Wall clock time and date at job start Mon Mar 30 2020 00:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48503 * 109.46978 * 239.99880 * 3 2 1 5 5 H 1.48497 * 109.47236 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47157 * 119.99932 * 3 2 1 7 7 C 1.38814 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99952 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99965 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99838 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.47172 * 180.02562 * 10 9 7 12 12 N 1.46489 * 109.46977 * 180.02562 * 11 10 9 13 13 C 1.34782 * 119.99835 * 179.97438 * 12 11 10 14 14 O 1.21277 * 120.00058 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00026 * 179.97438 * 13 12 11 16 16 N 1.46502 * 109.47188 * 180.02562 * 15 13 12 17 17 C 1.46380 * 119.33103 * 89.99819 * 16 15 13 18 18 C 1.53242 * 109.15205 * 150.96490 * 17 16 15 19 19 C 1.53242 * 108.56481 * 55.48200 * 18 17 16 20 20 N 1.46382 * 109.15108 * 304.51860 * 19 18 17 21 21 C 1.34136 * 121.34052 * 29.31730 * 20 19 18 22 22 O 1.21588 * 118.69512 * 179.14852 * 21 20 19 23 23 H 0.97008 * 120.00121 * 0.02562 * 1 2 3 24 24 H 0.96999 * 120.00275 * 0.02562 * 9 7 2 25 25 H 1.09007 * 109.46899 * 60.00715 * 10 9 7 26 26 H 1.08995 * 109.47861 * 300.00406 * 10 9 7 27 27 H 1.09001 * 109.46505 * 60.00259 * 11 10 9 28 28 H 1.09004 * 109.46871 * 300.00477 * 11 10 9 29 29 H 0.97001 * 120.00868 * 0.02562 * 12 11 10 30 30 H 1.09001 * 109.47294 * 60.00870 * 15 13 12 31 31 H 1.09004 * 109.47516 * 300.00209 * 15 13 12 32 32 H 1.09002 * 109.52172 * 31.06697 * 17 16 15 33 33 H 1.08994 * 109.53014 * 270.86855 * 17 16 15 34 34 H 1.09001 * 109.62162 * 295.75706 * 18 17 16 35 35 H 1.08998 * 109.77253 * 175.29619 * 18 17 16 36 36 H 1.08997 * 109.52104 * 184.61558 * 19 18 17 37 37 H 1.09000 * 109.57241 * 64.45514 * 19 18 17 38 38 H 0.97001 * 119.32574 * 209.03079 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6568 0.0016 11 6 1.0637 -4.8198 0.0022 12 7 1.7961 -6.0884 0.0029 13 6 1.1222 -7.2556 0.0040 14 8 -0.0906 -7.2556 0.0041 15 6 1.8757 -8.5607 0.0041 16 7 0.9237 -9.6742 0.0048 17 6 0.4571 -10.2196 -1.2710 18 6 0.1142 -11.7020 -1.0887 19 6 -0.9057 -11.8307 0.0478 20 7 -0.3651 -11.1978 1.2520 21 6 0.4929 -10.1697 1.1746 22 8 0.8998 -9.6701 2.2057 23 1 -0.4851 0.8401 -0.0004 24 1 0.3555 -2.3881 0.0016 25 1 2.6852 -3.7142 0.8913 26 1 2.6840 -3.7150 -0.8887 27 1 0.4367 -4.7622 -0.8876 28 1 0.4373 -4.7617 0.8925 29 1 2.7661 -6.0885 0.0032 30 1 2.5030 -8.6181 0.8936 31 1 2.5017 -8.6190 -0.8864 32 1 1.2423 -10.1168 -2.0200 33 1 -0.4309 -9.6776 -1.5960 34 1 1.0168 -12.2581 -0.8353 35 1 -0.3128 -12.0977 -2.0102 36 1 -1.0992 -12.8849 0.2458 37 1 -1.8346 -11.3370 -0.2376 38 1 -0.6362 -11.5260 2.1236 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130781352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:50 Heat of formation + Delta-G solvation = -77.661725 kcal Electronic energy + Delta-G solvation = -20377.045687 eV Core-core repulsion = 17060.696609 eV Total energy + Delta-G solvation = -3316.349078 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.148 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.84974 -40.39878 -37.51310 -37.33422 -35.86462 -35.47113 -33.20291 -32.04735 -30.28139 -28.45503 -26.45039 -25.47492 -23.96868 -23.08686 -21.77564 -19.97682 -19.30859 -18.60107 -18.32917 -18.26642 -16.99314 -16.72597 -16.58389 -16.49910 -15.64850 -15.46637 -15.28124 -15.15731 -14.91223 -14.73850 -14.63365 -14.20160 -13.40750 -13.04997 -13.03115 -12.73968 -12.60739 -12.54566 -12.32278 -12.19466 -12.12858 -11.87815 -11.28603 -11.19668 -10.98611 -10.18299 -10.15123 -9.63450 -9.08095 -7.97512 -5.29425 1.47427 1.52053 1.52383 1.58271 1.60498 2.04770 2.29069 2.58459 2.89214 3.36498 3.74904 3.80149 3.97408 4.01929 4.07047 4.16397 4.20450 4.32990 4.39877 4.50526 4.56522 4.68990 4.78621 4.83232 5.01231 5.12182 5.21822 5.31866 5.37635 5.48021 5.57794 6.08053 6.22933 6.54255 6.76169 7.23484 7.28871 7.50487 8.00611 8.23834 9.26192 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.051648 B = 0.002807 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.002067 B = 9972.647842 C = 9987.096377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.078 4.078 3 Si 0.982 3.018 4 H -0.273 1.273 5 H -0.297 1.297 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.084 0.916 9 N -0.749 5.749 10 C 0.150 3.850 11 C 0.130 3.870 12 N -0.709 5.709 13 C 0.489 3.511 14 O -0.585 6.585 15 C 0.118 3.882 16 N -0.607 5.607 17 C 0.102 3.898 18 C -0.142 4.142 19 C 0.101 3.899 20 N -0.733 5.733 21 C 0.702 3.298 22 O -0.650 6.650 23 H 0.253 0.747 24 H 0.373 0.627 25 H 0.035 0.965 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.041 0.959 29 H 0.419 0.581 30 H 0.117 0.883 31 H 0.160 0.840 32 H 0.113 0.887 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.129 0.871 36 H 0.115 0.885 37 H 0.061 0.939 38 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.547 -29.353 -5.632 30.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.810 3.190 4 H -0.199 1.199 5 H -0.223 1.223 6 H -0.202 1.202 7 C -0.381 4.381 8 H 0.102 0.898 9 N -0.392 5.392 10 C 0.023 3.977 11 C 0.004 3.996 12 N -0.363 5.363 13 C 0.275 3.725 14 O -0.465 6.465 15 C -0.009 4.009 16 N -0.342 5.342 17 C -0.020 4.020 18 C -0.180 4.180 19 C -0.022 4.022 20 N -0.390 5.390 21 C 0.403 3.597 22 O -0.533 6.533 23 H 0.061 0.939 24 H 0.204 0.796 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.257 0.743 30 H 0.134 0.866 31 H 0.177 0.823 32 H 0.131 0.869 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.147 0.853 36 H 0.133 0.867 37 H 0.079 0.921 38 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 4.098 -28.974 -5.321 29.742 hybrid contribution -0.264 1.258 0.594 1.416 sum 3.834 -27.716 -4.727 28.376 Atomic orbital electron populations 1.69841 1.06927 1.26408 1.59109 1.25712 0.96453 1.01601 1.03280 0.85095 0.77086 0.78437 0.78412 1.19871 1.22294 1.20167 1.19640 0.91782 0.84837 1.41882 0.89780 1.42448 1.05734 1.01200 1.89825 1.20853 0.93515 0.83934 0.99376 1.21091 0.94844 0.83042 1.00573 1.45705 1.11281 1.04495 1.74817 1.22068 0.88473 0.87086 0.74874 1.90676 1.16414 1.88221 1.51143 1.21382 0.90644 0.80876 1.08038 1.46486 1.47641 1.34555 1.05567 1.21930 1.01086 0.94688 0.84257 1.22217 1.00455 0.94622 1.00705 1.21846 0.96534 0.99725 0.84143 1.44966 1.47796 1.34608 1.11624 1.15760 0.79862 0.80511 0.83609 1.90913 1.63570 1.64015 1.34774 0.93879 0.79585 0.94709 0.93856 0.92728 0.94059 0.74323 0.86557 0.82268 0.86861 0.93009 0.89785 0.85294 0.86708 0.92055 0.74613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.12 13.06 21.65 0.28 -60.84 16 2 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 3 Si 0.98 46.30 29.55 68.60 2.03 48.33 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 7 C -0.25 -14.09 9.99 84.03 0.84 -13.25 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 9 N -0.75 -39.22 5.60 -343.44 -1.92 -41.15 16 10 C 0.15 5.90 6.37 86.38 0.55 6.45 16 11 C 0.13 4.71 5.79 86.38 0.50 5.21 16 12 N -0.71 -19.33 5.56 -463.07 -2.57 -21.91 16 13 C 0.49 14.39 7.89 87.66 0.69 15.08 16 14 O -0.59 -23.33 16.43 -3.02 -0.05 -23.38 16 15 C 0.12 2.30 5.83 85.63 0.50 2.80 16 16 N -0.61 -12.90 2.30 -845.65 -1.95 -14.85 16 17 C 0.10 1.31 6.55 86.48 0.57 1.87 16 18 C -0.14 -0.94 6.20 30.76 0.19 -0.75 16 19 C 0.10 0.96 7.21 86.48 0.62 1.58 16 20 N -0.73 -13.59 5.58 -479.84 -2.68 -16.27 16 21 C 0.70 18.92 8.18 179.45 1.47 20.39 16 22 O -0.65 -23.71 16.50 -3.99 -0.07 -23.77 16 23 H 0.25 15.35 8.31 -92.70 -0.77 14.58 16 24 H 0.37 21.18 7.67 -92.71 -0.71 20.47 16 25 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 26 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.42 8.03 8.47 -92.71 -0.79 7.24 16 30 H 0.12 2.34 7.32 -2.39 -0.02 2.33 16 31 H 0.16 1.41 7.86 -2.38 -0.02 1.39 16 32 H 0.11 0.76 7.86 -2.39 -0.02 0.74 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 0.51 8.14 -2.39 -0.02 0.50 16 35 H 0.13 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.42 6.96 8.88 -92.71 -0.82 6.13 16 Total: -1.00 -87.12 322.90 -1.76 -88.88 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: -1.22 Total: 29.68 kcal Atomic # 6 Polarization: 28.89 SS G_CDS: 6.40 Total: 35.29 kcal Atomic # 7 Polarization: -146.17 SS G_CDS: -8.84 Total: -155.01 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -0.12 Total: -47.15 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -87.12 -1.76 -88.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130781352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.213 kcal (2) G-P(sol) polarization free energy of solvation -87.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds