Wall clock time and date at job start Mon Mar 30 2020 00:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.09001 * 109.53767 * 42.41236 * 3 2 1 5 5 C 1.53127 * 109.49916 * 162.50485 * 3 2 1 6 6 C 1.53116 * 109.15800 * 177.59749 * 5 3 2 7 7 C 1.53041 * 109.28074 * 302.34301 * 6 5 3 8 8 N 1.46851 * 109.52154 * 59.17885 * 7 6 5 9 9 C 1.38369 * 110.99841 * 174.15993 * 8 7 6 10 10 C 1.39707 * 119.42602 * 56.07647 * 9 8 7 11 11 C 1.36564 * 119.48980 * 179.97438 * 10 9 8 12 12 C 1.41329 * 118.40713 * 359.97438 * 11 10 9 13 13 C 1.41198 * 120.56718 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99787 * 204.89384 * 13 12 11 15 15 C 1.39870 * 120.00202 * 24.88609 * 13 12 11 16 16 N 1.30907 * 119.99911 * 14.71225 * 15 13 12 17 17 Si 1.86797 * 119.99955 * 194.70465 * 15 13 12 18 18 H 1.48505 * 109.47245 * 90.00641 * 17 15 13 19 19 H 1.48503 * 109.47042 * 209.99943 * 17 15 13 20 20 H 1.48499 * 109.47460 * 330.00407 * 17 15 13 21 21 C 1.40752 * 118.86211 * 0.02562 * 12 11 10 22 22 C 1.50694 * 119.81838 * 180.02562 * 21 12 11 23 23 N 1.31484 * 120.36531 * 359.97438 * 21 12 11 24 24 C 1.46845 * 111.19930 * 298.26470 * 8 7 6 25 25 H 4.18841 * 15.02301 * 0.02562 * 4 2 1 26 26 H 1.08996 * 109.52372 * 57.68926 * 5 3 2 27 27 H 1.08998 * 109.57446 * 297.53185 * 5 3 2 28 28 H 1.09002 * 109.50059 * 182.40800 * 6 5 3 29 29 H 1.09002 * 109.50970 * 62.28804 * 6 5 3 30 30 H 1.09001 * 109.45952 * 299.17070 * 7 6 5 31 31 H 1.08993 * 109.46681 * 179.19779 * 7 6 5 32 32 H 1.07993 * 120.25455 * 359.94486 * 10 9 8 33 33 H 1.07997 * 120.79677 * 180.02562 * 11 10 9 34 34 H 0.96995 * 119.99913 * 179.97438 * 16 15 13 35 35 H 1.09005 * 109.46656 * 269.99626 * 22 21 12 36 36 H 1.08994 * 109.47232 * 29.99086 * 22 21 12 37 37 H 1.08997 * 109.47508 * 149.99948 * 22 21 12 38 38 H 1.08998 * 109.46094 * 181.75863 * 24 8 7 39 39 H 1.09006 * 109.45847 * 301.72050 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0108 -0.7576 -0.6928 5 6 3.1565 1.3776 -0.4339 6 6 4.6864 1.3882 -0.3735 7 6 5.1385 1.0407 1.0467 8 7 4.6254 -0.2852 1.4145 9 6 5.1230 -0.6866 2.6416 10 6 4.9302 0.1280 3.7601 11 6 5.4204 -0.2672 4.9720 12 6 6.1105 -1.4981 5.0492 13 6 6.6366 -1.9504 6.2790 14 1 7.4711 -2.6359 6.2898 15 6 6.0771 -1.5107 7.4831 16 7 4.9075 -0.9227 7.4852 17 14 6.9987 -1.7627 9.0882 18 1 7.8673 -0.5870 9.3502 19 1 6.0252 -1.9160 10.1991 20 1 7.8362 -2.9852 8.9916 21 6 6.2654 -2.2647 3.8790 22 6 6.9971 -3.5808 3.9368 23 7 5.7743 -1.8393 2.7359 24 6 3.1571 -0.3066 1.4093 25 1 -1.0500 -0.0002 -0.0009 26 1 2.7601 2.1407 0.2358 27 1 2.8308 1.5831 -1.4536 28 1 5.0542 2.3790 -0.6402 29 1 5.0834 0.6517 -1.0722 30 1 4.7526 1.7853 1.7430 31 1 6.2275 1.0335 1.0897 32 1 4.3982 1.0631 3.6671 33 1 5.2831 0.3458 5.8505 34 1 4.5193 -0.6181 8.3203 35 1 8.0583 -3.4149 3.7512 36 1 6.8660 -4.0264 4.9228 37 1 6.5964 -4.2530 3.1781 38 1 2.8072 -1.2923 1.7157 39 1 2.7806 0.4444 2.1040 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167007919.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:13 Heat of formation + Delta-G solvation = 62.766168 kcal Electronic energy + Delta-G solvation = -20146.195817 eV Core-core repulsion = 17246.785413 eV Total energy + Delta-G solvation = -2899.410404 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.17842 -39.44781 -36.30392 -35.28685 -33.71225 -32.82361 -31.79468 -31.05592 -28.74995 -26.84141 -25.05579 -24.54618 -22.81280 -22.46749 -20.70771 -19.26938 -19.08964 -17.70266 -17.25925 -16.55699 -16.22047 -15.81359 -15.56235 -15.07100 -14.97697 -14.67674 -14.44706 -14.32129 -13.65424 -13.53707 -13.44087 -13.32988 -12.90301 -12.75055 -12.69114 -12.62394 -12.26322 -12.02599 -11.80727 -11.73640 -11.57629 -11.22616 -11.04997 -10.92695 -10.31366 -10.15976 -9.37006 -9.12215 -8.66467 -6.42836 0.65191 1.03829 1.39153 1.50023 1.53109 1.84172 1.91065 2.16893 2.64864 2.83480 3.48761 3.59675 3.86871 3.93226 4.04396 4.15946 4.29621 4.32377 4.51194 4.52647 4.57157 4.63211 4.76148 4.84441 4.88861 4.98295 5.01160 5.03183 5.08782 5.11940 5.15874 5.20961 5.29741 5.41247 5.45179 5.56749 5.87124 5.93536 6.17514 6.36374 6.58092 6.70096 6.73979 6.85167 7.82386 8.21714 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026578 B = 0.004486 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.233684 B = 6239.925359 C = 6518.819641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.215 4.215 3 C 0.028 3.972 4 H 0.099 0.901 5 C -0.102 4.102 6 C -0.105 4.105 7 C 0.063 3.937 8 N -0.483 5.483 9 C 0.152 3.848 10 C -0.172 4.172 11 C -0.147 4.147 12 C 0.040 3.960 13 C -0.464 4.464 14 H 0.095 0.905 15 C 0.032 3.968 16 N -0.822 5.822 17 Si 0.989 3.011 18 H -0.262 1.262 19 H -0.270 1.270 20 H -0.251 1.251 21 C -0.011 4.011 22 C -0.062 4.062 23 N -0.461 5.461 24 C 0.087 3.913 25 H 0.250 0.750 26 H 0.061 0.939 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.029 0.971 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.291 0.709 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.047 0.953 39 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.187 4.397 -8.200 9.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.216 4.216 3 C 0.010 3.990 4 H 0.117 0.883 5 C -0.140 4.140 6 C -0.143 4.143 7 C -0.064 4.064 8 N -0.205 5.205 9 C -0.078 4.078 10 C -0.195 4.195 11 C -0.173 4.173 12 C 0.035 3.965 13 C -0.493 4.493 14 H 0.113 0.887 15 C -0.183 4.183 16 N -0.447 5.447 17 Si 0.809 3.191 18 H -0.187 1.187 19 H -0.195 1.195 20 H -0.174 1.174 21 C -0.154 4.154 22 C -0.120 4.120 23 N -0.171 5.171 24 C -0.041 4.041 25 H 0.266 0.734 26 H 0.080 0.920 27 H 0.108 0.892 28 H 0.115 0.885 29 H 0.094 0.906 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.124 0.876 33 H 0.133 0.867 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -3.092 3.661 -9.156 10.334 hybrid contribution -0.479 1.018 2.380 2.632 sum -3.571 4.679 -6.776 8.976 Atomic orbital electron populations 1.25699 0.96669 0.99737 0.99082 1.23293 0.94768 1.01575 1.01917 1.18250 0.84353 1.00209 0.96226 0.88334 1.21563 0.95627 0.94161 1.02599 1.21588 0.95051 1.03001 0.94624 1.22182 0.99397 0.87293 0.97552 1.58100 1.06942 1.27701 1.27720 1.18740 1.06086 0.94303 0.88674 1.21809 1.02461 1.00529 0.94703 1.21367 1.02581 0.96955 0.96442 1.18728 0.91897 0.91390 0.94463 1.19884 1.14802 1.24454 0.90126 0.88729 1.26925 0.94489 0.91967 1.04962 1.69879 1.14644 1.28987 1.31179 0.85082 0.78628 0.80262 0.75135 1.18694 1.19458 1.17423 1.21498 1.06316 0.98989 0.88597 1.20229 0.98253 0.91730 1.01767 1.66511 1.07780 1.14539 1.28225 1.21892 0.86484 0.99611 0.96091 0.73378 0.92007 0.89164 0.88486 0.90619 0.95231 0.91970 0.87554 0.86685 0.89790 0.91828 0.91263 0.92289 0.93422 0.95750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.44 19.25 74.32 1.43 -3.00 16 2 C -0.21 -5.88 12.56 31.13 0.39 -5.49 16 3 C 0.03 0.80 2.73 -12.55 -0.03 0.76 16 4 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 5 C -0.10 -2.33 5.24 30.68 0.16 -2.17 16 6 C -0.11 -2.46 6.09 30.65 0.19 -2.28 16 7 C 0.06 2.06 5.04 86.33 0.43 2.49 16 8 N -0.48 -19.21 4.69 -701.74 -3.29 -22.50 16 9 C 0.15 7.27 5.66 133.32 0.75 8.02 16 10 C -0.17 -8.38 8.62 22.23 0.19 -8.19 16 11 C -0.15 -7.84 8.74 22.64 0.20 -7.64 16 12 C 0.04 2.13 5.59 -21.18 -0.12 2.01 16 13 C -0.46 -23.60 8.16 23.39 0.19 -23.41 16 14 H 0.09 4.50 6.84 -2.91 -0.02 4.48 16 15 C 0.03 1.55 5.22 85.23 0.45 1.99 16 16 N -0.82 -41.44 10.83 21.82 0.24 -41.21 16 17 Si 0.99 35.95 29.58 68.60 2.03 37.98 16 18 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 19 H -0.27 -9.44 7.11 99.48 0.71 -8.74 16 20 H -0.25 -8.72 7.11 99.48 0.71 -8.02 16 21 C -0.01 -0.55 6.86 43.22 0.30 -0.25 16 22 C -0.06 -2.63 9.58 71.23 0.68 -1.95 16 23 N -0.46 -23.68 10.30 -179.38 -1.85 -25.53 16 24 C 0.09 3.17 4.43 86.32 0.38 3.55 16 25 H 0.25 3.42 7.80 -4.42 -0.03 3.39 16 26 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.03 0.97 7.08 -2.39 -0.02 0.95 16 31 H 0.06 2.14 8.10 -2.39 -0.02 2.12 16 32 H 0.11 4.73 7.04 -2.91 -0.02 4.71 16 33 H 0.12 6.27 6.16 -2.91 -0.02 6.25 16 34 H 0.29 13.25 8.30 -92.71 -0.77 12.48 16 35 H 0.06 2.44 8.14 -2.38 -0.02 2.43 16 36 H 0.07 2.84 6.76 -2.39 -0.02 2.83 16 37 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.05 1.95 8.10 -2.39 -0.02 1.93 16 39 H 0.02 0.92 7.71 -2.38 -0.02 0.90 16 Total: -1.00 -61.86 321.37 3.75 -58.10 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: 1.03 Total: 28.72 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 5.59 Total: -35.56 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -4.90 Total: -89.24 kcal Atomic # 14 Polarization: 35.95 SS G_CDS: 2.03 Total: 37.98 kcal Total: -61.86 3.75 -58.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167007919.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.871 kcal (2) G-P(sol) polarization free energy of solvation -61.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds