Wall clock time and date at job start Mon Mar 30 2020 01:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 110.99999 * 2 1 4 4 C 1.53006 * 109.47278 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47228 * 179.97438 * 4 3 2 6 6 C 1.39295 * 119.99878 * 180.02562 * 5 4 3 7 7 C 1.36225 * 120.30249 * 0.02562 * 6 5 4 8 8 C 1.41184 * 120.65461 * 180.02562 * 7 6 5 9 9 C 1.41174 * 119.51519 * 180.02562 * 8 7 6 10 10 H 1.08008 * 119.99915 * 25.60263 * 9 8 7 11 11 C 1.39905 * 120.00404 * 205.60593 * 9 8 7 12 12 N 1.30852 * 119.99736 * 18.20575 * 11 9 8 13 13 Si 1.86799 * 120.00380 * 198.20612 * 11 9 8 14 14 H 1.48494 * 109.47351 * 89.99840 * 13 11 9 15 15 H 1.48505 * 109.47211 * 210.00291 * 13 11 9 16 16 H 1.48505 * 109.47147 * 330.00051 * 13 11 9 17 17 C 1.39984 * 120.97269 * 359.97438 * 8 7 6 18 18 C 1.39873 * 120.02700 * 359.97438 * 17 8 7 19 19 C 1.40849 * 121.16721 * 180.02562 * 18 17 8 20 20 C 1.36188 * 119.60386 * 180.02562 * 19 18 17 21 21 C 1.39249 * 120.95640 * 0.02562 * 20 19 18 22 22 C 1.36525 * 120.99102 * 0.24574 * 21 20 19 23 23 C 1.39878 * 119.72765 * 359.47880 * 22 21 20 24 24 H 1.09000 * 109.47385 * 300.00047 * 1 2 3 25 25 H 1.09002 * 109.47307 * 60.00279 * 1 2 3 26 26 H 1.09002 * 109.46890 * 179.97438 * 1 2 3 27 27 H 1.00898 * 111.00072 * 236.04125 * 2 1 3 28 28 H 1.09009 * 109.47292 * 60.00171 * 3 2 1 29 29 H 1.08995 * 109.47385 * 300.00172 * 3 2 1 30 30 H 1.09002 * 109.46713 * 59.99659 * 4 3 2 31 31 H 1.08995 * 109.47300 * 300.00526 * 4 3 2 32 32 H 0.97001 * 119.99698 * 0.02562 * 5 4 3 33 33 H 1.08003 * 119.67480 * 359.97438 * 7 6 5 34 34 H 0.97001 * 119.99322 * 180.02562 * 12 11 9 35 35 H 1.08011 * 119.98808 * 180.02562 * 17 8 7 36 36 H 1.07994 * 120.19767 * 0.04021 * 19 18 17 37 37 H 1.08000 * 119.52557 * 179.97438 * 20 19 18 38 38 H 1.08008 * 119.50685 * 179.97438 * 21 20 19 39 39 H 1.08004 * 120.13806 * 179.73594 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5250 1.3306 0.0006 5 7 4.0500 2.6983 0.0000 6 6 5.4258 2.9162 -0.0001 7 6 6.2886 1.8621 -0.0002 8 6 7.6844 2.0743 0.0003 9 6 8.5567 0.9643 -0.0004 10 1 8.2272 0.0188 -0.4053 11 6 9.8479 1.0890 0.5236 12 7 10.1370 2.0853 1.3212 13 14 11.1594 -0.1668 0.0847 14 1 11.8800 0.2761 -1.1358 15 1 12.1210 -0.2920 1.2094 16 1 10.5196 -1.4828 -0.1684 17 6 8.2162 3.3692 0.0002 18 6 7.3618 4.4767 -0.0008 19 6 7.8708 5.7900 -0.0014 20 6 7.0099 6.8453 -0.0018 21 6 5.6318 6.6453 -0.0012 22 6 5.1041 5.3862 0.0050 23 6 5.9563 4.2770 -0.0003 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8306 -0.5262 -0.7813 28 1 1.6460 1.8948 0.8901 29 1 1.6460 1.8948 -0.8899 30 1 3.8748 0.8071 -0.8891 31 1 3.8741 0.8074 0.8908 32 1 3.4395 3.4521 -0.0003 33 1 5.9011 0.8539 0.0003 34 1 11.0323 2.1718 1.6841 35 1 9.2866 3.5133 0.0002 36 1 8.9374 5.9592 -0.0017 37 1 7.4015 7.8517 -0.0019 38 1 4.9704 7.4992 -0.0011 39 1 4.0331 5.2471 0.0097 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167727133.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:37 Heat of formation + Delta-G solvation = 34.354443 kcal Electronic energy + Delta-G solvation = -19681.226970 eV Core-core repulsion = 16780.584541 eV Total energy + Delta-G solvation = -2900.642429 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.92540 -37.09926 -35.70696 -34.84129 -32.65737 -30.83302 -29.51161 -28.73052 -26.87141 -25.21880 -24.26586 -22.47913 -21.74464 -21.03942 -19.88801 -17.69997 -16.68140 -16.06370 -15.91957 -15.27777 -15.00612 -14.75768 -14.26894 -14.08493 -13.70420 -13.42901 -12.95518 -12.86736 -12.45617 -12.35242 -12.02819 -11.75052 -11.63588 -11.54311 -11.27887 -11.13102 -10.79105 -10.64264 -10.38996 -10.19349 -9.69145 -9.42046 -9.35797 -8.78838 -8.69019 -7.99299 -7.39115 -6.79807 -6.01238 -4.31260 1.94943 2.38981 3.01292 3.07516 3.09561 3.53134 3.67304 3.90695 4.14664 4.48589 4.87713 4.91052 5.04576 5.20631 5.29330 5.47377 5.64242 5.69735 5.76513 5.79109 5.89998 6.02322 6.10625 6.28062 6.42740 6.69032 6.71356 6.79273 6.85421 7.05216 7.10164 7.12796 7.16004 7.39819 7.48585 7.60591 7.65581 7.94036 8.11210 8.17915 8.28637 8.45325 8.68314 8.88350 8.97578 10.14284 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.012093 B = 0.006012 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.800319 B = 4656.175932 C = 6866.984618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.692 5.692 3 C 0.049 3.951 4 C 0.134 3.866 5 N -0.754 5.754 6 C 0.216 3.784 7 C -0.243 4.243 8 C 0.143 3.857 9 C -0.449 4.449 10 H 0.078 0.922 11 C 0.076 3.924 12 N -0.774 5.774 13 Si 0.907 3.093 14 H -0.267 1.267 15 H -0.277 1.277 16 H -0.262 1.262 17 C -0.245 4.245 18 C 0.025 3.975 19 C -0.146 4.146 20 C -0.111 4.111 21 C -0.209 4.209 22 C -0.069 4.069 23 C -0.167 4.167 24 H 0.064 0.936 25 H 0.021 0.979 26 H 0.068 0.932 27 H 0.344 0.656 28 H 0.076 0.924 29 H 0.033 0.967 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.388 0.612 33 H 0.099 0.901 34 H 0.282 0.718 35 H 0.118 0.882 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.704 -0.611 -2.551 11.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.323 5.323 3 C -0.081 4.081 4 C 0.009 3.991 5 N -0.386 5.386 6 C 0.116 3.884 7 C -0.269 4.269 8 C 0.139 3.861 9 C -0.478 4.478 10 H 0.097 0.903 11 C -0.144 4.144 12 N -0.398 5.398 13 Si 0.731 3.269 14 H -0.192 1.192 15 H -0.203 1.203 16 H -0.186 1.186 17 C -0.266 4.266 18 C 0.025 3.975 19 C -0.165 4.165 20 C -0.129 4.129 21 C -0.228 4.228 22 C -0.087 4.087 23 C -0.170 4.170 24 H 0.083 0.917 25 H 0.039 0.961 26 H 0.087 0.913 27 H 0.162 0.838 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.222 0.778 33 H 0.117 0.883 34 H 0.093 0.907 35 H 0.136 0.864 36 H 0.125 0.875 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.498 -0.802 -1.700 10.665 hybrid contribution 0.163 0.049 -0.949 0.964 sum -10.334 -0.752 -2.649 10.695 Atomic orbital electron populations 1.22187 0.87553 1.01921 1.00407 1.60252 1.07823 1.13907 1.50315 1.22122 0.95183 0.89877 1.00911 1.21034 0.91411 0.84927 1.01756 1.44180 1.03973 1.05772 1.84707 1.18293 0.82053 0.92791 0.95281 1.20381 0.93518 0.95626 1.17330 1.17206 0.89915 0.93228 0.85717 1.19647 0.96454 0.97711 1.33958 0.90344 1.25933 0.99507 0.96229 0.92751 1.69890 1.21576 1.28095 1.20258 0.86328 0.80132 0.81274 0.79124 1.19172 1.20253 1.18566 1.20981 0.98432 0.90305 1.16857 1.17757 0.91413 0.93434 0.94939 1.20862 0.98414 0.92284 1.04900 1.20452 0.93568 0.97524 1.01399 1.20171 0.94806 0.95867 1.11963 1.20400 0.97065 0.92727 0.98538 1.18238 0.93122 0.90056 1.15588 0.91670 0.96070 0.91291 0.83808 0.90593 0.94870 0.92848 0.91618 0.77812 0.88307 0.90742 0.86444 0.87451 0.88383 0.88543 0.88730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.70 60.07 0.64 0.89 16 2 N -0.69 -7.38 6.86 -121.13 -0.83 -8.21 16 3 C 0.05 0.56 5.80 -3.82 -0.02 0.54 16 4 C 0.13 1.97 5.16 -4.04 -0.02 1.95 16 5 N -0.75 -12.91 5.68 -57.36 -0.33 -13.24 16 6 C 0.22 4.72 6.78 -82.06 -0.56 4.17 16 7 C -0.24 -5.80 8.94 -39.19 -0.35 -6.15 16 8 C 0.14 3.77 5.55 -107.01 -0.59 3.17 16 9 C -0.45 -11.67 8.99 -37.84 -0.34 -12.01 16 10 H 0.08 1.94 7.91 -52.48 -0.42 1.53 16 11 C 0.08 1.87 5.09 -17.35 -0.09 1.78 16 12 N -0.77 -19.92 11.00 55.54 0.61 -19.31 16 13 Si 0.91 18.34 29.60 -169.99 -5.03 13.31 16 14 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 15 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 16 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 17 C -0.24 -6.49 8.39 -38.32 -0.32 -6.82 16 18 C 0.03 0.63 5.74 -106.87 -0.61 0.01 16 19 C -0.15 -3.23 9.78 -39.33 -0.38 -3.61 16 20 C -0.11 -2.19 9.95 -39.94 -0.40 -2.58 16 21 C -0.21 -3.99 9.96 -39.82 -0.40 -4.38 16 22 C -0.07 -1.37 9.54 -39.59 -0.38 -1.74 16 23 C -0.17 -3.83 5.90 -104.73 -0.62 -4.44 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.34 3.31 8.82 -39.29 -0.35 2.97 16 28 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 29 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.80 7.93 -51.93 -0.41 0.39 16 31 H 0.07 1.07 7.94 -51.93 -0.41 0.65 16 32 H 0.39 5.89 6.71 -40.82 -0.27 5.62 16 33 H 0.10 2.21 6.64 -52.48 -0.35 1.86 16 34 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 35 H 0.12 3.23 6.15 -52.48 -0.32 2.91 16 36 H 0.11 2.24 8.06 -52.49 -0.42 1.81 16 37 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.10 1.56 8.06 -52.48 -0.42 1.14 16 39 H 0.09 1.58 6.53 -52.48 -0.34 1.24 16 LS Contribution 322.54 15.07 4.86 4.86 Total: -1.00 -28.21 322.54 -10.54 -38.75 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -5.39 Total: 13.06 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: -4.44 Total: -29.22 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: -0.54 Total: -40.76 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.21 -10.54 -38.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167727133.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.105 kcal (2) G-P(sol) polarization free energy of solvation -28.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds