Wall clock time and date at job start Mon Mar 30 2020 01:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00067 * 2 1 4 4 N 1.46898 * 109.47132 * 125.95468 * 3 2 1 5 5 C 1.46891 * 111.00429 * 66.29825 * 4 3 2 6 6 C 1.50696 * 109.47409 * 66.04358 * 5 4 3 7 7 H 1.07996 * 120.00049 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00115 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00032 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00023 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47174 * 59.99681 * 10 8 6 12 12 H 1.48504 * 109.47074 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47008 * 299.99784 * 10 8 6 14 14 C 1.46906 * 110.99695 * 302.33799 * 4 3 2 15 15 C 1.50698 * 109.47218 * 288.03227 * 14 4 3 16 16 C 1.34242 * 125.03353 * 94.95125 * 15 14 4 17 17 C 1.46483 * 106.99412 * 179.97438 * 16 15 14 18 18 C 1.39636 * 134.03020 * 180.02562 * 17 16 15 19 19 C 1.36625 * 119.76582 * 179.97438 * 18 17 16 20 20 C 1.38836 * 120.52769 * 0.03068 * 19 18 17 21 21 C 1.37751 * 120.66440 * 359.97438 * 20 19 18 22 22 C 1.39120 * 119.77957 * 359.95731 * 21 20 19 23 23 N 1.36828 * 125.03317 * 274.63968 * 15 14 4 24 24 H 0.96998 * 125.06437 * 0.02562 * 23 15 14 25 25 H 1.07996 * 119.99646 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99791 * 0.02562 * 1 2 3 27 27 H 1.08006 * 120.00013 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46860 * 5.94529 * 3 2 1 29 29 H 1.09005 * 109.46631 * 245.94798 * 3 2 1 30 30 H 1.08999 * 109.47070 * 186.04764 * 5 4 3 31 31 H 1.09003 * 109.46862 * 306.04429 * 5 4 3 32 32 H 0.97000 * 120.00011 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.46381 * 48.03438 * 14 4 3 34 34 H 1.09000 * 109.46860 * 168.03151 * 14 4 3 35 35 H 1.08002 * 126.50106 * 359.97063 * 16 15 14 36 36 H 1.07996 * 120.11652 * 359.97438 * 18 17 16 37 37 H 1.08001 * 119.73783 * 180.02562 * 19 18 17 38 38 H 1.08003 * 119.66786 * 179.97438 * 20 19 18 39 39 H 1.08000 * 120.10869 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0126 1.3226 1.1211 5 6 4.0666 0.3166 0.9344 6 6 4.9116 0.6893 -0.2564 7 1 4.6882 1.5842 -0.8181 8 6 5.9698 -0.1123 -0.6288 9 7 6.2414 -1.2024 0.0549 10 14 7.0176 0.3501 -2.1045 11 1 7.6381 1.6794 -1.8740 12 1 8.0831 -0.6670 -2.2933 13 1 6.1650 0.4058 -3.3191 14 6 2.3188 1.1271 2.4012 15 6 1.5356 2.3683 2.7428 16 6 0.2362 2.5603 2.4654 17 6 -0.1170 3.8900 2.9682 18 6 -1.2932 4.6425 2.9795 19 6 -1.2967 5.8874 3.5424 20 6 -0.1395 6.4110 4.1031 21 6 1.0317 5.6860 4.1027 22 6 1.0577 4.4156 3.5362 23 7 2.0419 3.4641 3.3870 24 1 2.9581 3.5577 3.6913 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3600 2.1308 0.1064 29 1 2.6079 1.4103 -0.9385 30 1 4.6925 0.2765 1.8259 31 1 3.6115 -0.6594 0.7658 32 1 6.9857 -1.7665 -0.2073 33 1 1.6388 0.2791 2.3199 34 1 3.0508 0.9321 3.1850 35 1 -0.4235 1.8661 1.9661 36 1 -2.1970 4.2418 2.5448 37 1 -2.2068 6.4688 3.5513 38 1 -0.1579 7.3968 4.5440 39 1 1.9267 6.1022 4.5410 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590050737.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:38 Heat of formation + Delta-G solvation = 63.596885 kcal Electronic energy + Delta-G solvation = -19939.747424 eV Core-core repulsion = 17040.373043 eV Total energy + Delta-G solvation = -2899.374382 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.15590 -39.17144 -37.57085 -34.93505 -33.74681 -32.81702 -31.07076 -30.08787 -28.75341 -27.58553 -25.60520 -23.25852 -22.78268 -22.24611 -21.15780 -20.34253 -18.53918 -18.31788 -17.21604 -16.86896 -16.57036 -16.04553 -15.84658 -15.44124 -15.04969 -14.90311 -14.65969 -14.52106 -14.08207 -13.88853 -13.47678 -13.26401 -13.01540 -12.70875 -12.62397 -12.38952 -12.28449 -12.25919 -12.17145 -11.80321 -11.63703 -11.36151 -10.62934 -10.58215 -10.23000 -9.09300 -8.97422 -8.54979 -8.20161 -6.29355 0.26680 0.80415 1.39954 1.40973 1.42366 1.50255 1.77393 2.27601 2.40187 3.08061 3.12591 3.44302 3.82003 3.93765 4.09848 4.23635 4.27961 4.29225 4.39858 4.53031 4.61335 4.62368 4.69442 4.74573 4.96197 5.06428 5.10480 5.14251 5.22745 5.25138 5.33064 5.61839 5.63532 5.76413 5.77366 5.83097 5.92343 5.96896 6.07070 6.29004 6.35804 6.57956 6.71098 6.85647 7.39700 8.89867 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.024867 B = 0.004331 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.712241 B = 6462.756047 C = 6998.898573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.193 4.193 3 C 0.093 3.907 4 N -0.532 5.532 5 C 0.208 3.792 6 C -0.521 4.521 7 H 0.058 0.942 8 C 0.007 3.993 9 N -0.932 5.932 10 Si 0.962 3.038 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.269 1.269 14 C 0.110 3.890 15 C 0.102 3.898 16 C -0.212 4.212 17 C -0.131 4.131 18 C -0.085 4.085 19 C -0.152 4.152 20 C -0.104 4.104 21 C -0.142 4.142 22 C 0.077 3.923 23 N -0.585 5.585 24 H 0.419 0.581 25 H 0.108 0.892 26 H 0.111 0.889 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.004 0.996 31 H -0.021 1.021 32 H 0.264 0.736 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.151 0.849 36 H 0.135 0.865 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.556 11.007 6.770 19.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.212 4.212 3 C -0.035 4.035 4 N -0.254 5.254 5 C 0.082 3.918 6 C -0.559 4.559 7 H 0.077 0.923 8 C -0.192 4.192 9 N -0.573 5.573 10 Si 0.787 3.213 11 H -0.196 1.196 12 H -0.208 1.208 13 H -0.194 1.194 14 C -0.018 4.018 15 C -0.007 4.007 16 C -0.237 4.237 17 C -0.136 4.136 18 C -0.103 4.103 19 C -0.171 4.171 20 C -0.123 4.123 21 C -0.163 4.163 22 C -0.030 4.030 23 N -0.187 5.187 24 H 0.257 0.743 25 H 0.127 0.873 26 H 0.129 0.871 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.022 0.978 31 H -0.004 1.004 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.169 0.831 36 H 0.153 0.847 37 H 0.164 0.836 38 H 0.168 0.832 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.037 11.300 6.827 19.270 hybrid contribution 1.188 -1.176 -0.595 1.775 sum -12.849 10.124 6.233 17.505 Atomic orbital electron populations 1.23954 0.94670 1.02720 0.99398 1.23501 0.97203 0.99291 1.01247 1.21191 0.93473 0.94240 0.94591 1.62265 1.11814 1.50519 1.00845 1.19405 0.88483 0.88244 0.95688 1.21385 1.13090 1.08563 1.12888 0.92332 1.25793 0.98703 0.94824 0.99842 1.70058 1.30459 1.15069 1.41671 0.85540 0.78228 0.77965 0.79517 1.19582 1.20845 1.19421 1.20641 0.96304 0.92052 0.92847 1.20170 0.93482 0.89456 0.97594 1.21617 0.94724 0.97274 1.10100 1.19503 0.94355 0.95677 1.04059 1.20546 0.96235 0.94450 0.99101 1.20961 0.99435 0.95880 1.00821 1.21161 0.91572 1.00277 0.99277 1.20351 1.00381 0.91675 1.03865 1.18622 0.88990 0.92573 1.02864 1.41793 1.11954 1.13541 1.51461 0.74349 0.87338 0.87103 0.89812 0.90269 0.91743 0.97837 1.00375 0.92729 0.91878 0.90904 0.83109 0.84740 0.83553 0.83156 0.84944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.58 13.86 67.78 0.94 -3.64 16 2 C -0.19 -6.72 7.38 25.65 0.19 -6.54 16 3 C 0.09 3.57 5.45 85.56 0.47 4.04 16 4 N -0.53 -22.35 4.65 -909.95 -4.23 -26.58 16 5 C 0.21 10.69 4.57 85.56 0.39 11.08 16 6 C -0.52 -29.05 8.42 25.60 0.22 -28.84 16 7 H 0.06 3.25 7.14 -2.91 -0.02 3.23 16 8 C 0.01 0.37 5.46 84.65 0.46 0.83 16 9 N -0.93 -55.23 13.29 21.45 0.28 -54.94 16 10 Si 0.96 44.10 29.54 68.60 2.03 46.12 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 13 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 14 C 0.11 3.88 5.33 85.56 0.46 4.34 16 15 C 0.10 3.26 6.05 40.87 0.25 3.51 16 16 C -0.21 -6.31 10.06 23.51 0.24 -6.07 16 17 C -0.13 -3.77 6.37 -20.20 -0.13 -3.90 16 18 C -0.08 -1.98 10.05 22.23 0.22 -1.75 16 19 C -0.15 -2.95 9.97 22.04 0.22 -2.73 16 20 C -0.10 -2.00 10.01 22.30 0.22 -1.78 16 21 C -0.14 -3.29 10.08 22.37 0.23 -3.07 16 22 C 0.08 2.19 7.28 39.03 0.28 2.48 16 23 N -0.58 -17.29 6.07 -175.91 -1.07 -18.36 16 24 H 0.42 11.13 8.96 -92.71 -0.83 10.29 16 25 H 0.11 2.52 8.06 -2.91 -0.02 2.50 16 26 H 0.11 2.63 7.15 -2.91 -0.02 2.61 16 27 H 0.08 3.37 6.82 -2.91 -0.02 3.35 16 28 H 0.08 2.80 6.54 -2.39 -0.02 2.78 16 29 H 0.06 2.79 6.71 -2.38 -0.02 2.78 16 30 H 0.00 0.20 7.86 -2.39 -0.02 0.18 16 31 H -0.02 -1.18 6.43 -2.39 -0.02 -1.19 16 32 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 33 H 0.06 2.17 6.62 -2.39 -0.02 2.15 16 34 H 0.07 2.57 7.81 -2.39 -0.02 2.56 16 35 H 0.15 4.04 6.87 -2.91 -0.02 4.02 16 36 H 0.13 2.55 8.06 -2.91 -0.02 2.52 16 37 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.13 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -64.10 322.72 1.89 -62.22 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: 0.22 Total: 23.57 kcal Atomic # 6 Polarization: -36.69 SS G_CDS: 4.65 Total: -32.04 kcal Atomic # 7 Polarization: -94.87 SS G_CDS: -5.01 Total: -99.88 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -64.10 1.89 -62.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590050737.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.815 kcal (2) G-P(sol) polarization free energy of solvation -64.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds