Wall clock time and date at job start Mon Mar 30 2020 01:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47211 * 2 1 4 4 H 1.08996 * 109.47569 * 304.99518 * 3 2 1 5 5 F 1.39902 * 109.47240 * 65.00160 * 3 2 1 6 6 C 1.50700 * 109.47043 * 184.99842 * 3 2 1 7 7 O 1.21285 * 120.00528 * 315.00028 * 6 3 2 8 8 N 1.34781 * 120.00081 * 134.99938 * 6 3 2 9 9 C 1.46500 * 120.00092 * 179.97438 * 8 6 3 10 10 H 1.08998 * 110.68142 * 32.01588 * 9 8 6 11 11 C 1.54853 * 110.62733 * 269.02912 * 9 8 6 12 12 C 1.55852 * 103.44483 * 241.51111 * 11 9 8 13 13 H 1.08996 * 115.55644 * 158.81256 * 12 11 9 14 14 C 1.55842 * 105.06103 * 287.42498 * 12 11 9 15 15 C 1.58512 * 102.76037 * 72.07051 * 14 12 11 16 16 C 1.55845 * 110.62541 * 155.00158 * 9 8 6 17 17 H 1.09002 * 115.56037 * 319.67916 * 16 9 8 18 18 N 1.50235 * 101.04819 * 32.93482 * 12 11 9 19 19 C 1.36940 * 130.83182 * 125.31816 * 18 12 11 20 20 H 1.07997 * 120.00353 * 180.93251 * 19 18 12 21 21 C 1.38823 * 119.99873 * 0.93602 * 19 18 12 22 22 N 1.31621 * 119.99755 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99852 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47049 * 60.00047 * 23 21 19 25 25 H 1.48500 * 109.46824 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47025 * 299.99560 * 23 21 19 27 27 H 1.08994 * 109.47144 * 300.00033 * 1 2 3 28 28 H 1.09004 * 109.46754 * 59.99787 * 1 2 3 29 29 H 1.08999 * 109.47038 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47593 * 240.00039 * 2 1 3 31 31 H 1.08999 * 109.47185 * 120.00130 * 2 1 3 32 32 H 0.96994 * 119.99621 * 0.02562 * 8 6 3 33 33 H 1.09000 * 110.62638 * 0.02562 * 11 9 8 34 34 H 1.09000 * 110.62674 * 123.02165 * 11 9 8 35 35 H 1.08999 * 110.62687 * 190.31497 * 14 12 11 36 36 H 1.09006 * 110.62962 * 313.33251 * 14 12 11 37 37 H 1.08995 * 110.52465 * 241.93835 * 15 14 12 38 38 H 1.08998 * 111.38761 * 118.45389 * 15 14 12 39 39 H 0.96996 * 119.99669 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 9 1.6699 2.0680 1.1954 6 6 3.5419 1.4442 -0.1238 7 8 4.2064 0.6810 0.5447 8 7 4.1467 2.2940 -0.9774 9 6 5.6068 2.2961 -1.0973 10 1 6.0083 1.2968 -0.9293 11 6 6.2339 3.3094 -0.1085 12 6 6.9629 4.3227 -1.0417 13 1 7.1672 5.3005 -0.6057 14 6 8.2064 3.5539 -1.5815 15 6 7.5645 2.5166 -2.5936 16 6 6.0422 2.8351 -2.4933 17 1 5.4356 2.5027 -3.3358 18 7 6.0554 4.3157 -2.2390 19 6 5.4219 5.3415 -2.8884 20 1 4.7873 5.1332 -3.7371 21 6 5.5955 6.6491 -2.4558 22 7 6.3685 6.9028 -1.4212 23 14 4.7308 8.0483 -3.3412 24 1 3.2617 7.8414 -3.2776 25 1 5.0775 9.3363 -2.6885 26 1 5.1654 8.0794 -4.7608 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.6153 2.9046 -1.5117 33 1 5.4586 3.8101 0.4715 34 1 6.9465 2.8127 0.5500 35 1 8.8818 4.2332 -2.1015 36 1 8.7241 3.0429 -0.7697 37 1 7.7650 1.4947 -2.2720 38 1 7.9243 2.6780 -3.6098 39 1 6.4901 7.8165 -1.1192 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110898681.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:12 Heat of formation + Delta-G solvation = -70.164675 kcal Electronic energy + Delta-G solvation = -21667.329249 eV Core-core repulsion = 18331.385306 eV Total energy + Delta-G solvation = -3335.943943 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.148 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.94487 -41.25485 -39.81742 -35.39069 -34.93368 -34.37050 -30.95157 -30.50681 -29.85017 -28.03314 -26.08128 -23.69643 -22.41025 -21.55204 -21.35638 -20.35985 -18.85580 -18.71314 -17.96150 -17.06504 -16.75993 -16.56254 -15.98954 -15.72133 -15.20457 -15.08335 -14.88560 -14.48723 -13.91090 -13.72356 -13.64328 -13.25277 -12.93417 -12.88582 -12.85002 -12.77404 -12.65607 -12.10938 -12.02221 -12.00345 -11.91640 -11.84789 -11.65498 -11.23472 -10.97091 -10.91141 -10.64747 -10.05686 -8.87336 -7.75087 -5.15445 1.34666 1.50488 1.52010 1.57950 2.04140 2.51197 3.37412 3.41213 3.45110 3.56078 3.69901 3.90585 3.99998 4.03870 4.25624 4.40779 4.42068 4.47129 4.51475 4.60704 4.67482 4.76350 4.82128 4.88310 5.03414 5.05707 5.14553 5.15407 5.17383 5.34868 5.37615 5.49673 5.56019 5.66977 5.88517 6.27029 6.46818 7.05358 7.07736 7.73435 8.58896 9.32047 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.018065 B = 0.006021 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.556337 B = 4649.376657 C = 5594.150223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.135 4.135 3 C 0.081 3.919 4 H 0.130 0.870 5 F -0.207 7.207 6 C 0.485 3.515 7 O -0.569 6.569 8 N -0.693 5.693 9 C 0.135 3.865 10 H 0.090 0.910 11 C -0.136 4.136 12 C 0.138 3.862 13 H 0.114 0.886 14 C -0.132 4.132 15 C -0.120 4.120 16 C 0.128 3.872 17 H 0.107 0.893 18 N -0.609 5.609 19 C -0.216 4.216 20 H 0.089 0.911 21 C -0.067 4.067 22 N -0.949 5.949 23 Si 0.974 3.026 24 H -0.278 1.278 25 H -0.303 1.303 26 H -0.281 1.281 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.410 0.590 33 H 0.031 0.969 34 H 0.065 0.935 35 H 0.039 0.961 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.476 -12.499 -1.533 14.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C 0.042 3.958 4 H 0.147 0.853 5 F -0.188 7.188 6 C 0.270 3.730 7 O -0.448 6.448 8 N -0.343 5.343 9 C 0.028 3.972 10 H 0.108 0.892 11 C -0.177 4.177 12 C 0.031 3.969 13 H 0.131 0.869 14 C -0.171 4.171 15 C -0.159 4.159 16 C 0.021 3.979 17 H 0.125 0.875 18 N -0.330 5.330 19 C -0.345 4.345 20 H 0.107 0.893 21 C -0.260 4.260 22 N -0.599 5.599 23 Si 0.804 3.196 24 H -0.204 1.204 25 H -0.230 1.230 26 H -0.207 1.207 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.087 0.913 32 H 0.246 0.754 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -7.089 -12.703 -1.111 14.589 hybrid contribution -0.304 1.590 -0.168 1.627 sum -7.393 -11.113 -1.279 13.409 Atomic orbital electron populations 1.21767 0.92519 1.03532 1.02817 1.21975 0.98504 0.92071 1.04734 1.21895 0.90320 0.97790 0.85798 0.85270 1.92843 1.91960 1.84426 1.49529 1.21498 0.91467 0.80316 0.79700 1.90664 1.67309 1.41684 1.45181 1.46102 1.08465 1.37810 1.41885 1.22560 0.78924 0.98272 0.97407 0.89180 1.23353 0.99223 0.97513 0.97597 1.23552 0.88729 0.97377 0.87203 0.86891 1.23571 0.97650 0.97489 0.98422 1.23444 0.95103 0.98385 0.99001 1.23355 0.96135 0.84270 0.94120 0.87539 1.46684 1.53593 1.00674 1.32093 1.19347 1.20651 0.85537 1.08934 0.89345 1.25448 1.01683 0.99348 0.99503 1.69722 1.43279 1.18338 1.28519 0.85201 0.78272 0.78490 0.77635 1.20408 1.22954 1.20712 0.92830 0.90883 0.90350 0.88504 0.91289 0.75430 0.95050 0.91645 0.94247 0.91039 0.89881 0.91820 0.94568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.83 71.98 0.71 -1.52 16 2 C -0.13 -2.67 5.41 30.59 0.17 -2.50 16 3 C 0.08 1.99 3.77 29.85 0.11 2.10 16 4 H 0.13 2.35 7.99 -2.39 -0.02 2.33 16 5 F -0.21 -6.24 16.75 44.97 0.75 -5.48 16 6 C 0.49 15.50 7.17 87.66 0.63 16.13 16 7 O -0.57 -21.99 16.25 -3.05 -0.05 -22.04 16 8 N -0.69 -22.32 5.07 -434.90 -2.21 -24.53 16 9 C 0.13 4.73 2.80 46.61 0.13 4.86 16 10 H 0.09 3.07 7.20 -2.39 -0.02 3.05 16 11 C -0.14 -5.58 6.23 32.21 0.20 -5.38 16 12 C 0.14 6.29 4.67 46.23 0.22 6.50 16 13 H 0.11 6.14 5.52 -2.39 -0.01 6.13 16 14 C -0.13 -5.01 6.63 33.55 0.22 -4.79 16 15 C -0.12 -3.90 6.64 33.55 0.22 -3.68 16 16 C 0.13 4.56 5.01 46.23 0.23 4.79 16 17 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 18 N -0.61 -27.92 3.00 -615.24 -1.85 -29.77 16 19 C -0.22 -10.96 10.59 84.04 0.89 -10.07 16 20 H 0.09 4.19 7.83 -2.91 -0.02 4.16 16 21 C -0.07 -3.60 5.50 84.86 0.47 -3.13 16 22 N -0.95 -54.48 10.47 21.66 0.23 -54.25 16 23 Si 0.97 43.75 29.55 68.60 2.03 45.78 16 24 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 26 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 27 H 0.05 0.90 7.93 -2.39 -0.02 0.88 16 28 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.07 1.61 8.05 -2.39 -0.02 1.59 16 32 H 0.41 12.44 8.55 -92.71 -0.79 11.65 16 33 H 0.03 1.43 7.98 -2.39 -0.02 1.41 16 34 H 0.06 2.48 7.80 -2.39 -0.02 2.46 16 35 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 2.38 7.81 -2.38 -0.02 2.36 16 37 H 0.08 2.24 7.79 -2.39 -0.02 2.22 16 38 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.24 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -64.71 318.25 3.35 -61.36 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 0.26 Total: 25.61 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 4.19 Total: 3.33 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -3.83 Total: -108.55 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.05 Total: -22.04 kcal Atomic # 9 Polarization: -6.24 SS G_CDS: 0.75 Total: -5.48 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -64.71 3.35 -61.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110898681.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.808 kcal (2) G-P(sol) polarization free energy of solvation -64.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds