Wall clock time and date at job start Mon Mar 30 2020 01:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47558 * 2 1 4 4 H 1.09000 * 109.47356 * 305.00092 * 3 2 1 5 5 C 1.50695 * 109.47218 * 184.99957 * 3 2 1 6 6 H 1.08001 * 120.00082 * 240.00175 * 5 3 2 7 7 C 1.37882 * 120.00104 * 59.72380 * 5 3 2 8 8 N 1.31507 * 119.99682 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99881 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46955 * 90.00379 * 9 7 5 11 11 H 1.48507 * 109.46773 * 210.00113 * 9 7 5 12 12 H 1.48494 * 109.47394 * 330.00084 * 9 7 5 13 13 N 1.46508 * 109.47005 * 64.99726 * 3 2 1 14 14 C 1.38425 * 120.00020 * 275.00075 * 13 3 2 15 15 N 1.31951 * 120.14521 * 352.82447 * 14 13 3 16 16 C 1.32652 * 122.64063 * 179.70364 * 15 14 13 17 17 C 1.36074 * 121.99112 * 0.57583 * 16 15 14 18 18 C 1.40858 * 118.85303 * 359.72414 * 17 16 15 19 19 C 1.40183 * 122.16461 * 179.97438 * 18 17 16 20 20 C 1.36283 * 119.47314 * 180.02562 * 19 18 17 21 21 C 1.39282 * 120.97223 * 0.02562 * 20 19 18 22 22 C 1.36292 * 121.04572 * 0.02562 * 21 20 19 23 23 C 1.50704 * 120.23229 * 179.97438 * 22 21 20 24 24 C 1.40086 * 119.54229 * 359.97438 * 22 21 20 25 25 H 1.09004 * 109.46929 * 300.00345 * 1 2 3 26 26 H 1.09005 * 109.46750 * 59.99622 * 1 2 3 27 27 H 1.09001 * 109.47462 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46929 * 239.99655 * 2 1 3 29 29 H 1.09005 * 109.46750 * 120.00378 * 2 1 3 30 30 H 0.97003 * 120.00212 * 180.02562 * 8 7 5 31 31 H 0.97005 * 119.99424 * 95.00293 * 13 3 2 32 32 H 1.07996 * 119.00936 * 180.30185 * 16 15 14 33 33 H 1.07996 * 120.57285 * 179.69830 * 17 16 15 34 34 H 1.08002 * 120.26389 * 0.02562 * 19 18 17 35 35 H 1.08004 * 119.50969 * 179.97438 * 20 19 18 36 36 H 1.08000 * 119.47362 * 179.97438 * 21 20 19 37 37 H 1.08996 * 109.47064 * 245.71679 * 23 22 21 38 38 H 1.08995 * 109.46878 * 5.71795 * 23 22 21 39 39 H 1.09006 * 109.47348 * 125.71427 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4441 -0.1238 6 1 4.1473 1.8886 0.6523 7 6 4.1436 0.8731 -1.2252 8 7 3.4067 0.3274 -2.1679 9 14 6.0052 0.8759 -1.3790 10 1 6.5555 -0.3524 -0.7515 11 1 6.3832 0.9103 -2.8148 12 1 6.5568 2.0719 -0.6932 13 7 1.6525 2.0974 1.2519 14 6 0.4023 2.6798 1.3701 15 7 -0.3878 2.7723 0.3173 16 6 -1.5968 3.3152 0.3756 17 6 -2.1023 3.8271 1.5306 18 6 -1.3177 3.7720 2.6992 19 6 -1.7693 4.2785 3.9258 20 6 -0.9641 4.1968 5.0223 21 6 0.3003 3.6183 4.9416 22 6 0.7702 3.1173 3.7644 23 6 2.1415 2.4957 3.6977 24 6 -0.0303 3.1841 2.6167 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8299 -0.0746 -2.9426 31 1 2.2721 2.1231 1.9978 32 1 -2.1963 3.3562 -0.5217 33 1 -3.0878 4.2683 1.5510 34 1 -2.7476 4.7298 4.0014 35 1 -1.3112 4.5872 5.9676 36 1 0.9185 3.5666 5.8256 37 1 2.7852 3.1031 3.0616 38 1 2.5659 2.4438 4.7003 39 1 2.0650 1.4905 3.2831 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161056097.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:26 Heat of formation + Delta-G solvation = 59.138155 kcal Electronic energy + Delta-G solvation = -20821.524479 eV Core-core repulsion = 17921.956752 eV Total energy + Delta-G solvation = -2899.567727 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.90223 -38.66526 -37.81387 -35.48082 -33.70070 -32.44610 -31.95309 -30.70891 -28.67620 -27.63613 -25.18041 -24.46921 -23.81080 -22.09174 -21.52338 -18.97946 -18.63118 -17.72512 -17.46148 -16.84567 -16.52379 -16.06105 -15.63114 -15.08783 -14.72889 -14.61764 -14.55293 -14.26050 -13.98094 -13.65385 -13.51856 -13.16437 -12.88066 -12.84440 -12.77768 -12.56827 -12.29041 -12.15485 -11.93138 -11.85187 -11.59520 -11.20822 -10.90590 -10.50555 -10.02102 -9.93042 -9.64169 -8.15645 -7.98311 -6.31423 -0.19822 0.16910 1.19083 1.42794 1.43520 1.53571 2.35748 2.36994 2.71063 3.14122 3.33614 3.69816 3.79664 3.99078 4.01882 4.21173 4.42597 4.45904 4.48880 4.53549 4.53984 4.58338 4.68147 4.78787 4.85350 5.03934 5.05848 5.12384 5.23390 5.29053 5.34525 5.47752 5.57519 5.60751 5.64016 5.66868 5.87550 5.92965 6.13239 6.14461 6.46287 6.79704 6.87911 7.37567 7.67049 8.90145 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.024196 B = 0.005840 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.953598 B = 4793.104287 C = 5505.380442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.118 4.118 3 C 0.281 3.719 4 H 0.013 0.987 5 C -0.552 4.552 6 H 0.061 0.939 7 C 0.020 3.980 8 N -0.910 5.910 9 Si 0.965 3.035 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.268 1.268 13 N -0.705 5.705 14 C 0.426 3.574 15 N -0.595 5.595 16 C 0.122 3.878 17 C -0.251 4.251 18 C 0.001 3.999 19 C -0.140 4.140 20 C -0.083 4.083 21 C -0.146 4.146 22 C -0.058 4.058 23 C -0.140 4.140 24 C -0.177 4.177 25 H 0.033 0.967 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.073 0.927 29 H 0.028 0.972 30 H 0.265 0.735 31 H 0.414 0.586 32 H 0.159 0.841 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.159 0.841 36 H 0.151 0.849 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.793 6.160 14.231 17.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.158 4.158 3 C 0.177 3.823 4 H 0.030 0.970 5 C -0.590 4.590 6 H 0.080 0.920 7 C -0.180 4.180 8 N -0.548 5.548 9 Si 0.790 3.210 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.193 1.193 13 N -0.345 5.345 14 C 0.178 3.822 15 N -0.317 5.317 16 C -0.024 4.024 17 C -0.275 4.275 18 C -0.004 4.004 19 C -0.158 4.158 20 C -0.102 4.102 21 C -0.164 4.164 22 C -0.060 4.060 23 C -0.196 4.196 24 C -0.183 4.183 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.266 0.734 32 H 0.176 0.824 33 H 0.174 0.826 34 H 0.171 0.829 35 H 0.177 0.823 36 H 0.169 0.831 37 H 0.092 0.908 38 H 0.127 0.873 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.428 5.663 13.066 16.061 hybrid contribution 0.807 0.074 0.084 0.814 sum -6.621 5.736 13.150 15.801 Atomic orbital electron populations 1.21601 0.96910 0.98735 1.00194 1.21770 0.93925 0.99419 1.00643 1.18385 0.93021 0.88977 0.81939 0.96957 1.21562 0.91865 1.38867 1.06706 0.92046 1.25679 1.02978 0.94374 0.94992 1.70029 1.36828 1.38013 1.09979 0.85452 0.79539 0.78738 0.77256 1.19654 1.21018 1.19260 1.46735 1.12458 1.56458 1.18853 1.18978 0.87203 0.87446 0.88577 1.67251 1.07784 1.25731 1.30916 1.22195 0.90153 0.91498 0.98577 1.21626 1.02902 1.10183 0.92763 1.18287 0.91689 0.94637 0.95831 1.21182 1.01629 1.02007 0.91024 1.21319 0.93190 0.96164 0.99505 1.21008 0.97534 1.00710 0.97171 1.19778 0.95714 0.97499 0.93008 1.21210 0.93258 1.00178 1.04968 1.18663 0.97784 1.08177 0.93683 0.94793 0.94177 0.94184 0.90879 0.95319 0.92617 0.73426 0.82410 0.82637 0.82880 0.82326 0.83122 0.90756 0.87253 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 8.56 71.98 0.62 -4.68 16 2 C -0.12 -5.96 5.44 30.59 0.17 -5.80 16 3 C 0.28 14.67 2.26 44.24 0.10 14.77 16 4 H 0.01 0.76 7.45 -2.39 -0.02 0.74 16 5 C -0.55 -29.95 8.73 25.60 0.22 -29.72 16 6 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 7 C 0.02 1.10 5.29 84.66 0.45 1.54 16 8 N -0.91 -52.17 11.27 21.45 0.24 -51.93 16 9 Si 0.97 42.60 29.54 68.60 2.03 44.63 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 13 N -0.70 -31.31 4.57 -327.05 -1.50 -32.80 16 14 C 0.43 18.05 5.79 133.92 0.78 18.83 16 15 N -0.59 -25.85 7.04 -193.32 -1.36 -27.21 16 16 C 0.12 4.31 11.06 84.07 0.93 5.24 16 17 C -0.25 -7.51 9.87 22.41 0.22 -7.29 16 18 C 0.00 0.02 5.75 -21.29 -0.12 -0.10 16 19 C -0.14 -3.24 9.81 22.29 0.22 -3.02 16 20 C -0.08 -1.64 9.95 22.07 0.22 -1.42 16 21 C -0.15 -3.26 9.58 22.07 0.21 -3.05 16 22 C -0.06 -1.71 5.88 -19.87 -0.12 -1.83 16 23 C -0.14 -3.78 7.99 71.24 0.57 -3.21 16 24 C -0.18 -6.34 5.75 -21.21 -0.12 -6.46 16 25 H 0.03 1.51 5.76 -2.38 -0.01 1.49 16 26 H 0.04 1.90 7.82 -2.38 -0.02 1.88 16 27 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.07 4.08 5.93 -2.38 -0.01 4.07 16 29 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.26 14.37 8.31 -92.71 -0.77 13.59 16 31 H 0.41 16.44 2.70 -101.35 -0.27 16.17 16 32 H 0.16 4.69 8.06 -2.91 -0.02 4.66 16 33 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 34 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 35 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.15 2.37 7.92 -2.91 -0.02 2.35 16 37 H 0.07 2.18 7.08 -2.39 -0.02 2.16 16 38 H 0.11 2.10 7.86 -2.39 -0.02 2.09 16 39 H 0.07 2.28 6.50 -2.38 -0.02 2.26 16 Total: -1.00 -65.99 309.05 4.53 -61.46 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: 0.78 Total: 32.06 kcal Atomic # 6 Polarization: -30.55 SS G_CDS: 4.34 Total: -26.21 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -2.62 Total: -111.94 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -65.99 4.53 -61.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161056097.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.602 kcal (2) G-P(sol) polarization free energy of solvation -65.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds