Wall clock time and date at job start Mon Mar 30 2020 01:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46904 * 110.99963 * 183.95369 * 12 2 1 14 14 C 1.46905 * 110.99800 * 60.00278 * 12 2 1 15 15 C 1.50700 * 109.47326 * 189.99540 * 14 12 2 16 16 C 1.36163 * 120.19417 * 259.72511 * 15 14 12 17 17 C 1.39318 * 120.86358 * 179.72714 * 16 15 14 18 18 C 1.36112 * 121.06833 * 0.57544 * 17 16 15 19 19 C 1.40559 * 119.74677 * 359.70654 * 18 17 16 20 20 N 1.33686 * 121.08139 * 180.02562 * 19 18 17 21 21 C 1.31088 * 121.32224 * 180.02562 * 20 19 18 22 22 C 1.39345 * 121.74779 * 359.95612 * 21 20 19 23 23 C 1.36573 * 119.94083 * 0.02562 * 22 21 20 24 24 C 1.40389 * 120.18632 * 80.00114 * 15 14 12 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.46991 * 60.00787 * 13 12 2 30 30 H 1.08998 * 109.46942 * 180.02562 * 13 12 2 31 31 H 1.08998 * 109.47155 * 300.00314 * 13 12 2 32 32 H 1.08997 * 109.47089 * 310.00066 * 14 12 2 33 33 H 1.09006 * 109.47115 * 69.99884 * 14 12 2 34 34 H 1.08001 * 119.57205 * 0.02562 * 16 15 14 35 35 H 1.08000 * 119.47114 * 180.26129 * 17 16 15 36 36 H 1.08006 * 120.12521 * 179.68430 * 18 17 16 37 37 H 1.07997 * 119.12847 * 179.97438 * 21 20 19 38 38 H 1.08005 * 120.02647 * 180.02562 * 22 21 20 39 39 H 1.07993 * 120.92468 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0196 -0.6926 -1.1994 13 6 3.4851 -0.7946 -1.1870 14 6 1.5486 -0.0265 -2.4211 15 6 1.8580 -0.8912 -3.6159 16 6 2.9396 -0.6187 -4.3968 17 6 3.2418 -1.4122 -5.5014 18 6 2.4598 -2.4740 -5.8385 19 6 1.3311 -2.7839 -5.0601 20 7 0.5450 -3.8208 -5.3666 21 6 -0.5090 -4.1138 -4.6443 22 6 -0.8621 -3.3634 -3.5245 23 6 -0.1017 -2.2907 -3.1554 24 6 1.0292 -1.9789 -3.9336 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.9026 -0.5284 4.4375 29 1 3.8029 -1.3533 -0.3067 30 1 3.8209 -1.3110 -2.0862 31 1 3.9187 0.2050 -1.1591 32 1 0.4722 0.1323 -2.3564 33 1 2.0519 0.9345 -2.5281 34 1 3.5743 0.2207 -4.1541 35 1 4.1077 -1.1781 -6.1029 36 1 2.7054 -3.0760 -6.7010 37 1 -1.1197 -4.9593 -4.9243 38 1 -1.7363 -3.6299 -2.9490 39 1 -0.3604 -1.6984 -2.2902 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595602077.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:40 Heat of formation + Delta-G solvation = 70.575671 kcal Electronic energy + Delta-G solvation = -20549.657130 eV Core-core repulsion = 17650.585371 eV Total energy + Delta-G solvation = -2899.071759 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.77129 -37.87178 -36.55829 -33.71492 -32.51982 -30.79818 -30.44258 -29.62509 -27.04239 -24.71190 -24.10774 -23.65053 -23.27336 -20.60975 -19.43857 -18.03345 -16.98153 -16.87406 -16.64491 -15.35126 -14.67330 -14.60426 -14.22744 -14.08894 -13.94049 -13.62616 -13.11552 -12.93657 -12.82040 -12.56654 -12.22814 -11.96111 -11.59124 -11.54655 -11.30375 -11.03025 -10.82286 -10.65243 -10.44081 -10.25883 -10.19608 -9.58375 -9.35379 -9.09542 -8.64416 -8.62339 -8.04924 -7.44304 -6.12128 -4.11329 0.53861 0.95557 2.15422 3.03416 3.20852 3.30497 3.33524 4.21710 4.33761 4.38403 4.67966 4.79839 4.89396 4.99207 5.10785 5.18544 5.24579 5.26949 5.41858 5.47609 5.73861 5.81026 5.99416 6.06391 6.09600 6.16326 6.22181 6.22975 6.29528 6.36620 6.45638 6.49593 6.61428 6.69069 6.76227 6.86123 6.97398 7.17704 7.49707 7.84126 7.97949 8.01080 8.58097 8.94665 9.49094 11.00522 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.025146 B = 0.005391 C = 0.004896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.221364 B = 5192.770669 C = 5717.986319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.182 3.818 3 H -0.001 1.001 4 C -0.506 4.506 5 H 0.084 0.916 6 C 0.071 3.929 7 N -0.897 5.897 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.519 5.519 13 C 0.036 3.964 14 C 0.076 3.924 15 C -0.032 4.032 16 C -0.125 4.125 17 C -0.095 4.095 18 C -0.107 4.107 19 C 0.125 3.875 20 N -0.485 5.485 21 C 0.130 3.870 22 C -0.189 4.189 23 C -0.032 4.032 24 C -0.086 4.086 25 H 0.029 0.971 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.264 0.736 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.014 0.986 32 H 0.084 0.916 33 H 0.038 0.962 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.154 0.846 38 H 0.135 0.865 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.951 -0.470 -16.543 16.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.074 3.926 3 H 0.017 0.983 4 C -0.544 4.544 5 H 0.101 0.899 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.716 3.284 9 H -0.205 1.205 10 H -0.224 1.224 11 H -0.195 1.195 12 N -0.243 5.243 13 C -0.112 4.112 14 C -0.052 4.052 15 C -0.033 4.033 16 C -0.144 4.144 17 C -0.115 4.115 18 C -0.126 4.126 19 C 0.004 3.996 20 N -0.194 5.194 21 C -0.042 4.042 22 C -0.209 4.209 23 C -0.057 4.057 24 C -0.088 4.088 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.032 0.968 32 H 0.103 0.897 33 H 0.056 0.944 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.172 0.828 38 H 0.153 0.847 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.831 -1.392 -17.076 17.365 hybrid contribution -0.508 2.068 1.097 2.396 sum -3.339 0.676 -15.979 16.338 Atomic orbital electron populations 1.22277 0.98711 1.01317 0.98395 1.19719 0.91343 0.92751 0.88737 0.98341 1.20958 1.32070 1.13634 0.87771 0.89851 1.24920 0.95814 0.96560 0.95807 1.69877 1.45585 1.40198 0.97902 0.86898 0.80785 0.83832 0.76901 1.20504 1.22437 1.19478 1.62018 1.10461 1.51456 1.00410 1.22275 0.87574 0.99379 1.02017 1.21224 1.01447 0.93665 0.88821 1.19763 0.93883 0.94379 0.95315 1.20810 0.97357 1.00617 0.95620 1.20824 0.99122 0.94725 0.96796 1.20685 0.93891 0.98103 0.99902 1.18863 0.95233 0.91918 0.93546 1.68012 1.05076 1.15938 1.30329 1.22886 0.92787 0.97639 0.90892 1.21875 1.02187 0.97560 0.99263 1.21712 0.91574 0.95447 0.97004 1.18660 0.96872 0.96916 0.96351 0.95205 0.93788 0.91966 0.92567 0.89879 0.93322 0.96763 0.89746 0.94436 0.85880 0.85627 0.85219 0.82831 0.84724 0.83592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 8.35 37.16 0.31 -2.78 16 2 C 0.18 4.12 1.65 -68.86 -0.11 4.01 16 3 H 0.00 -0.02 7.20 -51.93 -0.37 -0.39 16 4 C -0.51 -13.71 8.51 -34.44 -0.29 -14.00 16 5 H 0.08 2.47 6.64 -52.49 -0.35 2.13 16 6 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 7 N -0.90 -26.85 13.96 55.43 0.77 -26.07 16 8 Si 0.89 21.36 24.37 -169.99 -4.14 17.22 16 9 H -0.28 -6.52 6.87 56.52 0.39 -6.13 16 10 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.27 -6.25 6.53 56.52 0.37 -5.88 16 12 N -0.52 -10.27 4.61 -237.72 -1.10 -11.37 16 13 C 0.04 0.68 9.01 60.07 0.54 1.22 16 14 C 0.08 1.25 4.19 -4.97 -0.02 1.23 16 15 C -0.03 -0.49 4.59 -104.56 -0.48 -0.97 16 16 C -0.13 -1.66 8.54 -39.93 -0.34 -2.00 16 17 C -0.09 -1.13 9.94 -39.94 -0.40 -1.52 16 18 C -0.11 -1.41 9.98 -39.47 -0.39 -1.80 16 19 C 0.13 1.92 6.60 -84.86 -0.56 1.36 16 20 N -0.49 -7.25 10.34 -10.97 -0.11 -7.36 16 21 C 0.13 1.64 11.15 -17.46 -0.19 1.45 16 22 C -0.19 -2.40 10.03 -39.77 -0.40 -2.79 16 23 C -0.03 -0.47 9.37 -39.22 -0.37 -0.84 16 24 C -0.09 -1.35 5.74 -106.80 -0.61 -1.96 16 25 H 0.03 0.51 6.20 -51.93 -0.32 0.19 16 26 H 0.04 0.96 3.27 -51.93 -0.17 0.79 16 27 H 0.06 1.27 8.09 -51.93 -0.42 0.85 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.08 1.78 6.23 -51.93 -0.32 1.46 16 30 H 0.05 0.83 6.43 -51.93 -0.33 0.50 16 31 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 1.33 4.70 -51.93 -0.24 1.09 16 33 H 0.04 0.59 7.96 -51.93 -0.41 0.18 16 34 H 0.12 1.44 8.01 -52.49 -0.42 1.02 16 35 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 37 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 39 H 0.15 2.20 6.52 -52.49 -0.34 1.86 16 LS Contribution 306.83 15.07 4.62 4.62 Total: -1.00 -30.68 306.83 -8.38 -39.06 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.01 Total: 1.39 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -3.42 Total: -17.50 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: -0.44 Total: -44.80 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.14 Total: 17.22 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.68 -8.38 -39.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595602077.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.639 kcal (2) G-P(sol) polarization free energy of solvation -30.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds