Wall clock time and date at job start Mon Mar 30 2020 01:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47329 * 2 1 4 4 H 1.09000 * 109.47312 * 305.00077 * 3 2 1 5 5 F 1.39897 * 109.46937 * 65.00335 * 3 2 1 6 6 C 1.50706 * 109.46925 * 185.00035 * 3 2 1 7 7 O 1.21277 * 120.00092 * 315.00074 * 6 3 2 8 8 N 1.34773 * 119.99517 * 135.00231 * 6 3 2 9 9 C 1.47351 * 125.52889 * 359.69082 * 8 6 3 10 10 C 1.55158 * 104.79626 * 156.68383 * 9 8 6 11 11 C 1.54785 * 101.35882 * 37.54631 * 10 9 8 12 12 H 1.08996 * 113.40587 * 85.63567 * 11 10 9 13 13 C 1.53513 * 109.68902 * 212.75446 * 11 10 9 14 14 N 1.46650 * 107.05268 * 84.08686 * 13 11 10 15 15 C 1.36931 * 125.29268 * 197.40270 * 14 13 11 16 16 H 1.07999 * 119.99926 * 359.94605 * 15 14 13 17 17 C 1.38806 * 120.00538 * 179.97438 * 15 14 13 18 18 N 1.31618 * 119.99803 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00480 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46903 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46936 * 119.99867 * 19 17 15 22 22 H 1.48497 * 109.47365 * 240.00024 * 19 17 15 23 23 C 1.46500 * 109.42231 * 17.37885 * 14 13 11 24 24 C 1.47259 * 125.52094 * 179.97438 * 8 6 3 25 25 H 1.08999 * 111.94668 * 55.57214 * 24 8 6 26 26 H 1.09008 * 109.47032 * 59.99816 * 1 2 3 27 27 H 1.08998 * 109.46896 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46808 * 300.00103 * 1 2 3 29 29 H 1.09005 * 109.47098 * 240.00224 * 2 1 3 30 30 H 1.08999 * 109.47143 * 120.00442 * 2 1 3 31 31 H 1.08998 * 110.35347 * 275.63949 * 9 8 6 32 32 H 1.09000 * 110.34885 * 37.92047 * 9 8 6 33 33 H 1.08999 * 111.21973 * 279.46931 * 10 9 8 34 34 H 1.09001 * 110.96557 * 155.50811 * 10 9 8 35 35 H 1.09003 * 109.91888 * 324.73661 * 13 11 10 36 36 H 1.08996 * 109.92017 * 203.43288 * 13 11 10 37 37 H 0.97007 * 120.00301 * 180.02562 * 18 17 15 38 38 H 1.08999 * 109.70957 * 238.31944 * 23 14 13 39 39 H 1.08997 * 109.67082 * 117.75088 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 9 1.6700 2.0679 1.1954 6 6 3.5420 1.4442 -0.1238 7 8 4.2064 0.6809 0.5446 8 7 4.1467 2.2940 -0.9774 9 6 3.4612 3.2643 -1.8490 10 6 4.5262 4.3534 -2.1440 11 6 5.8099 3.4980 -2.2710 12 1 5.9630 3.0926 -3.2712 13 6 7.0172 4.2983 -1.7622 14 7 7.0608 4.1315 -0.3059 15 6 7.7577 4.9299 0.5613 16 1 8.3360 5.7605 0.1845 17 6 7.7213 4.6713 1.9246 18 7 7.0174 3.6584 2.3837 19 14 8.6726 5.7601 3.1075 20 1 9.3782 6.8212 2.3450 21 1 7.7310 6.3859 4.0703 22 1 9.6642 4.9390 3.8475 23 6 6.2425 2.9783 0.0771 24 6 5.5994 2.3991 -1.1944 25 1 6.0398 1.4422 -1.4743 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.1410 2.7835 -2.7733 32 1 2.6066 3.7006 -1.3319 33 1 4.6071 5.0601 -1.3181 34 1 4.3068 4.8705 -3.0782 35 1 6.8958 5.3524 -2.0118 36 1 7.9336 3.9115 -2.2078 37 1 6.9916 3.4779 3.3365 38 1 5.4640 3.2943 0.7715 39 1 6.8710 2.2228 0.5485 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076137852.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:34 Heat of formation + Delta-G solvation = -53.739061 kcal Electronic energy + Delta-G solvation = -21976.126877 eV Core-core repulsion = 18640.895202 eV Total energy + Delta-G solvation = -3335.231675 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.71313 -40.07334 -37.87575 -34.95015 -33.97564 -32.27241 -30.67611 -29.08823 -27.64734 -26.37806 -24.49039 -22.92933 -21.91101 -20.42959 -19.65790 -18.82249 -17.53885 -16.81437 -16.38854 -15.83863 -15.40020 -15.10412 -14.49803 -14.05986 -13.86690 -13.70174 -13.41779 -12.99015 -12.91255 -12.69064 -12.27553 -12.15631 -11.90804 -11.74525 -11.44752 -11.20349 -11.17172 -10.99012 -10.94503 -10.77034 -10.47365 -10.18498 -10.04549 -9.85615 -9.69463 -9.37366 -8.56237 -8.26036 -6.78734 -5.64168 -3.01390 2.76319 3.11615 3.43313 3.47651 3.51358 4.35630 4.46708 4.53097 4.62364 4.79514 4.84973 4.94323 5.19413 5.25878 5.35396 5.43472 5.50086 5.55775 5.57645 5.68173 5.77524 5.80209 5.90571 6.01316 6.04014 6.08550 6.15551 6.36082 6.53377 6.58374 6.61260 6.84366 7.55922 7.65353 7.86462 7.93313 8.32461 8.39657 9.26473 9.87552 10.49979 11.45275 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.021518 B = 0.006079 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.917286 B = 4605.044474 C = 5400.443852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.140 4.140 3 C 0.086 3.914 4 H 0.095 0.905 5 F -0.189 7.189 6 C 0.503 3.497 7 O -0.510 6.510 8 N -0.601 5.601 9 C 0.096 3.904 10 C -0.119 4.119 11 C -0.110 4.110 12 H 0.089 0.911 13 C 0.145 3.855 14 N -0.602 5.602 15 C -0.236 4.236 16 H 0.079 0.921 17 C -0.006 4.006 18 N -0.913 5.913 19 Si 0.911 3.089 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.178 3.822 24 C 0.112 3.888 25 H 0.082 0.918 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.039 0.961 36 H 0.017 0.983 37 H 0.253 0.747 38 H 0.057 0.943 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.268 -3.445 -11.594 17.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.179 4.179 3 C 0.046 3.954 4 H 0.113 0.887 5 F -0.170 7.170 6 C 0.288 3.712 7 O -0.384 6.384 8 N -0.336 5.336 9 C -0.027 4.027 10 C -0.157 4.157 11 C -0.130 4.130 12 H 0.107 0.893 13 C 0.018 3.982 14 N -0.329 5.329 15 C -0.364 4.364 16 H 0.097 0.903 17 C -0.203 4.203 18 N -0.560 5.560 19 Si 0.741 3.259 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.217 1.217 23 C 0.052 3.948 24 C 0.009 3.991 25 H 0.100 0.900 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.057 0.943 36 H 0.035 0.965 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.916 -3.893 -10.897 16.610 hybrid contribution 0.451 0.619 0.748 1.070 sum -11.465 -3.275 -10.150 15.659 Atomic orbital electron populations 1.21767 0.94383 1.02368 1.02400 1.21982 0.96951 0.93931 1.04992 1.21634 0.92540 0.95783 0.85441 0.88740 1.92887 1.91967 1.83898 1.48231 1.20478 0.89745 0.80906 0.80058 1.90760 1.65805 1.39335 1.42535 1.48655 1.08159 1.36576 1.40175 1.22437 0.96413 0.90174 0.93652 1.22779 0.93365 0.96942 1.02643 1.22959 0.96556 0.95698 0.97772 0.89257 1.21072 0.93593 0.96934 0.86598 1.44141 1.56514 1.32422 0.99855 1.19042 1.22735 1.07485 0.87113 0.90282 1.24860 1.00120 0.98354 0.96922 1.70014 1.43652 1.29501 1.12840 0.86066 0.79089 0.79511 0.81197 1.20491 1.21772 1.21714 1.21272 0.94365 0.89151 0.89976 1.22941 0.79474 0.98206 0.98497 0.90006 0.92507 0.91875 0.91917 0.89979 0.89367 0.91464 0.90990 0.89358 0.90340 0.94278 0.96520 0.93658 0.92537 0.93700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.83 37.16 0.37 -1.01 16 2 C -0.14 -1.66 5.41 -26.73 -0.14 -1.81 16 3 C 0.09 1.22 3.42 -27.88 -0.10 1.12 16 4 H 0.09 1.02 6.49 -51.93 -0.34 0.68 16 5 F -0.19 -3.22 16.75 2.25 0.04 -3.18 16 6 C 0.50 9.39 6.90 -10.98 -0.08 9.32 16 7 O -0.51 -11.76 16.69 5.56 0.09 -11.67 16 8 N -0.60 -10.54 2.83 -161.70 -0.46 -11.00 16 9 C 0.10 1.25 6.23 -2.43 -0.02 1.23 16 10 C -0.12 -1.68 6.33 -24.65 -0.16 -1.84 16 11 C -0.11 -1.79 3.97 -88.21 -0.35 -2.14 16 12 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 13 C 0.14 2.90 6.50 -3.69 -0.02 2.88 16 14 N -0.60 -15.59 3.37 -172.31 -0.58 -16.17 16 15 C -0.24 -6.68 10.25 -15.06 -0.15 -6.83 16 16 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 17 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 18 N -0.91 -28.42 10.23 55.49 0.57 -27.85 16 19 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 23 C 0.18 4.59 4.63 -3.62 -0.02 4.58 16 24 C 0.11 2.21 3.80 -65.89 -0.25 1.96 16 25 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 26 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.61 7.93 -51.93 -0.41 0.20 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.20 8.05 -51.93 -0.42 0.78 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.85 7.27 -51.93 -0.38 0.47 16 33 H 0.09 1.53 7.93 -51.93 -0.41 1.12 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.04 0.75 7.95 -51.93 -0.41 0.34 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 38 H 0.06 1.67 6.88 -51.93 -0.36 1.31 16 39 H 0.04 1.34 7.51 -51.93 -0.39 0.95 16 LS Contribution 314.81 15.07 4.74 4.74 Total: -1.00 -34.67 314.81 -7.68 -42.34 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -6.04 Total: -2.12 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: -1.01 Total: 7.19 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.47 Total: -55.02 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.04 Total: -3.18 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.67 -7.68 -42.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076137852.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.395 kcal (2) G-P(sol) polarization free energy of solvation -34.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds