Wall clock time and date at job start Mon Mar 30 2020 00:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.28638 * 126.24822 * 2 1 4 4 C 1.36794 * 113.98842 * 180.02562 * 3 2 1 5 5 C 1.39881 * 131.35963 * 180.02562 * 4 3 2 6 6 C 1.37834 * 120.05233 * 180.02562 * 5 4 3 7 7 C 1.38369 * 120.52467 * 0.02562 * 6 5 4 8 8 C 1.38531 * 119.92569 * 0.23469 * 7 6 5 9 9 C 1.37257 * 119.91395 * 359.49638 * 8 7 6 10 10 C 1.50762 * 134.17731 * 180.23807 * 9 8 7 11 11 C 1.52477 * 110.67161 * 298.76681 * 10 9 8 12 12 C 1.53276 * 109.41778 * 183.04882 * 11 10 9 13 13 N 1.46931 * 108.73648 * 306.21866 * 12 11 10 14 14 C 1.36939 * 120.59322 * 234.10206 * 13 12 11 15 15 H 1.08004 * 119.99577 * 153.80922 * 14 13 12 16 16 C 1.38810 * 120.00312 * 333.81971 * 14 13 12 17 17 N 1.31621 * 119.99629 * 339.23367 * 16 14 13 18 18 Si 1.86793 * 120.00347 * 159.23567 * 16 14 13 19 19 H 1.48498 * 109.47204 * 85.77563 * 18 16 14 20 20 H 1.48497 * 109.47395 * 205.77462 * 18 16 14 21 21 H 1.48497 * 109.46976 * 325.77654 * 18 16 14 22 22 C 1.46931 * 118.81168 * 54.12734 * 13 12 11 23 23 C 1.52508 * 110.57543 * 61.98822 * 10 9 8 24 24 H 1.09000 * 109.47607 * 58.87165 * 1 2 3 25 25 H 1.08996 * 109.47700 * 178.87426 * 1 2 3 26 26 H 1.09005 * 109.47215 * 298.87020 * 1 2 3 27 27 H 1.08001 * 119.96954 * 0.02562 * 5 4 3 28 28 H 1.08005 * 119.73749 * 180.02562 * 6 5 4 29 29 H 1.07993 * 120.03105 * 179.97438 * 7 6 5 30 30 H 1.07993 * 120.03929 * 179.73142 * 8 7 6 31 31 H 1.09005 * 109.48194 * 303.03766 * 11 10 9 32 32 H 1.09002 * 109.47673 * 63.07032 * 11 10 9 33 33 H 1.08997 * 109.59394 * 186.43841 * 12 11 10 34 34 H 1.09004 * 109.58598 * 65.98767 * 12 11 10 35 35 H 0.97002 * 120.00203 * 180.02562 * 17 16 14 36 36 H 1.08994 * 109.59536 * 186.08700 * 22 13 12 37 37 H 1.08993 * 109.59771 * 65.62432 * 22 13 12 38 38 H 1.09003 * 109.48698 * 296.85422 * 23 10 9 39 39 H 1.08998 * 109.48474 * 56.89236 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2676 1.0374 0.0000 4 6 3.6043 0.7469 -0.0006 5 6 4.7305 1.5766 -0.0003 6 6 5.9939 1.0256 -0.0015 7 6 6.1615 -0.3479 -0.0036 8 6 5.0534 -1.1794 -0.0094 9 6 3.7919 -0.6387 -0.0025 10 6 2.4002 -1.2185 -0.0011 11 6 2.1634 -2.0528 -1.2552 12 6 0.7187 -2.5647 -1.2615 13 7 0.4603 -3.2641 0.0046 14 6 -0.0169 -4.5477 0.0069 15 1 0.1834 -5.1967 0.8466 16 6 -0.7577 -5.0147 -1.0701 17 7 -1.3482 -4.1630 -1.8814 18 14 -0.9168 -6.8519 -1.3679 19 1 -2.0443 -7.3879 -0.5637 20 1 -1.1752 -7.0993 -2.8091 21 1 0.3427 -7.5291 -0.9674 22 6 0.7225 -2.5615 1.2681 23 6 2.1674 -2.0502 1.2559 24 1 -0.3634 0.5312 -0.8797 25 1 -0.3634 -1.0274 -0.0202 26 1 -0.3634 0.4962 0.9000 27 1 4.6099 2.6499 0.0009 28 1 6.8599 1.6709 -0.0009 29 1 7.1550 -0.7712 -0.0050 30 1 5.1821 -2.2516 -0.0154 31 1 2.3351 -1.4379 -2.1387 32 1 2.8492 -2.9000 -1.2630 33 1 0.5784 -3.2532 -2.0947 34 1 0.0332 -1.7229 -1.3605 35 1 -1.8662 -4.4893 -2.6338 36 1 0.5847 -3.2479 2.1034 37 1 0.0377 -1.7194 1.3671 38 1 2.8529 -2.8977 1.2633 39 1 2.3422 -1.4334 2.1375 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602858890.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:29 Heat of formation + Delta-G solvation = 80.466928 kcal Electronic energy + Delta-G solvation = -21155.869277 eV Core-core repulsion = 18257.226435 eV Total energy + Delta-G solvation = -2898.642842 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.69606 -39.13093 -37.41488 -34.78934 -32.92538 -32.07368 -31.70289 -30.96120 -28.72858 -27.33498 -24.79113 -23.95442 -23.25673 -22.12251 -21.47770 -19.89496 -18.68685 -17.21103 -16.74082 -16.54262 -16.17483 -16.12718 -15.57878 -15.27024 -15.13028 -14.79822 -14.12805 -13.98576 -13.79079 -13.76428 -13.48988 -13.19733 -13.14267 -13.05520 -12.56332 -12.41850 -12.32690 -12.24633 -12.05344 -11.87684 -11.61540 -11.39540 -11.01404 -10.51073 -10.23115 -9.80572 -9.16700 -8.64045 -7.84792 -5.24112 -0.33420 0.38795 1.49078 1.52389 1.56201 1.60050 2.54840 2.94480 3.07058 3.21623 3.28686 3.49248 3.66954 3.91758 4.01621 4.06289 4.17308 4.41133 4.44656 4.48493 4.57093 4.59396 4.66984 4.69653 4.83205 4.85606 4.87870 4.98934 5.01668 5.06402 5.19261 5.27204 5.36008 5.41949 5.50098 5.53241 5.64101 5.70507 5.79016 5.97958 6.41454 6.78914 7.18173 7.89098 8.40699 9.21908 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.030369 B = 0.005581 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.759834 B = 5015.946745 C = 5433.085734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.189 3.811 3 N -0.511 5.511 4 C 0.032 3.968 5 C -0.099 4.099 6 C -0.109 4.109 7 C -0.112 4.112 8 C -0.099 4.099 9 C -0.141 4.141 10 C -0.039 4.039 11 C -0.096 4.096 12 C 0.165 3.835 13 N -0.601 5.601 14 C -0.261 4.261 15 H 0.066 0.934 16 C -0.042 4.042 17 N -0.926 5.926 18 Si 0.956 3.044 19 H -0.284 1.284 20 H -0.295 1.295 21 H -0.276 1.276 22 C 0.130 3.870 23 C -0.090 4.090 24 H 0.088 0.912 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.135 0.865 28 H 0.164 0.836 29 H 0.161 0.839 30 H 0.128 0.872 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.035 0.965 35 H 0.250 0.750 36 H 0.059 0.941 37 H 0.045 0.955 38 H 0.063 0.937 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.196 8.390 4.101 15.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.008 3.992 3 N -0.219 5.219 4 C -0.070 4.070 5 C -0.118 4.118 6 C -0.127 4.127 7 C -0.130 4.130 8 C -0.117 4.117 9 C -0.143 4.143 10 C -0.042 4.042 11 C -0.136 4.136 12 C 0.040 3.960 13 N -0.325 5.325 14 C -0.391 4.391 15 H 0.083 0.917 16 C -0.238 4.238 17 N -0.572 5.572 18 Si 0.785 3.215 19 H -0.211 1.211 20 H -0.222 1.222 21 H -0.202 1.202 22 C 0.005 3.995 23 C -0.130 4.130 24 H 0.107 0.893 25 H 0.121 0.879 26 H 0.117 0.883 27 H 0.153 0.847 28 H 0.182 0.818 29 H 0.178 0.822 30 H 0.146 0.854 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.102 9.378 3.981 15.819 hybrid contribution -0.167 -1.793 -0.482 1.864 sum 11.935 7.585 3.499 14.568 Atomic orbital electron populations 1.21166 0.85630 1.05851 1.04146 1.25664 0.97203 0.89146 0.87208 1.68790 1.02346 1.34403 1.16387 1.20051 0.91269 0.93207 1.02509 1.20873 0.90421 0.99880 1.00604 1.21344 0.96658 0.95732 0.99016 1.21585 0.99084 0.93468 0.98861 1.20474 0.90489 1.00828 0.99944 1.21231 0.95289 0.95557 1.02221 1.19743 0.90205 0.95797 0.98442 1.21715 1.00384 0.97438 0.94040 1.20912 0.90414 0.95351 0.89329 1.44185 1.75087 1.12640 1.00540 1.19423 1.26204 0.88479 1.05011 0.91672 1.25563 0.97230 1.00885 1.00150 1.70164 1.34363 1.34125 1.18553 0.85470 0.77842 0.81730 0.76460 1.21104 1.22159 1.20159 1.21346 0.93226 0.96017 0.88900 1.21607 0.99465 0.97851 0.94048 0.89318 0.87920 0.88276 0.84696 0.81843 0.82172 0.85401 0.93195 0.92368 0.92599 0.94708 0.94111 0.92244 0.93708 0.91786 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.61 7.72 71.23 0.55 -3.06 16 2 C 0.19 6.68 6.11 46.56 0.28 6.96 16 3 N -0.51 -18.56 10.95 -168.00 -1.84 -20.40 16 4 C 0.03 1.07 7.10 39.15 0.28 1.35 16 5 C -0.10 -2.64 10.10 22.57 0.23 -2.41 16 6 C -0.11 -2.23 10.00 22.20 0.22 -2.01 16 7 C -0.11 -2.35 10.07 22.37 0.23 -2.13 16 8 C -0.10 -2.70 10.02 22.11 0.22 -2.48 16 9 C -0.14 -4.65 5.08 -19.69 -0.10 -4.75 16 10 C -0.04 -1.40 0.66 -53.87 -0.04 -1.43 16 11 C -0.10 -3.74 4.96 30.51 0.15 -3.59 16 12 C 0.17 7.54 4.67 86.39 0.40 7.95 16 13 N -0.60 -28.18 2.82 -698.76 -1.97 -30.16 16 14 C -0.26 -13.68 9.57 84.03 0.80 -12.88 16 15 H 0.07 3.35 7.90 -2.91 -0.02 3.33 16 16 C -0.04 -2.26 4.83 84.86 0.41 -1.85 16 17 N -0.93 -52.19 11.29 21.65 0.24 -51.95 16 18 Si 0.96 43.57 29.60 68.60 2.03 45.60 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 20 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 22 C 0.13 5.06 5.83 86.39 0.50 5.56 16 23 C -0.09 -3.11 4.95 30.52 0.15 -2.96 16 24 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 25 H 0.10 3.85 3.15 -2.39 -0.01 3.85 16 26 H 0.10 2.75 8.14 -2.38 -0.02 2.73 16 27 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 28 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 29 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 30 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 31 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 32 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.06 2.94 6.00 -2.39 -0.01 2.93 16 34 H 0.04 1.60 4.95 -2.38 -0.01 1.59 16 35 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 36 H 0.06 2.27 7.92 -2.39 -0.02 2.25 16 37 H 0.05 1.67 5.00 -2.39 -0.01 1.66 16 38 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -61.94 301.99 3.81 -58.13 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 1.05 Total: 16.52 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 4.30 Total: -17.74 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -3.57 Total: -102.51 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -61.94 3.81 -58.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602858890.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.594 kcal (2) G-P(sol) polarization free energy of solvation -61.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds