Wall clock time and date at job start Mon Mar 30 2020 01:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47407 * 2 1 4 4 H 1.08999 * 109.47019 * 56.79677 * 3 2 1 5 5 C 1.50698 * 109.47422 * 176.79525 * 3 2 1 6 6 H 1.07999 * 119.99717 * 119.99674 * 5 3 2 7 7 C 1.37871 * 120.00374 * 300.00536 * 5 3 2 8 8 N 1.31520 * 120.00095 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00380 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47293 * 59.99241 * 9 7 5 11 11 H 1.48498 * 109.47343 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46721 * 299.99338 * 9 7 5 13 13 N 1.46899 * 109.46962 * 296.79752 * 3 2 1 14 14 C 1.46907 * 110.99806 * 107.45823 * 13 3 2 15 15 C 1.50695 * 109.46789 * 85.65670 * 14 13 3 16 16 N 1.31268 * 120.05997 * 264.34149 * 15 14 13 17 17 C 1.32578 * 122.77978 * 180.02562 * 16 15 14 18 18 C 1.36222 * 121.87015 * 359.42496 * 17 16 15 19 19 C 1.40648 * 118.66221 * 0.84689 * 18 17 16 20 20 C 1.40245 * 122.22925 * 179.12846 * 19 18 17 21 21 C 1.36206 * 119.47928 * 180.02562 * 20 19 18 22 22 C 1.39384 * 121.02665 * 359.97438 * 21 20 19 23 23 C 1.36166 * 121.08783 * 0.02562 * 22 21 20 24 24 C 1.40383 * 119.51448 * 0.25888 * 23 22 21 25 25 H 1.08994 * 109.46997 * 305.49457 * 1 2 3 26 26 H 1.08993 * 109.47250 * 65.49859 * 1 2 3 27 27 H 1.09004 * 109.47105 * 185.49639 * 1 2 3 28 28 H 1.09005 * 109.47117 * 239.99825 * 2 1 3 29 29 H 1.09006 * 109.47375 * 120.00284 * 2 1 3 30 30 H 0.96991 * 120.00492 * 180.02562 * 8 7 5 31 31 H 1.00895 * 111.00261 * 231.41260 * 13 3 2 32 32 H 1.09000 * 109.47326 * 325.65709 * 14 13 3 33 33 H 1.09002 * 109.46572 * 205.65442 * 14 13 3 34 34 H 1.08000 * 119.06295 * 180.02562 * 17 16 15 35 35 H 1.08002 * 120.65947 * 180.02562 * 18 17 16 36 36 H 1.07994 * 120.25876 * 0.04648 * 20 19 18 37 37 H 1.07997 * 119.49059 * 180.02562 * 21 20 19 38 38 H 1.08004 * 119.45483 * 180.02562 * 22 21 20 39 39 H 1.08004 * 120.23874 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6306 1.9726 0.8599 5 6 3.5449 1.4432 0.0794 6 1 4.1271 1.8959 -0.7096 7 6 4.1786 0.8659 1.1592 8 7 3.4697 0.3149 2.1203 9 14 6.0440 0.8674 1.2580 10 1 6.5385 2.2677 1.2583 11 1 6.4741 0.1907 2.5079 12 1 6.6022 0.1456 0.0865 13 7 1.6146 2.1123 -1.2362 14 6 0.5487 3.0867 -0.9670 15 6 1.1617 4.4019 -0.5599 16 7 1.3038 4.6955 0.7116 17 6 1.8350 5.8359 1.1299 18 6 2.2834 6.7826 0.2590 19 6 2.1591 6.5426 -1.1212 20 6 2.5790 7.4729 -2.0830 21 6 2.4315 7.1826 -3.4056 22 6 1.8704 5.9752 -3.8179 23 6 1.4518 5.0488 -2.9120 24 6 1.5820 5.3151 -1.5399 25 1 -0.3633 0.5967 0.8367 26 1 -0.3633 0.4262 -0.9351 27 1 -0.3633 -1.0230 0.0984 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.9155 -0.0910 2.8801 31 1 2.3973 2.5508 -1.6977 32 1 -0.0865 2.7173 -0.1620 33 1 -0.0501 3.2280 -1.8668 34 1 1.9236 6.0153 2.1912 35 1 2.7133 7.7048 0.6214 36 1 3.0161 8.4120 -1.7773 37 1 2.7552 7.8988 -4.1463 38 1 1.7659 5.7711 -4.8733 39 1 1.0185 4.1178 -3.2468 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613044437.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:43 Heat of formation + Delta-G solvation = 28.050810 kcal Electronic energy + Delta-G solvation = -20511.455962 eV Core-core repulsion = 17610.540187 eV Total energy + Delta-G solvation = -2900.915775 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.82482 -38.50750 -37.85575 -35.16190 -33.70123 -32.46260 -31.86614 -30.54496 -28.95033 -26.35207 -24.77039 -24.41653 -24.07886 -22.01519 -21.26876 -18.98404 -18.49646 -18.34260 -17.21953 -16.83697 -15.94266 -15.90658 -15.67768 -15.22445 -14.88670 -14.83214 -14.55969 -14.29241 -13.88278 -13.66672 -13.33726 -13.14866 -13.00944 -12.74440 -12.69312 -12.62960 -12.61681 -12.15149 -11.90330 -11.50788 -11.34561 -10.99616 -10.85891 -10.50435 -10.35074 -9.98485 -9.19985 -8.83732 -8.10241 -6.24879 -0.53310 0.01911 1.01156 1.35255 1.36354 1.43926 2.19241 2.38417 3.12930 3.16694 3.38459 3.62481 3.75060 3.87884 3.93469 4.06952 4.29955 4.37243 4.49534 4.51067 4.61889 4.70049 4.76568 4.83384 4.90186 4.93715 4.98571 5.15643 5.19988 5.22899 5.38498 5.51587 5.54107 5.54477 5.67614 5.71459 5.76245 5.99607 6.01571 6.28433 6.39463 6.74443 7.01188 7.18173 7.43414 8.92689 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.016810 B = 0.006367 C = 0.005639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.288795 B = 4396.684345 C = 4964.158804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.101 4.101 3 C 0.223 3.777 4 H -0.007 1.007 5 C -0.543 4.543 6 H 0.046 0.954 7 C 0.019 3.981 8 N -0.910 5.910 9 Si 0.949 3.051 10 H -0.280 1.280 11 H -0.281 1.281 12 H -0.268 1.268 13 N -0.661 5.661 14 C 0.108 3.892 15 C 0.132 3.868 16 N -0.514 5.514 17 C 0.053 3.947 18 C -0.161 4.161 19 C -0.048 4.048 20 C -0.121 4.121 21 C -0.096 4.096 22 C -0.118 4.118 23 C -0.099 4.099 24 C -0.121 4.121 25 H 0.028 0.972 26 H 0.060 0.940 27 H 0.046 0.954 28 H 0.029 0.971 29 H 0.056 0.944 30 H 0.261 0.739 31 H 0.330 0.670 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.158 0.842 35 H 0.166 0.834 36 H 0.155 0.845 37 H 0.161 0.839 38 H 0.156 0.844 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.720 14.366 -10.581 18.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.140 4.140 3 C 0.114 3.886 4 H 0.011 0.989 5 C -0.582 4.582 6 H 0.065 0.935 7 C -0.181 4.181 8 N -0.549 5.549 9 Si 0.775 3.225 10 H -0.205 1.205 11 H -0.206 1.206 12 H -0.193 1.193 13 N -0.289 5.289 14 C -0.022 4.022 15 C -0.022 4.022 16 N -0.224 5.224 17 C -0.090 4.090 18 C -0.180 4.180 19 C -0.053 4.053 20 C -0.139 4.139 21 C -0.115 4.115 22 C -0.136 4.136 23 C -0.118 4.118 24 C -0.124 4.124 25 H 0.047 0.953 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.148 0.852 32 H 0.086 0.914 33 H 0.127 0.873 34 H 0.175 0.825 35 H 0.183 0.817 36 H 0.172 0.828 37 H 0.178 0.822 38 H 0.174 0.826 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.383 13.223 -9.838 17.054 hybrid contribution 1.866 0.984 0.730 2.232 sum -2.517 14.207 -9.108 17.063 Atomic orbital electron populations 1.21623 0.96539 0.99883 1.00456 1.21385 0.94245 0.98569 0.99810 1.18988 0.92297 0.91379 0.85913 0.98881 1.21753 0.93196 1.37420 1.05843 0.93538 1.25607 1.02177 0.94967 0.95330 1.70013 1.36436 1.38437 1.10030 0.85755 0.81087 0.77964 0.77677 1.20540 1.20629 1.19340 1.61104 1.13745 1.28431 1.25633 1.21282 0.94787 0.84901 1.01218 1.22953 0.94455 0.96526 0.88261 1.67284 1.15464 1.20286 1.19334 1.22504 0.95870 0.89265 1.01341 1.22158 1.01522 1.01826 0.92535 1.18564 0.97536 0.94383 0.94866 1.21259 1.00482 0.99294 0.92832 1.21413 0.96574 0.97268 0.96222 1.21332 0.97641 0.93491 1.01087 1.21302 0.99176 1.00659 0.90700 1.19085 1.02064 0.95361 0.95868 0.95269 0.92064 0.93502 0.95198 0.92510 0.93006 0.85245 0.91422 0.87321 0.82480 0.81664 0.82753 0.82171 0.82593 0.83956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.28 8.88 71.98 0.64 -4.64 16 2 C -0.10 -5.08 5.44 30.59 0.17 -4.91 16 3 C 0.22 11.58 2.01 44.17 0.09 11.67 16 4 H -0.01 -0.39 7.37 -2.39 -0.02 -0.41 16 5 C -0.54 -30.99 8.60 25.60 0.22 -30.77 16 6 H 0.05 2.63 7.36 -2.91 -0.02 2.61 16 7 C 0.02 1.09 5.30 84.65 0.45 1.53 16 8 N -0.91 -54.34 11.30 21.45 0.24 -54.10 16 9 Si 0.95 45.33 29.54 68.60 2.03 47.36 16 10 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 13 N -0.66 -28.12 6.10 -499.46 -3.05 -31.17 16 14 C 0.11 4.03 4.99 85.55 0.43 4.45 16 15 C 0.13 5.05 6.04 43.17 0.26 5.31 16 16 N -0.51 -21.70 10.21 -183.62 -1.87 -23.57 16 17 C 0.05 1.88 11.07 84.11 0.93 2.81 16 18 C -0.16 -4.65 9.88 22.39 0.22 -4.43 16 19 C -0.05 -1.41 5.75 -21.29 -0.12 -1.54 16 20 C -0.12 -2.56 9.81 22.28 0.22 -2.34 16 21 C -0.10 -1.69 9.95 22.07 0.22 -1.47 16 22 C -0.12 -2.30 9.94 22.06 0.22 -2.08 16 23 C -0.10 -2.55 9.30 22.31 0.21 -2.35 16 24 C -0.12 -3.94 5.74 -21.31 -0.12 -4.06 16 25 H 0.03 1.22 8.05 -2.39 -0.02 1.20 16 26 H 0.06 2.30 7.56 -2.39 -0.02 2.28 16 27 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 28 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.06 3.21 5.99 -2.38 -0.01 3.20 16 30 H 0.26 14.85 8.31 -92.72 -0.77 14.08 16 31 H 0.33 14.27 7.56 -89.70 -0.68 13.60 16 32 H 0.07 2.75 6.90 -2.39 -0.02 2.73 16 33 H 0.11 3.24 6.79 -2.39 -0.02 3.22 16 34 H 0.16 4.84 8.06 -2.91 -0.02 4.81 16 35 H 0.17 3.41 8.06 -2.91 -0.02 3.39 16 36 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 37 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 38 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 39 H 0.14 3.39 6.59 -2.91 -0.02 3.37 16 Total: -1.00 -69.47 320.24 1.74 -67.73 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.37 Total: 26.57 kcal Atomic # 6 Polarization: -36.83 SS G_CDS: 4.02 Total: -32.81 kcal Atomic # 7 Polarization: -104.17 SS G_CDS: -4.68 Total: -108.85 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -69.47 1.74 -67.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613044437.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.776 kcal (2) G-P(sol) polarization free energy of solvation -69.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds