Wall clock time and date at job start Mon Mar 30 2020 01:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47308 * 2 1 4 4 C 1.50699 * 109.47572 * 120.00708 * 2 1 3 5 5 N 1.30507 * 125.64551 * 299.68770 * 4 2 1 6 6 C 1.34129 * 109.25484 * 180.26726 * 5 4 2 7 7 C 1.34671 * 108.02117 * 359.97438 * 6 5 4 8 8 N 1.35039 * 125.65284 * 119.99905 * 4 2 1 9 9 C 1.46498 * 126.39707 * 359.75348 * 8 4 2 10 10 C 1.50702 * 109.47163 * 85.00231 * 9 8 4 11 11 C 1.38644 * 119.74821 * 269.73026 * 10 9 8 12 12 C 1.37619 * 120.24673 * 179.72087 * 11 10 9 13 13 C 1.40718 * 119.74226 * 0.56953 * 12 11 10 14 14 C 1.41391 * 120.24122 * 179.68268 * 13 12 11 15 15 H 1.08005 * 120.00070 * 155.31042 * 14 13 12 16 16 C 1.39946 * 120.00107 * 335.31169 * 14 13 12 17 17 N 1.30824 * 119.99732 * 342.22774 * 16 14 13 18 18 Si 1.86803 * 120.00062 * 162.23534 * 16 14 13 19 19 H 1.48499 * 109.47409 * 94.66377 * 18 16 14 20 20 H 1.48508 * 109.46688 * 214.66321 * 18 16 14 21 21 H 1.48498 * 109.47081 * 334.65650 * 18 16 14 22 22 C 1.40717 * 119.51304 * 359.70292 * 13 12 11 23 23 C 1.37610 * 119.74517 * 359.97438 * 22 13 12 24 24 H 1.08998 * 109.46433 * 299.99346 * 1 2 3 25 25 H 1.08993 * 109.47272 * 59.99620 * 1 2 3 26 26 H 1.08997 * 109.46455 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47129 * 240.00503 * 2 1 3 28 28 H 1.08993 * 109.47372 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47422 * 300.00690 * 3 2 1 30 30 H 1.09002 * 109.46615 * 60.00188 * 3 2 1 31 31 H 1.07992 * 125.98970 * 179.97438 * 6 5 4 32 32 H 1.07994 * 126.59088 * 179.97438 * 7 6 5 33 33 H 1.08997 * 109.47297 * 205.00356 * 9 8 4 34 34 H 1.09004 * 109.47190 * 325.00437 * 9 8 4 35 35 H 1.08001 * 119.87499 * 359.97260 * 11 10 9 36 36 H 1.07990 * 120.12495 * 180.27175 * 12 11 10 37 37 H 0.97004 * 119.99606 * 180.02562 * 17 16 14 38 38 H 1.08001 * 120.12510 * 180.02562 * 22 13 12 39 39 H 1.08001 * 119.87831 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7105 1.2303 5 7 1.7908 -0.3589 2.4637 6 6 2.4014 -1.2157 3.2956 7 6 3.0454 -2.1334 2.5496 8 7 2.8121 -1.8131 1.2393 9 6 3.3144 -2.5321 0.0659 10 6 4.5848 -1.8808 -0.4166 11 6 4.5224 -0.8653 -1.3586 12 6 5.6757 -0.2595 -1.8021 13 6 6.9223 -0.6825 -1.3048 14 6 8.1142 -0.0720 -1.7583 15 1 8.9978 -0.0852 -1.1373 16 6 8.1491 0.5496 -3.0116 17 7 7.2283 0.2805 -3.9010 18 14 9.5107 1.7633 -3.4147 19 1 10.6102 1.0575 -4.1206 20 1 8.9730 2.8388 -4.2863 21 1 10.0312 2.3587 -2.1578 22 6 6.9738 -1.7179 -0.3533 23 6 5.8073 -2.3048 0.0809 24 1 -0.3632 0.5137 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 2.3803 -1.1764 4.3746 32 1 3.6337 -2.9621 2.9148 33 1 3.5170 -3.5689 0.3343 34 1 2.5667 -2.5014 -0.7266 35 1 3.5649 -0.5459 -1.7426 36 1 5.6246 0.5343 -2.5326 37 1 7.2527 0.7110 -4.7699 38 1 7.9251 -2.0501 0.0353 39 1 5.8444 -3.0994 0.8114 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342502039.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:32 Heat of formation + Delta-G solvation = 47.023496 kcal Electronic energy + Delta-G solvation = -20324.747271 eV Core-core repulsion = 17424.654214 eV Total energy + Delta-G solvation = -2900.093058 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.95631 -39.51250 -36.27426 -36.13816 -34.67043 -31.82504 -31.20471 -29.66388 -28.51473 -28.01594 -25.69284 -23.78746 -22.90080 -22.34107 -21.72733 -19.89831 -19.27743 -18.06478 -17.22695 -16.75941 -16.05962 -15.80402 -15.43637 -15.27809 -15.14381 -14.50995 -14.34718 -14.30258 -13.87393 -13.78366 -13.46253 -13.25756 -13.05136 -12.92931 -12.74395 -12.47236 -12.34579 -12.25014 -12.08495 -11.86652 -11.63250 -11.27462 -11.07133 -10.81738 -10.38771 -9.42518 -9.31954 -9.15837 -8.70317 -6.40500 0.78220 1.10816 1.27636 1.35977 1.44097 1.50855 2.13589 2.18226 2.29764 2.71815 3.52947 3.68955 3.86510 3.91243 4.13821 4.20456 4.27352 4.33056 4.48967 4.49851 4.57578 4.70540 4.81750 4.82503 4.95306 4.97216 4.98994 5.08505 5.11281 5.27907 5.34240 5.36950 5.39105 5.58366 5.65089 5.87708 5.98953 6.04987 6.13603 6.32661 6.40504 6.64467 6.88309 6.96934 7.29159 8.26408 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023804 B = 0.005035 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.967419 B = 5559.304390 C = 6103.098067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.011 4.011 3 C -0.133 4.133 4 C 0.202 3.798 5 N -0.525 5.525 6 C -0.059 4.059 7 C -0.059 4.059 8 N -0.444 5.444 9 C 0.167 3.833 10 C -0.237 4.237 11 C -0.078 4.078 12 C -0.191 4.191 13 C 0.085 3.915 14 C -0.499 4.499 15 H 0.073 0.927 16 C 0.039 3.961 17 N -0.818 5.818 18 Si 0.978 3.022 19 H -0.261 1.261 20 H -0.264 1.264 21 H -0.262 1.262 22 C -0.249 4.249 23 C -0.069 4.069 24 H 0.056 0.944 25 H 0.082 0.918 26 H 0.054 0.946 27 H 0.084 0.916 28 H 0.030 0.970 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.183 0.817 32 H 0.194 0.806 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.290 0.710 38 H 0.094 0.906 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.801 -2.669 3.978 10.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.031 4.031 3 C -0.191 4.191 4 C -0.060 4.060 5 N -0.244 5.244 6 C -0.207 4.207 7 C -0.193 4.193 8 N -0.125 5.125 9 C 0.047 3.953 10 C -0.239 4.239 11 C -0.097 4.097 12 C -0.211 4.211 13 C 0.082 3.918 14 C -0.528 4.528 15 H 0.091 0.909 16 C -0.177 4.177 17 N -0.443 5.443 18 Si 0.799 3.201 19 H -0.185 1.185 20 H -0.188 1.188 21 H -0.186 1.186 22 C -0.269 4.269 23 C -0.087 4.087 24 H 0.075 0.925 25 H 0.101 0.899 26 H 0.073 0.927 27 H 0.102 0.898 28 H 0.049 0.951 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.200 0.800 32 H 0.211 0.789 33 H 0.128 0.872 34 H 0.118 0.882 35 H 0.128 0.872 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.300 -2.071 3.850 10.277 hybrid contribution 1.573 -0.215 -0.395 1.636 sum -7.728 -2.286 3.455 8.768 Atomic orbital electron populations 1.21713 0.91853 1.02184 1.02978 1.19671 0.97366 0.95379 0.90730 1.21693 0.99846 0.94768 1.02762 1.23453 0.97406 0.89492 0.95690 1.70083 1.26046 1.28363 0.99944 1.22608 1.02610 0.95156 1.00326 1.23107 1.07759 1.05442 0.82999 1.45891 1.36677 1.22567 1.07344 1.20596 0.93610 0.95434 0.85697 1.19384 0.93802 1.05089 1.05583 1.20789 0.96948 0.95629 0.96313 1.21244 0.92231 1.03038 1.04552 1.18022 0.93729 0.89595 0.90405 1.19881 0.98052 1.32710 1.02179 0.90876 1.26717 0.99315 0.96661 0.95017 1.69853 1.33608 1.35417 1.05418 0.85249 0.77953 0.77888 0.79026 1.18522 1.18802 1.18573 1.21153 0.97282 1.01655 1.06774 1.20678 0.92013 0.98352 0.97693 0.92491 0.89943 0.92656 0.89755 0.95074 0.90053 0.92361 0.80004 0.78895 0.87156 0.88238 0.87228 0.88169 0.89918 0.88736 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.18 71.98 0.66 -2.30 16 2 C -0.01 -0.32 3.23 -11.54 -0.04 -0.36 16 3 C -0.13 -3.90 9.18 71.98 0.66 -3.24 16 4 C 0.20 6.69 6.41 138.13 0.89 7.57 16 5 N -0.52 -18.47 11.25 -188.14 -2.12 -20.59 16 6 C -0.06 -1.83 11.87 83.52 0.99 -0.84 16 7 C -0.06 -1.71 11.58 83.09 0.96 -0.75 16 8 N -0.44 -13.91 2.73 -518.34 -1.42 -15.32 16 9 C 0.17 4.89 5.80 85.63 0.50 5.39 16 10 C -0.24 -9.11 5.49 -19.67 -0.11 -9.22 16 11 C -0.08 -3.35 9.55 22.22 0.21 -3.14 16 12 C -0.19 -9.72 8.70 22.73 0.20 -9.53 16 13 C 0.08 4.52 5.57 -21.29 -0.12 4.41 16 14 C -0.50 -26.76 9.05 23.46 0.21 -26.55 16 15 H 0.07 3.82 7.91 -2.91 -0.02 3.80 16 16 C 0.04 1.93 5.14 85.26 0.44 2.37 16 17 N -0.82 -41.66 10.97 21.83 0.24 -41.42 16 18 Si 0.98 37.63 29.59 68.60 2.03 39.67 16 19 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 20 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 21 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 22 C -0.25 -11.96 9.80 22.73 0.22 -11.74 16 23 C -0.07 -2.81 9.67 22.22 0.21 -2.60 16 24 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.08 2.34 4.81 -2.39 -0.01 2.33 16 28 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.18 4.53 8.06 -2.91 -0.02 4.51 16 32 H 0.19 4.27 8.06 -2.91 -0.02 4.24 16 33 H 0.11 2.66 8.07 -2.39 -0.02 2.64 16 34 H 0.10 2.59 7.23 -2.39 -0.02 2.57 16 35 H 0.11 4.13 6.14 -2.91 -0.02 4.12 16 36 H 0.10 5.37 6.18 -2.92 -0.02 5.36 16 37 H 0.29 13.28 8.30 -92.71 -0.77 12.51 16 38 H 0.09 4.35 8.06 -2.91 -0.02 4.33 16 39 H 0.12 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -61.82 325.79 5.66 -56.16 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: 1.03 Total: 32.03 kcal Atomic # 6 Polarization: -56.41 SS G_CDS: 5.89 Total: -50.52 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -3.29 Total: -77.33 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 2.03 Total: 39.67 kcal Total: -61.82 5.66 -56.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342502039.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.180 kcal (2) G-P(sol) polarization free energy of solvation -61.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds