Wall clock time and date at job start Mon Mar 30 2020 00:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.28638 * 126.24822 * 2 1 4 4 C 1.36794 * 113.98842 * 180.02562 * 3 2 1 5 5 C 1.39881 * 131.35963 * 180.02562 * 4 3 2 6 6 C 1.37834 * 120.05233 * 180.02562 * 5 4 3 7 7 C 1.38369 * 120.52467 * 0.02562 * 6 5 4 8 8 C 1.38531 * 119.92569 * 0.23469 * 7 6 5 9 9 C 1.37257 * 119.91395 * 359.49638 * 8 7 6 10 10 C 1.50762 * 134.17731 * 180.23807 * 9 8 7 11 11 C 1.52477 * 110.67161 * 298.76681 * 10 9 8 12 12 C 1.53276 * 109.41778 * 183.04882 * 11 10 9 13 13 N 1.46931 * 108.73648 * 306.21866 * 12 11 10 14 14 C 1.36939 * 120.59322 * 234.10206 * 13 12 11 15 15 H 1.08004 * 119.99577 * 153.80922 * 14 13 12 16 16 C 1.38810 * 120.00312 * 333.81971 * 14 13 12 17 17 N 1.31621 * 119.99629 * 339.23367 * 16 14 13 18 18 Si 1.86793 * 120.00347 * 159.23567 * 16 14 13 19 19 H 1.48498 * 109.47204 * 85.77563 * 18 16 14 20 20 H 1.48497 * 109.47395 * 205.77462 * 18 16 14 21 21 H 1.48497 * 109.46976 * 325.77654 * 18 16 14 22 22 C 1.46931 * 118.81168 * 54.12734 * 13 12 11 23 23 C 1.52508 * 110.57543 * 61.98822 * 10 9 8 24 24 H 1.09000 * 109.47607 * 58.87165 * 1 2 3 25 25 H 1.08996 * 109.47700 * 178.87426 * 1 2 3 26 26 H 1.09005 * 109.47215 * 298.87020 * 1 2 3 27 27 H 1.08001 * 119.96954 * 0.02562 * 5 4 3 28 28 H 1.08005 * 119.73749 * 180.02562 * 6 5 4 29 29 H 1.07993 * 120.03105 * 179.97438 * 7 6 5 30 30 H 1.07993 * 120.03929 * 179.73142 * 8 7 6 31 31 H 1.09005 * 109.48194 * 303.03766 * 11 10 9 32 32 H 1.09002 * 109.47673 * 63.07032 * 11 10 9 33 33 H 1.08997 * 109.59394 * 186.43841 * 12 11 10 34 34 H 1.09004 * 109.58598 * 65.98767 * 12 11 10 35 35 H 0.97002 * 120.00203 * 180.02562 * 17 16 14 36 36 H 1.08994 * 109.59536 * 186.08700 * 22 13 12 37 37 H 1.08993 * 109.59771 * 65.62432 * 22 13 12 38 38 H 1.09003 * 109.48698 * 296.85422 * 23 10 9 39 39 H 1.08998 * 109.48474 * 56.89236 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2676 1.0374 0.0000 4 6 3.6043 0.7469 -0.0006 5 6 4.7305 1.5766 -0.0003 6 6 5.9939 1.0256 -0.0015 7 6 6.1615 -0.3479 -0.0036 8 6 5.0534 -1.1794 -0.0094 9 6 3.7919 -0.6387 -0.0025 10 6 2.4002 -1.2185 -0.0011 11 6 2.1634 -2.0528 -1.2552 12 6 0.7187 -2.5647 -1.2615 13 7 0.4603 -3.2641 0.0046 14 6 -0.0169 -4.5477 0.0069 15 1 0.1834 -5.1967 0.8466 16 6 -0.7577 -5.0147 -1.0701 17 7 -1.3482 -4.1630 -1.8814 18 14 -0.9168 -6.8519 -1.3679 19 1 -2.0443 -7.3879 -0.5637 20 1 -1.1752 -7.0993 -2.8091 21 1 0.3427 -7.5291 -0.9674 22 6 0.7225 -2.5615 1.2681 23 6 2.1674 -2.0502 1.2559 24 1 -0.3634 0.5312 -0.8797 25 1 -0.3634 -1.0274 -0.0202 26 1 -0.3634 0.4962 0.9000 27 1 4.6099 2.6499 0.0009 28 1 6.8599 1.6709 -0.0009 29 1 7.1550 -0.7712 -0.0050 30 1 5.1821 -2.2516 -0.0154 31 1 2.3351 -1.4379 -2.1387 32 1 2.8492 -2.9000 -1.2630 33 1 0.5784 -3.2532 -2.0947 34 1 0.0332 -1.7229 -1.3605 35 1 -1.8662 -4.4893 -2.6338 36 1 0.5847 -3.2479 2.1034 37 1 0.0377 -1.7194 1.3671 38 1 2.8529 -2.8977 1.2633 39 1 2.3422 -1.4334 2.1375 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602858890.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:30 Heat of formation + Delta-G solvation = 95.257718 kcal Electronic energy + Delta-G solvation = -21155.227900 eV Core-core repulsion = 18257.226435 eV Total energy + Delta-G solvation = -2898.001465 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.40176 -37.77784 -36.01506 -33.09582 -31.44582 -30.73182 -30.17189 -29.48989 -27.52175 -25.63294 -23.18947 -22.34511 -22.09128 -20.78965 -20.02768 -18.51303 -16.92077 -15.95061 -15.29739 -15.07493 -14.87515 -14.68362 -13.94854 -13.71814 -13.60104 -13.46405 -12.72384 -12.60675 -12.52707 -12.34035 -12.07981 -11.98480 -11.55473 -11.31310 -11.00332 -10.97123 -10.79614 -10.72748 -10.43063 -10.23344 -9.98009 -9.72970 -9.45149 -8.96622 -8.68988 -8.41860 -7.98835 -6.75554 -5.86063 -3.24271 0.86667 1.49112 2.76298 3.34975 3.42941 3.45203 4.10285 4.29646 4.45610 4.48615 4.75909 5.06304 5.08689 5.30492 5.37408 5.40645 5.48705 5.52098 5.61633 5.75284 5.88787 5.92228 5.99376 6.07530 6.14456 6.25099 6.32227 6.40311 6.46653 6.52277 6.53323 6.58575 6.65562 6.71303 6.79936 6.86530 7.09321 7.23460 7.55714 7.75667 8.08728 8.36695 9.13744 9.77923 10.33317 11.22892 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.030369 B = 0.005581 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.759834 B = 5015.946745 C = 5433.085734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.204 3.796 3 N -0.502 5.502 4 C 0.069 3.931 5 C -0.094 4.094 6 C -0.119 4.119 7 C -0.126 4.126 8 C -0.085 4.085 9 C -0.123 4.123 10 C -0.042 4.042 11 C -0.110 4.110 12 C 0.156 3.844 13 N -0.589 5.589 14 C -0.254 4.254 15 H 0.066 0.934 16 C 0.005 3.995 17 N -0.899 5.899 18 Si 0.898 3.102 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.132 3.868 23 C -0.102 4.102 24 H 0.082 0.918 25 H 0.126 0.874 26 H 0.080 0.920 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.038 0.962 35 H 0.255 0.745 36 H 0.059 0.941 37 H 0.035 0.965 38 H 0.067 0.933 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.784 7.641 3.305 12.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.023 3.977 3 N -0.210 5.210 4 C -0.034 4.034 5 C -0.113 4.113 6 C -0.137 4.137 7 C -0.144 4.144 8 C -0.104 4.104 9 C -0.125 4.125 10 C -0.044 4.044 11 C -0.150 4.150 12 C 0.031 3.969 13 N -0.312 5.312 14 C -0.384 4.384 15 H 0.084 0.916 16 C -0.194 4.194 17 N -0.543 5.543 18 Si 0.728 3.272 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.006 3.994 23 C -0.142 4.142 24 H 0.101 0.899 25 H 0.144 0.856 26 H 0.098 0.902 27 H 0.140 0.860 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.139 0.861 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.086 0.914 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.668 8.619 3.162 13.332 hybrid contribution 0.455 -1.640 -0.269 1.723 sum 10.123 6.980 2.893 12.631 Atomic orbital electron populations 1.21277 0.86160 1.07157 1.02858 1.25552 0.96797 0.89233 0.86074 1.68851 1.01373 1.34099 1.16629 1.19725 0.91133 0.92378 1.00129 1.20509 0.90275 0.99221 1.01254 1.20867 0.96374 0.95192 1.01309 1.21118 0.98233 0.93483 1.01566 1.20192 0.90553 0.99929 0.99678 1.21216 0.95184 0.95619 1.00494 1.19842 0.88877 0.96043 0.99645 1.21965 1.02757 0.97497 0.92800 1.21130 0.88607 0.96457 0.90707 1.44051 1.75076 1.12953 0.99143 1.19139 1.26967 0.87126 1.05146 0.91606 1.24934 0.96873 0.97620 0.99945 1.70040 1.33327 1.32808 1.18152 0.86386 0.77932 0.85734 0.77177 1.21328 1.21578 1.20634 1.21225 0.91710 0.95945 0.90532 1.21776 1.01192 0.97894 0.93365 0.89938 0.85579 0.90194 0.85990 0.85786 0.85800 0.86057 0.93146 0.91720 0.89042 0.94450 0.93545 0.92268 0.94758 0.91411 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.91 7.72 36.00 0.28 -1.63 16 2 C 0.20 3.63 6.11 -78.47 -0.48 3.15 16 3 N -0.50 -9.27 10.95 -4.45 -0.05 -9.32 16 4 C 0.07 1.21 7.10 -84.44 -0.60 0.61 16 5 C -0.09 -1.38 10.10 -39.11 -0.39 -1.77 16 6 C -0.12 -1.47 10.00 -39.68 -0.40 -1.87 16 7 C -0.13 -1.58 10.07 -39.43 -0.40 -1.98 16 8 C -0.09 -1.26 10.02 -39.83 -0.40 -1.66 16 9 C -0.12 -2.11 5.08 -104.36 -0.53 -2.64 16 10 C -0.04 -0.74 0.66 -157.11 -0.10 -0.85 16 11 C -0.11 -2.12 4.96 -26.86 -0.13 -2.25 16 12 C 0.16 3.46 4.67 -3.66 -0.02 3.44 16 13 N -0.59 -13.57 2.82 -172.21 -0.49 -14.06 16 14 C -0.25 -6.57 9.57 -15.06 -0.14 -6.72 16 15 H 0.07 1.68 7.90 -52.48 -0.41 1.27 16 16 C 0.01 0.13 4.83 -17.43 -0.08 0.05 16 17 N -0.90 -24.63 11.29 55.49 0.63 -24.00 16 18 Si 0.90 20.87 29.60 -169.99 -5.03 15.84 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 C 0.13 2.56 5.83 -3.66 -0.02 2.54 16 23 C -0.10 -1.80 4.95 -26.84 -0.13 -1.93 16 24 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.13 2.33 3.15 -51.93 -0.16 2.16 16 26 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 28 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 29 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.09 2.31 6.00 -51.93 -0.31 1.99 16 34 H 0.04 0.83 4.95 -51.93 -0.26 0.57 16 35 H 0.25 6.80 8.31 -40.82 -0.34 6.47 16 36 H 0.06 1.13 7.92 -51.93 -0.41 0.72 16 37 H 0.03 0.64 5.00 -51.93 -0.26 0.38 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 301.99 15.07 4.55 4.55 Total: -1.00 -28.54 301.99 -9.13 -37.67 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.18 Total: 2.83 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -3.56 Total: -13.51 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.09 Total: -47.38 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.54 -9.13 -37.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602858890.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.929 kcal (2) G-P(sol) polarization free energy of solvation -28.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds