Wall clock time and date at job start Mon Mar 30 2020 01:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32564 * 1 3 3 C 1.50704 * 119.99888 * 2 1 4 4 C 1.47825 * 120.00184 * 179.97438 * 2 1 3 5 5 C 1.39594 * 120.10556 * 245.02944 * 4 2 1 6 6 C 1.37998 * 120.00655 * 179.97438 * 5 4 2 7 7 C 1.38236 * 120.22089 * 359.73907 * 6 5 4 8 8 C 1.38988 * 120.20713 * 0.51648 * 7 6 5 9 9 N 1.39700 * 119.99971 * 179.76361 * 8 7 6 10 10 C 1.46500 * 120.00134 * 359.72049 * 9 8 7 11 11 C 1.52996 * 109.46949 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47753 * 305.00252 * 11 10 9 13 13 C 1.47204 * 109.47042 * 65.00020 * 11 10 9 14 14 N 7.81278 * 110.22863 * 228.33510 * 2 1 3 15 15 C 1.52996 * 109.47153 * 184.99976 * 11 10 9 16 16 C 1.50702 * 109.47159 * 175.00123 * 15 11 10 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 11 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 11 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 C 1.38683 * 119.99337 * 359.48439 * 8 7 6 25 25 H 1.07997 * 119.99712 * 180.02562 * 1 2 3 26 26 H 1.08003 * 120.00206 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.46519 * 269.99559 * 3 2 1 28 28 H 1.09003 * 109.46901 * 29.99256 * 3 2 1 29 29 H 1.08996 * 109.47047 * 149.99507 * 3 2 1 30 30 H 1.08004 * 119.99426 * 359.95546 * 5 4 2 31 31 H 1.07997 * 119.88978 * 179.97438 * 6 5 4 32 32 H 1.07997 * 119.89385 * 180.25257 * 7 6 5 33 33 H 0.97002 * 119.99262 * 179.72227 * 9 8 7 34 34 H 1.08997 * 109.46786 * 59.99952 * 10 9 8 35 35 H 1.08996 * 109.47381 * 300.00150 * 10 9 8 36 36 H 1.09004 * 109.47066 * 55.00326 * 15 11 10 37 37 H 1.08994 * 109.47405 * 295.00156 * 15 11 10 38 38 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 39 39 H 1.08002 * 120.11009 * 180.22904 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0791 1.3052 0.0000 4 6 2.0648 -1.2802 0.0006 5 6 2.8564 -1.6311 1.0955 6 6 3.5452 -2.8270 1.0941 7 6 3.4502 -3.6833 0.0131 8 6 2.6689 -3.3405 -1.0841 9 7 2.5800 -4.2070 -2.1763 10 6 3.3151 -5.4741 -2.1679 11 6 3.0466 -6.2282 -3.4717 12 1 1.9718 -6.3502 -3.6063 13 6 3.5991 -5.4649 -4.6027 14 7 4.0270 -4.8734 -5.4765 15 6 3.7124 -7.6043 -3.4114 16 6 3.3465 -8.3938 -4.6419 17 1 2.7037 -7.9575 -5.3921 18 6 3.8374 -9.6709 -4.8129 19 7 4.6205 -10.2020 -3.8995 20 14 3.3901 -10.6465 -6.3417 21 1 3.8577 -9.9179 -7.5483 22 1 4.0403 -11.9804 -6.2855 23 1 1.9163 -10.8170 -6.4066 24 6 1.9730 -2.1410 -1.0920 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 2.2608 1.6197 -1.0277 28 1 1.4899 2.0648 0.5137 29 1 3.0315 1.1748 0.5139 30 1 2.9301 -0.9665 1.9436 31 1 4.1574 -3.0964 1.9420 32 1 3.9883 -4.6197 0.0193 33 1 2.0314 -3.9695 -2.9403 34 1 2.9855 -6.0798 -1.3238 35 1 4.3827 -5.2742 -2.0766 36 1 3.3691 -8.1355 -2.5236 37 1 4.7946 -7.4827 -3.3663 38 1 4.9656 -11.1006 -4.0197 39 1 1.3623 -1.8744 -1.9420 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899916487.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:22 Heat of formation + Delta-G solvation = 49.334713 kcal Electronic energy + Delta-G solvation = -18917.834597 eV Core-core repulsion = 16017.841761 eV Total energy + Delta-G solvation = -2899.992836 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.53550 -37.40486 -35.79324 -34.50684 -33.55341 -31.87080 -30.19991 -28.85412 -27.38045 -26.43259 -24.04250 -22.62052 -21.93145 -21.61666 -18.84541 -17.33643 -16.64577 -16.58163 -15.97760 -15.37784 -14.89403 -14.61202 -14.20730 -14.09517 -13.72987 -13.57450 -13.22373 -13.09018 -13.01338 -12.48104 -12.18361 -12.15670 -11.94365 -11.79823 -11.45711 -11.34198 -11.15412 -10.89190 -10.75506 -10.64259 -10.41843 -9.96717 -9.71163 -9.38618 -9.35121 -8.58980 -8.52352 -7.30210 -6.16763 -4.20837 1.30360 1.67942 2.11118 3.26447 3.31273 3.33837 3.42178 3.47121 3.60696 3.92672 4.34906 4.57363 4.63083 4.91249 4.99141 5.21296 5.24250 5.26945 5.29504 5.39358 5.42336 5.56651 5.60449 5.63934 5.73800 5.79815 5.93516 6.02966 6.20071 6.30874 6.34368 6.44726 6.49374 6.58921 6.72904 6.92758 7.31516 7.40529 7.43905 7.77092 7.81307 8.13036 8.28818 8.82891 9.45135 10.93975 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.034817 B = 0.003145 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.020406 B = 8901.456350 C = 9271.087939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.086 4.086 3 C -0.115 4.115 4 C -0.011 4.011 5 C -0.174 4.174 6 C -0.071 4.071 7 C -0.197 4.197 8 C 0.225 3.775 9 N -0.747 5.747 10 C 0.131 3.869 11 C -0.002 4.002 12 H 0.108 0.892 13 C 0.237 3.763 14 N -0.467 5.467 15 C 0.034 3.966 16 C -0.531 4.531 17 H 0.056 0.944 18 C 0.064 3.936 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.188 4.188 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.398 0.602 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.042 0.958 37 H 0.028 0.972 38 H 0.264 0.736 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.063 16.653 11.551 21.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.086 4.086 3 C -0.171 4.171 4 C -0.011 4.011 5 C -0.195 4.195 6 C -0.089 4.089 7 C -0.220 4.220 8 C 0.121 3.879 9 N -0.376 5.376 10 C 0.006 3.994 11 C -0.024 4.024 12 H 0.126 0.874 13 C -0.080 4.080 14 N -0.143 5.143 15 C -0.004 4.004 16 C -0.569 4.569 17 H 0.075 0.925 18 C -0.139 4.139 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.211 4.211 25 H 0.118 0.882 26 H 0.119 0.881 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.132 0.868 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.233 0.767 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.190 17.183 10.282 20.686 hybrid contribution -0.544 -0.900 -0.910 1.390 sum -5.734 16.284 9.372 19.644 Atomic orbital electron populations 1.24096 0.94643 1.01959 1.01556 1.20555 0.94510 0.93441 1.00113 1.20836 1.00244 0.93773 1.02284 1.18607 0.95974 0.92805 0.93760 1.20844 1.01450 0.98410 0.98747 1.20795 0.97406 0.93456 0.97292 1.20770 1.04696 1.02105 0.94437 1.17742 0.93182 0.89284 0.87701 1.44922 1.53682 1.20122 1.18834 1.21537 0.96618 0.83697 0.97558 1.19479 1.01808 0.95973 0.85147 0.87431 1.29227 0.92863 0.91779 0.94111 1.81160 1.09915 1.12230 1.11040 1.19149 0.96348 0.86031 0.98884 1.21065 1.31024 0.99477 1.05337 0.92541 1.24947 0.94734 0.97665 0.96518 1.69922 1.32787 1.15970 1.34113 0.86633 0.78815 0.79155 0.83361 1.20232 1.21101 1.20005 1.20619 1.05726 0.94759 0.99974 0.88198 0.88105 0.91305 0.91770 0.91567 0.86753 0.86222 0.85758 0.76734 0.90125 0.91617 0.93967 0.95318 0.92607 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.68 13.94 28.82 0.40 -1.28 16 2 C -0.09 -0.86 5.44 -102.61 -0.56 -1.42 16 3 C -0.11 -0.93 10.02 36.01 0.36 -0.57 16 4 C -0.01 -0.13 5.30 -105.04 -0.56 -0.68 16 5 C -0.17 -1.97 9.69 -39.16 -0.38 -2.35 16 6 C -0.07 -0.80 10.02 -39.67 -0.40 -1.20 16 7 C -0.20 -2.50 9.31 -39.30 -0.37 -2.86 16 8 C 0.23 2.98 6.65 -83.83 -0.56 2.42 16 9 N -0.75 -9.87 5.52 -58.67 -0.32 -10.19 16 10 C 0.13 1.85 4.27 -4.04 -0.02 1.83 16 11 C 0.00 -0.04 2.26 -93.41 -0.21 -0.25 16 12 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 13 C 0.24 4.64 13.46 -20.67 -0.28 4.36 16 14 N -0.47 -10.05 18.56 42.26 0.78 -9.27 16 15 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 16 C -0.53 -13.72 8.60 -34.44 -0.30 -14.01 16 17 H 0.06 1.45 7.59 -52.49 -0.40 1.05 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -24.94 13.29 55.43 0.74 -24.20 16 20 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 C -0.19 -2.37 9.56 -38.99 -0.37 -2.74 16 25 H 0.10 0.93 8.05 -52.49 -0.42 0.51 16 26 H 0.10 0.73 8.05 -52.48 -0.42 0.31 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.42 8.07 -51.93 -0.42 0.01 16 29 H 0.07 0.53 8.03 -51.93 -0.42 0.11 16 30 H 0.11 1.10 8.06 -52.48 -0.42 0.67 16 31 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.12 1.49 6.71 -52.49 -0.35 1.14 16 33 H 0.40 5.01 8.23 -40.82 -0.34 4.68 16 34 H 0.08 1.05 7.93 -51.93 -0.41 0.64 16 35 H 0.07 0.96 7.95 -51.93 -0.41 0.54 16 36 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 342.29 15.07 5.16 5.16 Total: -1.00 -29.36 342.29 -7.80 -37.16 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.69 Total: 1.92 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -3.45 Total: -16.48 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 1.20 Total: -43.66 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.36 -7.80 -37.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899916487.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.495 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds