Wall clock time and date at job start Mon Mar 30 2020 01:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99991 * 2 1 4 4 H 1.48500 * 109.47122 * 269.99362 * 3 2 1 5 5 H 1.48504 * 109.47315 * 29.99237 * 3 2 1 6 6 H 1.48501 * 109.47692 * 149.99361 * 3 2 1 7 7 C 1.37882 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99754 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00024 * 180.02562 * 7 2 1 10 10 N 1.46897 * 109.47459 * 185.35302 * 9 7 2 11 11 C 1.46964 * 110.99782 * 295.37484 * 10 9 7 12 12 C 1.53055 * 109.35961 * 183.18367 * 11 10 9 13 13 N 1.46951 * 109.36491 * 301.59497 * 12 11 10 14 14 C 1.46902 * 111.00008 * 183.19102 * 13 12 11 15 15 H 1.09001 * 109.30987 * 187.00894 * 14 13 12 16 16 C 1.52580 * 109.39104 * 67.25311 * 14 13 12 17 17 C 1.52581 * 110.69247 * 169.15600 * 16 14 13 18 18 C 1.53101 * 109.95713 * 70.69678 * 17 16 14 19 19 S 1.81742 * 108.83971 * 296.97616 * 18 17 16 20 20 C 1.53120 * 109.36279 * 306.78826 * 14 13 12 21 21 C 1.46962 * 110.88139 * 59.32324 * 13 12 11 22 22 C 1.46960 * 110.99762 * 59.16874 * 10 9 7 23 23 H 0.96992 * 120.00089 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47430 * 65.35426 * 9 7 2 25 25 H 1.08997 * 109.47462 * 305.35776 * 9 7 2 26 26 H 1.08999 * 109.49071 * 63.22116 * 11 10 9 27 27 H 1.08999 * 109.48855 * 303.14653 * 11 10 9 28 28 H 1.09002 * 109.48593 * 181.63209 * 12 11 10 29 29 H 1.09004 * 109.49066 * 61.56609 * 12 11 10 30 30 H 1.08996 * 109.22340 * 48.85554 * 16 14 13 31 31 H 1.09003 * 109.22462 * 289.45906 * 16 14 13 32 32 H 1.09003 * 109.38727 * 190.84395 * 17 16 14 33 33 H 1.08999 * 109.39033 * 310.64981 * 17 16 14 34 34 H 1.08998 * 109.57373 * 56.78098 * 18 17 16 35 35 H 1.08996 * 109.57406 * 177.16144 * 18 17 16 36 36 H 1.09004 * 109.60447 * 63.40288 * 20 14 13 37 37 H 1.08997 * 109.57393 * 303.00263 * 20 14 13 38 38 H 1.09008 * 109.48624 * 60.64578 * 21 13 12 39 39 H 1.08992 * 109.48714 * 180.70778 * 21 13 12 40 40 H 1.09004 * 109.48998 * 296.78333 * 22 10 9 41 41 H 1.09004 * 109.48644 * 56.82325 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0013 -2.5730 -0.1276 11 6 3.6221 -3.3779 1.0421 12 6 4.2172 -4.7815 0.9067 13 7 3.7303 -5.3995 -0.3345 14 6 4.2200 -6.7785 -0.4633 15 1 3.9488 -7.1671 -1.4449 16 6 3.5828 -7.6454 0.6186 17 6 3.8555 -9.1234 0.3552 18 6 5.3329 -9.4354 0.6081 19 16 6.3426 -8.4888 -0.5698 20 6 5.7438 -6.7921 -0.3134 21 6 4.1094 -4.5946 -1.5042 22 6 3.5144 -3.1911 -1.3688 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.7653 0.9352 25 1 3.8752 -0.5996 -0.8369 26 1 2.5358 -3.4474 1.0990 27 1 4.0047 -2.9065 1.9474 28 1 3.9132 -5.3891 1.7590 29 1 5.3048 -4.7141 0.8771 30 1 2.5063 -7.4750 0.6272 31 1 3.9974 -7.3712 1.5887 32 1 3.2389 -9.7291 1.0193 33 1 3.6099 -9.3577 -0.6806 34 1 5.5970 -9.1509 1.6266 35 1 5.5103 -10.5015 0.4671 36 1 6.0159 -6.4561 0.6872 37 1 6.1898 -6.1311 -1.0565 38 1 5.1958 -4.5251 -1.5611 39 1 3.7270 -5.0660 -2.4094 40 1 2.4269 -3.2584 -1.3392 41 1 3.8181 -2.5832 -2.2211 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601315417.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:54 Heat of formation + Delta-G solvation = -13.412587 kcal Electronic energy + Delta-G solvation = -19550.172344 eV Core-core repulsion = 16782.902532 eV Total energy + Delta-G solvation = -2767.269812 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.74154 -38.19199 -35.63970 -34.35889 -31.88269 -31.65354 -29.37303 -28.27356 -26.53559 -24.58955 -23.85110 -22.80560 -21.30307 -20.32719 -18.83126 -18.03535 -17.02966 -16.44154 -16.23314 -15.90114 -15.86241 -15.60600 -15.24928 -15.02926 -14.59373 -14.36815 -14.32441 -13.97494 -13.64419 -13.54254 -12.94913 -12.76805 -12.55258 -12.39910 -12.30193 -12.18919 -11.98328 -11.97557 -11.82867 -11.70973 -11.52407 -11.16923 -10.79225 -10.74921 -9.40748 -9.02069 -8.59877 -8.31578 -6.36879 0.79521 1.35296 1.36521 1.48671 1.56118 2.33417 2.90034 3.03414 3.29802 3.58267 3.78681 3.91193 3.96518 4.10248 4.16757 4.22374 4.27285 4.40265 4.47003 4.53276 4.58656 4.59904 4.72270 4.80428 4.85061 4.92150 4.97448 5.03178 5.04706 5.10381 5.15756 5.18778 5.26288 5.30751 5.50434 6.00564 6.05625 6.17829 6.33970 6.39120 6.70317 7.29928 8.84830 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.044679 B = 0.004046 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.547410 B = 6919.536195 C = 7144.543490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.011 3.989 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.247 1.247 7 C -0.548 4.548 8 H 0.033 0.967 9 C 0.161 3.839 10 N -0.530 5.530 11 C 0.062 3.938 12 C 0.068 3.932 13 N -0.540 5.540 14 C 0.093 3.907 15 H 0.089 0.911 16 C -0.119 4.119 17 C -0.112 4.112 18 C -0.072 4.072 19 S -0.297 6.297 20 C -0.101 4.101 21 C 0.068 3.932 22 C 0.064 3.936 23 H 0.266 0.734 24 H 0.029 0.971 25 H 0.030 0.970 26 H 0.014 0.986 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.048 0.952 39 H 0.086 0.914 40 H 0.015 0.985 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.199 -17.701 1.038 21.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.187 4.187 3 Si 0.774 3.226 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.170 1.170 7 C -0.587 4.587 8 H 0.052 0.948 9 C 0.033 3.967 10 N -0.253 5.253 11 C -0.067 4.067 12 C -0.060 4.060 13 N -0.264 5.264 14 C -0.016 4.016 15 H 0.107 0.893 16 C -0.156 4.156 17 C -0.152 4.152 18 C -0.220 4.220 19 S -0.072 6.072 20 C -0.251 4.251 21 C -0.060 4.060 22 C -0.064 4.064 23 H 0.075 0.925 24 H 0.047 0.953 25 H 0.048 0.952 26 H 0.032 0.968 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.138 0.862 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.066 0.934 39 H 0.105 0.895 40 H 0.034 0.966 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.865 -17.958 0.340 22.094 hybrid contribution -1.285 1.634 0.739 2.206 sum 11.580 -16.324 1.079 20.043 Atomic orbital electron populations 1.70083 1.08382 1.28144 1.52213 1.25930 0.95507 1.03421 0.93860 0.85663 0.79458 0.78306 0.79198 1.19191 1.21050 1.16997 1.21875 0.92681 0.93149 1.50972 0.94845 1.20021 0.91897 0.87995 0.96795 1.62664 1.57490 1.02696 1.02478 1.22002 0.97586 0.93394 0.93718 1.22147 0.97714 0.93484 0.92689 1.62381 1.59420 1.02014 1.02631 1.21967 0.90042 0.88615 1.01024 0.89260 1.21541 1.01878 0.94380 0.97846 1.21677 0.94506 0.95398 1.03584 1.23556 0.96324 1.02478 0.99652 1.86966 1.56199 1.06441 1.57568 1.24127 1.00105 0.95254 1.05622 1.22120 0.98410 0.92060 0.93383 1.21954 0.97137 0.94543 0.92802 0.92538 0.95283 0.95200 0.96797 0.90976 0.89337 0.93259 0.90876 0.91582 0.88679 0.90720 0.89199 0.86243 0.89493 0.88482 0.93425 0.89547 0.96632 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.41 13.96 21.45 0.30 -59.11 16 2 C 0.01 0.62 5.47 84.66 0.46 1.09 16 3 Si 0.95 43.95 27.37 68.60 1.88 45.83 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.25 -10.59 6.70 99.48 0.67 -9.92 16 7 C -0.55 -31.28 8.21 25.60 0.21 -31.07 16 8 H 0.03 2.16 6.07 -2.91 -0.02 2.14 16 9 C 0.16 7.65 4.21 85.56 0.36 8.01 16 10 N -0.53 -21.79 4.92 -900.27 -4.43 -26.21 16 11 C 0.06 2.35 5.32 86.31 0.46 2.81 16 12 C 0.07 1.94 4.74 86.31 0.41 2.35 16 13 N -0.54 -15.29 4.65 -871.05 -4.05 -19.34 16 14 C 0.09 2.03 2.03 44.82 0.09 2.12 16 15 H 0.09 2.00 7.91 -2.39 -0.02 1.98 16 16 C -0.12 -2.19 4.58 30.32 0.14 -2.05 16 17 C -0.11 -1.55 5.75 30.49 0.18 -1.37 16 18 C -0.07 -0.99 6.45 72.02 0.46 -0.52 16 19 S -0.30 -5.85 22.33 -56.49 -1.26 -7.11 16 20 C -0.10 -2.08 4.88 72.02 0.35 -1.73 16 21 C 0.07 2.03 5.34 86.31 0.46 2.49 16 22 C 0.06 2.51 5.24 86.31 0.45 2.96 16 23 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 24 H 0.03 1.37 7.55 -2.38 -0.02 1.36 16 25 H 0.03 1.40 7.27 -2.39 -0.02 1.38 16 26 H 0.01 0.63 6.76 -2.39 -0.02 0.62 16 27 H 0.07 2.63 8.12 -2.39 -0.02 2.61 16 28 H 0.09 2.24 6.60 -2.39 -0.02 2.22 16 29 H 0.05 1.33 6.48 -2.38 -0.02 1.31 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.19 6.95 -2.39 -0.02 1.17 16 32 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.07 1.10 8.05 -2.39 -0.02 1.08 16 34 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.09 1.79 6.60 -2.39 -0.02 1.77 16 37 H 0.10 2.15 6.66 -2.39 -0.02 2.13 16 38 H 0.05 1.32 6.71 -2.38 -0.02 1.31 16 39 H 0.09 2.32 8.06 -2.39 -0.02 2.30 16 40 H 0.02 0.73 6.63 -2.38 -0.02 0.71 16 41 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 Total: -1.00 -65.29 311.82 -2.57 -67.85 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.96 Total: 13.02 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: 4.04 Total: -14.92 kcal Atomic # 7 Polarization: -96.49 SS G_CDS: -8.18 Total: -104.67 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.88 Total: 45.83 kcal Atomic # 16 Polarization: -5.85 SS G_CDS: -1.26 Total: -7.11 kcal Total: -65.29 -2.57 -67.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601315417.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.441 kcal (2) G-P(sol) polarization free energy of solvation -65.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds