.93030 0.91567 0.84157 0.95396 0.90137 0.90519 0.87524 0.86770 0.87899 0.88316 0.89793 0.93160 0.92258 0.98719 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.81 11.19 21.65 0.24 -55.57 16 2 C -0.05 -2.87 4.91 84.86 0.42 -2.45 16 3 Si 0.97 45.16 29.59 68.60 2.03 47.19 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.27 -14.79 9.59 84.03 0.81 -13.98 16 8 H 0.07 3.57 7.89 -2.91 -0.02 3.55 16 9 N -0.61 -30.96 2.99 -699.10 -2.09 -33.05 16 10 C 0.14 5.79 6.52 86.36 0.56 6.35 16 11 C -0.10 -3.44 5.69 30.67 0.17 -3.27 16 12 C 0.11 3.29 2.43 44.94 0.11 3.40 16 13 N -0.68 -16.28 6.25 -491.43 -3.07 -19.35 16 14 C 0.07 1.40 4.85 86.30 0.42 1.81 16 15 C -0.08 -1.32 2.81 -10.02 -0.03 -1.35 16 16 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 17 C -0.12 -1.50 5.79 31.67 0.18 -1.32 16 18 C -0.05 -0.71 7.38 72.71 0.54 -0.18 16 19 S -0.36 -7.36 23.26 -56.49 -1.31 -8.68 16 20 C -0.06 -1.06 5.92 72.41 0.43 -0.64 16 21 C -0.15 -5.53 5.33 30.67 0.16 -5.36 16 22 C 0.18 8.76 5.31 86.36 0.46 9.22 16 23 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 24 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.05 2.21 7.93 -2.39 -0.02 2.19 16 26 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.07 2.12 7.80 -2.39 -0.02 2.10 16 29 H 0.34 7.99 7.63 -89.69 -0.68 7.31 16 30 H 0.03 0.60 7.28 -2.39 -0.02 0.59 16 31 H 0.08 1.54 8.05 -2.39 -0.02 1.52 16 32 H 0.08 1.05 8.11 -2.39 -0.02 1.03 16 33 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.08 1.67 7.80 -2.38 -0.02 1.66 16 38 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.06 1.97 7.42 -2.39 -0.02 1.95 16 40 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 41 H 0.05 2.78 6.03 -2.39 -0.01 2.77 16 Total: -1.00 -63.22 326.80 0.33 -62.89 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.30 Total: 14.32 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 4.23 Total: -7.76 kcal Atomic # 7 Polarization: -103.04 SS G_CDS: -4.92 Total: -107.97 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 16 Polarization: -7.36 SS G_CDS: -1.31 Total: -8.68 kcal Total: -63.22 0.33 -62.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309598724.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.833 kcal (2) G-P(sol) polarization free energy of solvation -63.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds