Wall clock time and date at job start Mon Mar 30 2020 00:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00265 * 2 1 4 4 H 1.48508 * 109.47005 * 270.00136 * 3 2 1 5 5 H 1.48499 * 109.47142 * 29.99657 * 3 2 1 6 6 H 1.48497 * 109.47097 * 149.99938 * 3 2 1 7 7 C 1.37878 * 119.99683 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00237 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99747 * 179.97438 * 7 2 1 10 10 N 1.46893 * 109.46838 * 180.02562 * 9 7 2 11 11 C 1.46907 * 110.99881 * 170.00484 * 10 9 7 12 12 C 1.53241 * 109.34139 * 187.25350 * 11 10 9 13 13 N 1.47083 * 108.51934 * 306.17045 * 12 11 10 14 14 C 1.34774 * 120.87670 * 231.18507 * 13 12 11 15 15 O 1.21277 * 120.00187 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.99787 * 180.02562 * 14 13 12 17 17 C 1.53786 * 113.61613 * 180.02562 * 16 14 13 18 18 C 1.53781 * 87.17350 * 89.15662 * 17 16 14 19 19 F 1.39895 * 113.61535 * 139.93941 * 18 17 16 20 20 C 1.53782 * 87.08260 * 25.39213 * 18 17 16 21 21 C 1.47077 * 118.23930 * 51.45723 * 13 12 11 22 22 C 1.46897 * 111.00267 * 294.30205 * 10 9 7 23 23 H 0.97002 * 120.00148 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.46935 * 60.00240 * 9 7 2 25 25 H 1.08999 * 109.47033 * 300.00461 * 9 7 2 26 26 H 1.09000 * 109.49296 * 67.29644 * 11 10 9 27 27 H 1.08999 * 109.48772 * 307.20986 * 11 10 9 28 28 H 1.08991 * 109.63000 * 186.45798 * 12 11 10 29 29 H 1.09006 * 109.62874 * 65.87693 * 12 11 10 30 30 H 1.09000 * 112.91063 * 48.74933 * 16 14 13 31 31 H 1.09002 * 113.61357 * 334.56579 * 17 16 14 32 32 H 1.09002 * 113.61608 * 203.74741 * 17 16 14 33 33 H 1.08996 * 113.61580 * 270.76247 * 18 17 16 34 34 H 1.08997 * 113.61668 * 89.11298 * 20 18 17 35 35 H 1.08998 * 113.61674 * 219.93807 * 20 18 17 36 36 H 1.08995 * 109.63129 * 68.25211 * 21 13 12 37 37 H 1.09005 * 109.62804 * 188.83354 * 21 13 12 38 38 H 1.09004 * 109.49775 * 292.70691 * 22 10 9 39 39 H 1.09007 * 109.49270 * 52.76361 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0010 -2.5791 0.0001 11 6 5.4499 -2.6253 -0.2385 12 6 5.8895 -4.0831 -0.4112 13 7 5.4262 -4.8519 0.7540 14 6 6.2766 -5.6316 1.4507 15 8 7.4407 -5.7065 1.1192 16 6 5.7805 -6.4113 2.6411 17 6 6.8721 -7.2499 3.3266 18 6 7.1688 -6.0154 4.1943 19 9 7.4338 -6.3220 5.5332 20 6 5.7156 -5.5831 3.9373 21 6 4.0092 -4.7520 1.1349 22 6 3.6449 -3.2633 1.2502 23 1 -0.4850 0.8400 -0.0004 24 1 3.8752 -0.6797 0.8895 25 1 3.8745 -0.6808 -0.8905 26 1 5.9726 -2.1860 0.6111 27 1 5.6877 -2.0642 -1.1423 28 1 6.9765 -4.1327 -0.4740 29 1 5.4483 -4.4935 -1.3196 30 1 4.8675 -6.9691 2.4324 31 1 7.6924 -7.5250 2.6635 32 1 6.4821 -8.0969 3.8912 33 1 7.9089 -5.3437 3.7594 34 1 5.0080 -5.9738 4.6685 35 1 5.6019 -4.5122 3.7686 36 1 3.3908 -5.2254 0.3724 37 1 3.8525 -5.2441 2.0949 38 1 4.1928 -2.8151 2.0791 39 1 2.5737 -3.1645 1.4265 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142575321.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:23 Heat of formation + Delta-G solvation = -72.847290 kcal Electronic energy + Delta-G solvation = -21299.355399 eV Core-core repulsion = 17963.295129 eV Total energy + Delta-G solvation = -3336.060270 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.59029 -41.67752 -39.45439 -37.80191 -36.00105 -34.42352 -32.24376 -30.54305 -28.02306 -26.88450 -26.45158 -24.63760 -23.61872 -22.51645 -21.21294 -19.37770 -18.93456 -18.49776 -17.46434 -17.09383 -16.66193 -16.52972 -16.31434 -16.04828 -15.75685 -15.63558 -15.17209 -14.94798 -14.47865 -14.30331 -13.78026 -13.58183 -13.40941 -13.25149 -13.02821 -12.86535 -12.61262 -12.49686 -12.27217 -12.20759 -11.93601 -11.85008 -11.46664 -11.40717 -11.33610 -10.81831 -10.77261 -9.80317 -9.07044 -8.27557 -6.30416 1.35303 1.36719 1.45913 1.46572 1.88979 2.34296 3.05084 3.14409 3.21875 3.27476 3.35647 3.52882 3.77811 3.91189 3.99955 4.06188 4.20921 4.27229 4.40226 4.54013 4.59186 4.64329 4.71681 4.72035 4.80108 4.81489 4.85937 4.92853 4.94227 5.04865 5.12670 5.27845 5.42327 5.52856 5.92477 6.28314 6.37865 6.59835 6.76010 7.05435 7.33409 8.88322 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.028372 B = 0.004275 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.652154 B = 6547.819955 C = 6856.678337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.256 1.256 7 C -0.513 4.513 8 H 0.047 0.953 9 C 0.171 3.829 10 N -0.539 5.539 11 C 0.041 3.959 12 C 0.123 3.877 13 N -0.607 5.607 14 C 0.528 3.472 15 O -0.579 6.579 16 C -0.133 4.133 17 C -0.130 4.130 18 C 0.054 3.946 19 F -0.218 7.218 20 C -0.136 4.136 21 C 0.120 3.880 22 C 0.050 3.950 23 H 0.266 0.734 24 H -0.016 1.016 25 H 0.028 0.972 26 H 0.023 0.977 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.142 0.858 31 H 0.080 0.920 32 H 0.124 0.876 33 H 0.097 0.903 34 H 0.129 0.871 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.118 0.882 38 H 0.025 0.975 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.095 -12.673 6.291 18.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.185 4.185 3 Si 0.765 3.235 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.180 1.180 7 C -0.551 4.551 8 H 0.065 0.935 9 C 0.044 3.956 10 N -0.264 5.264 11 C -0.088 4.088 12 C 0.000 4.000 13 N -0.338 5.338 14 C 0.317 3.683 15 O -0.459 6.459 16 C -0.153 4.153 17 C -0.168 4.168 18 C 0.018 3.982 19 F -0.199 7.199 20 C -0.174 4.174 21 C -0.003 4.003 22 C -0.079 4.079 23 H 0.075 0.925 24 H 0.002 0.998 25 H 0.047 0.953 26 H 0.042 0.958 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.099 0.901 30 H 0.160 0.840 31 H 0.099 0.901 32 H 0.142 0.858 33 H 0.115 0.885 34 H 0.147 0.853 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.136 0.864 38 H 0.043 0.957 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.332 -12.844 5.757 18.714 hybrid contribution 0.273 1.649 0.459 1.734 sum 12.606 -11.195 6.216 17.969 Atomic orbital electron populations 1.70025 1.07945 1.28025 1.52511 1.25735 0.95478 1.02751 0.94503 0.85816 0.79264 0.79297 0.79135 1.19155 1.20926 1.17966 1.21217 0.90694 0.93456 1.49754 0.93469 1.19938 0.94565 0.86135 0.94930 1.61813 1.12184 1.17135 1.35230 1.22500 0.88178 0.96974 1.01100 1.21657 1.00387 0.89642 0.88303 1.48264 1.10548 1.45032 1.30000 1.20571 0.84947 0.78940 0.83815 1.90657 1.18715 1.66081 1.70448 1.22243 1.02620 0.98635 0.91848 1.23462 0.98541 0.97132 0.97690 1.23305 0.98337 0.99683 0.76861 1.92771 1.95563 1.94282 1.37267 1.23620 0.96567 1.01183 0.96050 1.22102 0.79813 0.95479 1.02858 1.22442 1.01555 0.94079 0.89842 0.92457 0.99794 0.95347 0.95845 0.89219 0.89001 0.90129 0.83998 0.90128 0.85780 0.88475 0.85271 0.90556 0.89956 0.86413 0.95673 0.90317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.87 13.96 21.45 0.30 -56.57 16 2 C 0.01 0.73 5.47 84.66 0.46 1.20 16 3 Si 0.94 42.66 27.47 68.60 1.88 44.54 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -10.95 6.54 99.48 0.65 -10.30 16 7 C -0.51 -27.96 8.96 25.60 0.23 -27.73 16 8 H 0.05 2.83 7.37 -2.91 -0.02 2.81 16 9 C 0.17 7.77 3.79 85.56 0.32 8.09 16 10 N -0.54 -20.33 4.62 -898.84 -4.15 -24.48 16 11 C 0.04 1.28 5.62 86.38 0.49 1.76 16 12 C 0.12 3.30 6.60 86.35 0.57 3.87 16 13 N -0.61 -15.27 3.00 -817.05 -2.45 -17.73 16 14 C 0.53 12.94 6.97 87.66 0.61 13.55 16 15 O -0.58 -17.89 15.22 -3.02 -0.05 -17.93 16 16 C -0.13 -2.20 2.93 -10.95 -0.03 -2.24 16 17 C -0.13 -2.14 7.34 31.12 0.23 -1.91 16 18 C 0.05 1.05 5.32 31.12 0.17 1.22 16 19 F -0.22 -4.88 17.41 44.97 0.78 -4.09 16 20 C -0.14 -2.18 7.06 31.18 0.22 -1.96 16 21 C 0.12 2.84 6.49 86.50 0.56 3.41 16 22 C 0.05 1.63 5.47 86.54 0.47 2.11 16 23 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 24 H -0.02 -0.72 7.18 -2.38 -0.02 -0.74 16 25 H 0.03 1.28 7.40 -2.39 -0.02 1.26 16 26 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.09 2.61 7.99 -2.39 -0.02 2.60 16 28 H 0.09 2.45 7.06 -2.39 -0.02 2.44 16 29 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 30 H 0.14 1.60 7.53 -2.39 -0.02 1.58 16 31 H 0.08 1.57 7.43 -2.39 -0.02 1.55 16 32 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 2.14 8.08 -2.39 -0.02 2.12 16 34 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.08 1.39 8.10 -2.39 -0.02 1.37 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.12 1.98 5.67 -2.38 -0.01 1.97 16 38 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 2.99 6.67 -2.38 -0.02 2.97 16 Total: -1.00 -67.05 312.10 1.60 -65.46 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 0.98 Total: 9.45 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 4.30 Total: 1.35 kcal Atomic # 7 Polarization: -92.47 SS G_CDS: -6.31 Total: -98.78 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.05 Total: -17.93 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.78 Total: -4.09 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.88 Total: 44.54 kcal Total: -67.05 1.60 -65.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142575321.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.389 kcal (2) G-P(sol) polarization free energy of solvation -67.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds