Wall clock time and date at job start Mon Mar 30 2020 00:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48503 * 109.46978 * 239.99880 * 3 2 1 5 5 H 1.48497 * 109.47236 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47157 * 119.99932 * 3 2 1 7 7 C 1.38814 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99952 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99965 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99838 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.47172 * 180.02562 * 10 9 7 12 12 N 1.46489 * 109.46977 * 180.02562 * 11 10 9 13 13 C 1.34782 * 119.99835 * 179.97438 * 12 11 10 14 14 O 1.21277 * 120.00058 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00026 * 179.97438 * 13 12 11 16 16 N 1.46502 * 109.47188 * 180.02562 * 15 13 12 17 17 C 1.46380 * 119.33103 * 89.99819 * 16 15 13 18 18 C 1.53242 * 109.15205 * 150.96490 * 17 16 15 19 19 C 1.53242 * 108.56481 * 55.48200 * 18 17 16 20 20 N 1.46382 * 109.15108 * 304.51860 * 19 18 17 21 21 C 1.34136 * 121.34052 * 29.31730 * 20 19 18 22 22 O 1.21588 * 118.69512 * 179.14852 * 21 20 19 23 23 H 0.97008 * 120.00121 * 0.02562 * 1 2 3 24 24 H 0.96999 * 120.00275 * 0.02562 * 9 7 2 25 25 H 1.09007 * 109.46899 * 60.00715 * 10 9 7 26 26 H 1.08995 * 109.47861 * 300.00406 * 10 9 7 27 27 H 1.09001 * 109.46505 * 60.00259 * 11 10 9 28 28 H 1.09004 * 109.46871 * 300.00477 * 11 10 9 29 29 H 0.97001 * 120.00868 * 0.02562 * 12 11 10 30 30 H 1.09001 * 109.47294 * 60.00870 * 15 13 12 31 31 H 1.09004 * 109.47516 * 300.00209 * 15 13 12 32 32 H 1.09002 * 109.52172 * 31.06697 * 17 16 15 33 33 H 1.08994 * 109.53014 * 270.86855 * 17 16 15 34 34 H 1.09001 * 109.62162 * 295.75706 * 18 17 16 35 35 H 1.08998 * 109.77253 * 175.29619 * 18 17 16 36 36 H 1.08997 * 109.52104 * 184.61558 * 19 18 17 37 37 H 1.09000 * 109.57241 * 64.45514 * 19 18 17 38 38 H 0.97001 * 119.32574 * 209.03079 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6568 0.0016 11 6 1.0637 -4.8198 0.0022 12 7 1.7961 -6.0884 0.0029 13 6 1.1222 -7.2556 0.0040 14 8 -0.0906 -7.2556 0.0041 15 6 1.8757 -8.5607 0.0041 16 7 0.9237 -9.6742 0.0048 17 6 0.4571 -10.2196 -1.2710 18 6 0.1142 -11.7020 -1.0887 19 6 -0.9057 -11.8307 0.0478 20 7 -0.3651 -11.1978 1.2520 21 6 0.4929 -10.1697 1.1746 22 8 0.8998 -9.6701 2.2057 23 1 -0.4851 0.8401 -0.0004 24 1 0.3555 -2.3881 0.0016 25 1 2.6852 -3.7142 0.8913 26 1 2.6840 -3.7150 -0.8887 27 1 0.4367 -4.7622 -0.8876 28 1 0.4373 -4.7617 0.8925 29 1 2.7661 -6.0885 0.0032 30 1 2.5030 -8.6181 0.8936 31 1 2.5017 -8.6190 -0.8864 32 1 1.2423 -10.1168 -2.0200 33 1 -0.4309 -9.6776 -1.5960 34 1 1.0168 -12.2581 -0.8353 35 1 -0.3128 -12.0977 -2.0102 36 1 -1.0992 -12.8849 0.2458 37 1 -1.8346 -11.3370 -0.2376 38 1 -0.6362 -11.5260 2.1236 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130781352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:50 Heat of formation + Delta-G solvation = -45.220832 kcal Electronic energy + Delta-G solvation = -20375.638944 eV Core-core repulsion = 17060.696609 eV Total energy + Delta-G solvation = -3314.942335 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.148 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.95403 -39.18884 -36.63445 -35.75096 -34.95368 -33.78191 -31.46374 -31.15202 -28.97360 -27.12631 -25.68500 -23.69861 -23.09633 -21.45212 -20.61946 -19.16149 -17.79902 -17.49951 -17.35906 -17.06538 -15.80073 -15.70840 -15.32205 -14.81745 -14.52393 -14.31110 -14.17663 -14.02982 -13.90025 -13.34142 -13.12435 -12.81787 -12.57960 -12.06051 -11.75650 -11.67208 -11.32539 -11.07508 -10.79674 -10.77607 -10.26765 -10.14993 -10.02962 -9.73896 -9.33820 -8.94845 -8.77888 -8.76749 -6.97167 -5.77292 -3.07992 2.36402 2.77677 3.01898 3.37287 3.44420 3.48501 3.50010 3.61093 4.25827 4.39554 4.59836 4.63660 4.77616 4.90256 4.96972 5.12779 5.18635 5.26176 5.27989 5.52681 5.57885 5.66311 5.82136 5.98363 6.00477 6.19170 6.30525 6.53784 6.74615 6.79805 6.84991 7.59011 7.66828 7.67705 8.36826 8.40546 8.43996 9.51397 10.06668 10.41413 11.45322 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.051648 B = 0.002807 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.002067 B = 9972.647842 C = 9987.096377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.145 3.855 11 C 0.112 3.888 12 N -0.723 5.723 13 C 0.493 3.507 14 O -0.534 6.534 15 C 0.113 3.887 16 N -0.605 5.605 17 C 0.112 3.888 18 C -0.151 4.151 19 C 0.109 3.891 20 N -0.738 5.738 21 C 0.717 3.283 22 O -0.595 6.595 23 H 0.257 0.743 24 H 0.386 0.614 25 H 0.025 0.975 26 H 0.024 0.976 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.399 0.601 30 H 0.116 0.884 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.620 -27.698 -4.254 28.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.017 3.983 11 C -0.011 4.011 12 N -0.375 5.375 13 C 0.277 3.723 14 O -0.410 6.410 15 C -0.014 4.014 16 N -0.342 5.342 17 C -0.011 4.011 18 C -0.189 4.189 19 C -0.016 4.016 20 N -0.396 5.396 21 C 0.418 3.582 22 O -0.473 6.473 23 H 0.067 0.933 24 H 0.220 0.780 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.233 0.767 30 H 0.134 0.866 31 H 0.126 0.874 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 2.112 -27.242 -3.897 27.601 hybrid contribution 0.358 0.850 0.181 0.939 sum 2.470 -26.393 -3.716 26.767 Atomic orbital electron populations 1.69661 1.05169 1.25947 1.57181 1.24784 0.95564 0.97827 1.02700 0.86215 0.78481 0.83289 0.77858 1.21201 1.21623 1.21175 1.19155 0.91012 0.83884 1.43468 0.91065 1.42192 1.06012 0.99599 1.89700 1.20759 0.93493 0.85665 0.98398 1.21550 0.95435 0.81737 1.02422 1.45895 1.10385 1.05944 1.75302 1.21146 0.88820 0.85791 0.76542 1.90697 1.13952 1.87472 1.48851 1.21202 0.91022 0.83585 1.05610 1.46279 1.47954 1.34955 1.04968 1.21625 1.00838 0.93315 0.85352 1.22192 1.00392 0.96505 0.99832 1.21520 0.96564 0.98327 0.85153 1.44872 1.49052 1.35635 1.09999 1.15331 0.79428 0.79889 0.83584 1.90967 1.61453 1.62082 1.32798 0.93317 0.78021 0.95739 0.95811 0.91430 0.91426 0.76685 0.86612 0.87437 0.89859 0.91099 0.90440 0.88441 0.89940 0.91600 0.74847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.73 13.06 55.49 0.72 -28.00 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -19.01 5.60 -59.90 -0.34 -19.35 16 10 C 0.15 2.92 6.37 -4.04 -0.03 2.89 16 11 C 0.11 2.02 5.79 -4.04 -0.02 2.00 16 12 N -0.72 -10.22 5.56 -60.30 -0.33 -10.55 16 13 C 0.49 7.39 7.89 -10.98 -0.09 7.30 16 14 O -0.53 -10.40 16.43 5.56 0.09 -10.31 16 15 C 0.11 1.21 5.83 -5.19 -0.03 1.18 16 16 N -0.61 -6.83 2.30 -181.15 -0.42 -7.24 16 17 C 0.11 0.85 6.55 -3.98 -0.03 0.82 16 18 C -0.15 -0.74 6.20 -26.48 -0.16 -0.90 16 19 C 0.11 0.64 7.21 -3.98 -0.03 0.61 16 20 N -0.74 -7.08 5.58 -65.53 -0.37 -7.44 16 21 C 0.72 9.71 8.18 -88.05 -0.72 8.99 16 22 O -0.59 -10.56 16.50 5.29 0.09 -10.47 16 23 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 24 H 0.39 10.66 7.67 -40.82 -0.31 10.34 16 25 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.40 4.28 8.47 -40.82 -0.35 3.93 16 30 H 0.12 1.25 7.32 -51.93 -0.38 0.87 16 31 H 0.11 0.70 7.86 -51.93 -0.41 0.29 16 32 H 0.08 0.44 7.86 -51.93 -0.41 0.03 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.41 3.48 8.88 -40.82 -0.36 3.12 16 LS Contribution 322.90 15.07 4.87 4.87 Total: -1.00 -38.72 322.90 -7.63 -46.35 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -5.57 Total: 9.27 kcal Atomic # 6 Polarization: 16.70 SS G_CDS: -1.35 Total: 15.34 kcal Atomic # 7 Polarization: -71.86 SS G_CDS: -0.73 Total: -72.59 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: 0.18 Total: -20.78 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -38.72 -7.63 -46.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130781352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.128 kcal (2) G-P(sol) polarization free energy of solvation -38.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds