Wall clock time and date at job start Mon Mar 30 2020 00:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35928 * 119.50361 * 2 1 4 4 C 1.40616 * 120.00038 * 179.97438 * 3 2 1 5 5 N 1.33699 * 120.93504 * 180.02562 * 4 3 2 6 6 C 1.31070 * 121.36166 * 179.97438 * 5 4 3 7 7 C 1.39340 * 121.76574 * 359.97438 * 6 5 4 8 8 C 1.36564 * 119.91879 * 0.02562 * 7 6 5 9 9 C 1.40825 * 118.15908 * 359.97438 * 8 7 6 10 10 C 1.40292 * 121.27659 * 180.02562 * 9 8 7 11 11 C 1.37814 * 119.45423 * 179.97438 * 10 9 8 12 12 N 1.39646 * 119.71744 * 179.97438 * 11 10 9 13 13 C 1.46490 * 120.00378 * 359.97438 * 12 11 10 14 14 C 1.52999 * 109.47389 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47097 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.47141 * 179.97438 * 15 14 13 17 17 H 1.08008 * 119.99621 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00310 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99718 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99968 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47317 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47128 * 120.00199 * 20 18 16 23 23 H 1.48495 * 109.47118 * 240.00012 * 20 18 16 24 24 H 1.09005 * 109.47022 * 270.02092 * 1 2 3 25 25 H 1.09004 * 109.47533 * 30.01685 * 1 2 3 26 26 H 1.08996 * 109.47391 * 150.01636 * 1 2 3 27 27 H 1.08004 * 119.99816 * 359.96437 * 3 2 1 28 28 H 1.08000 * 119.11973 * 180.02562 * 6 5 4 29 29 H 1.08002 * 120.04153 * 179.97438 * 7 6 5 30 30 H 1.08005 * 120.92164 * 180.27133 * 8 7 6 31 31 H 1.07998 * 120.27383 * 359.95881 * 10 9 8 32 32 H 0.97001 * 119.99479 * 179.97438 * 12 11 10 33 33 H 1.09006 * 109.47015 * 300.00117 * 13 12 11 34 34 H 1.08999 * 109.47537 * 60.00339 * 13 12 11 35 35 H 1.09006 * 109.46737 * 299.99796 * 14 13 12 36 36 H 1.08998 * 109.47330 * 59.99787 * 14 13 12 37 37 H 1.09001 * 109.46928 * 299.99059 * 15 14 13 38 38 H 1.08999 * 109.47761 * 59.99888 * 15 14 13 39 39 H 0.96998 * 119.99856 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1764 1.1830 0.0000 4 6 3.5825 1.1952 0.0005 5 7 4.2598 2.3479 0.0011 6 6 5.5704 2.3691 0.0021 7 6 6.3229 1.1964 0.0032 8 6 5.6946 -0.0162 0.0027 9 6 4.2865 -0.0350 0.0016 10 6 3.5742 -1.2437 0.0016 11 6 2.1963 -1.2183 0.0011 12 7 1.4819 -2.4182 0.0006 13 6 2.1970 -3.6966 0.0000 14 6 1.1872 -4.8460 -0.0012 15 6 1.9342 -6.1812 -0.0012 16 6 0.9395 -7.3134 -0.0017 17 1 -0.1196 -7.1016 -0.0016 18 6 1.3814 -8.6194 -0.0023 19 7 2.6711 -8.8772 -0.0019 20 14 0.1485 -10.0226 -0.0022 21 1 -1.2301 -9.4703 -0.0021 22 1 0.3471 -10.8562 -1.2150 23 1 0.3481 -10.8569 1.2099 24 1 -0.3633 0.0004 1.0277 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6283 2.1136 -0.0006 28 1 6.0807 3.3209 0.0029 29 1 7.4018 1.2462 0.0036 30 1 6.2619 -0.9352 0.0079 31 1 4.1014 -2.1863 0.0018 32 1 0.5119 -2.4050 0.0006 33 1 2.8229 -3.7624 -0.8901 34 1 2.8228 -3.7633 0.8899 35 1 0.5610 -4.7804 0.8887 36 1 0.5617 -4.7792 -0.8913 37 1 2.5606 -6.2471 -0.8908 38 1 2.5594 -6.2479 0.8892 39 1 2.9820 -9.7960 -0.0027 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168434708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:11 Heat of formation + Delta-G solvation = 15.046951 kcal Electronic energy + Delta-G solvation = -19139.515493 eV Core-core repulsion = 16238.035829 eV Total energy + Delta-G solvation = -2901.479665 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.70146 -39.35199 -36.94733 -35.27792 -34.42805 -33.27810 -32.55020 -29.89899 -28.17477 -28.02985 -25.33270 -23.90103 -23.43811 -22.88921 -21.84898 -18.99347 -18.59026 -18.04497 -17.73620 -16.55478 -16.38403 -16.23157 -15.90811 -15.40554 -15.24155 -14.73069 -14.36241 -14.26774 -14.07300 -13.84796 -13.84260 -13.65620 -13.27339 -12.89577 -12.64813 -12.52948 -12.45231 -12.34051 -12.12733 -11.66824 -11.48284 -11.33879 -11.18766 -10.63564 -10.57272 -10.37554 -9.27774 -8.23484 -8.21888 -6.32644 -0.44679 0.03256 1.13103 1.39768 1.40429 1.53109 2.06215 2.36221 2.46058 3.12163 3.23787 3.45079 3.72516 3.89198 4.01167 4.10940 4.12616 4.21060 4.21899 4.31939 4.53892 4.55893 4.69888 4.78970 4.84568 4.90509 4.94253 5.00193 5.06159 5.10317 5.14622 5.24350 5.41595 5.42320 5.48947 5.67317 5.69782 5.82466 5.87614 6.18927 6.29354 6.77817 6.84778 7.07040 7.36919 8.90181 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.030700 B = 0.003157 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.827262 B = 8866.044649 C = 9746.820518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.118 4.118 3 C -0.065 4.065 4 C 0.056 3.944 5 N -0.490 5.490 6 C 0.097 3.903 7 C -0.159 4.159 8 C -0.092 4.092 9 C -0.069 4.069 10 C -0.222 4.222 11 C 0.216 3.784 12 N -0.732 5.732 13 C 0.134 3.866 14 C -0.104 4.104 15 C 0.026 3.974 16 C -0.542 4.542 17 H 0.062 0.938 18 C -0.001 4.001 19 N -0.933 5.933 20 Si 0.964 3.036 21 H -0.261 1.261 22 H -0.279 1.279 23 H -0.279 1.279 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.149 0.851 28 H 0.186 0.814 29 H 0.168 0.832 30 H 0.148 0.852 31 H 0.125 0.875 32 H 0.407 0.593 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.060 0.940 37 H -0.005 1.005 38 H -0.005 1.005 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.837 21.459 0.034 21.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.123 4.123 3 C -0.084 4.084 4 C -0.066 4.066 5 N -0.198 5.198 6 C -0.076 4.076 7 C -0.178 4.178 8 C -0.118 4.118 9 C -0.072 4.072 10 C -0.248 4.248 11 C 0.111 3.889 12 N -0.361 5.361 13 C 0.010 3.990 14 C -0.142 4.142 15 C -0.011 4.011 16 C -0.580 4.580 17 H 0.080 0.920 18 C -0.199 4.199 19 N -0.573 5.573 20 Si 0.789 3.211 21 H -0.185 1.185 22 H -0.205 1.205 23 H -0.205 1.205 24 H 0.101 0.899 25 H 0.107 0.893 26 H 0.088 0.912 27 H 0.167 0.833 28 H 0.202 0.798 29 H 0.185 0.815 30 H 0.166 0.834 31 H 0.143 0.857 32 H 0.245 0.755 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.013 0.987 38 H 0.013 0.987 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.425 21.863 0.034 21.910 hybrid contribution 0.053 -1.990 -0.001 1.990 sum 1.477 19.874 0.033 19.929 Atomic orbital electron populations 1.20808 0.88581 1.03949 1.03506 1.19544 0.97852 0.90637 1.04255 1.20624 0.91371 0.98216 0.98229 1.18971 0.94770 0.88449 1.04376 1.67916 1.10794 1.28525 1.12542 1.23392 0.89103 0.99966 0.95181 1.22196 1.03055 0.92463 1.00100 1.21717 0.92579 1.00192 0.97314 1.18750 0.95115 0.93645 0.99689 1.20609 0.92457 0.97482 1.14221 1.17878 0.91326 0.86386 0.93348 1.44922 1.08701 1.02188 1.80314 1.21287 0.95181 0.82066 1.00478 1.21569 0.97689 0.93406 1.01494 1.18923 0.95110 0.91882 0.95231 1.21709 0.93814 0.92054 1.50447 0.92007 1.25969 0.97107 1.02018 0.94781 1.70095 1.15091 1.20411 1.51685 0.85410 0.79321 0.78669 0.77720 1.18505 1.20483 1.20476 0.89905 0.89335 0.91241 0.83349 0.79757 0.81479 0.83422 0.85710 0.75517 0.92874 0.92849 0.92097 0.92100 0.98655 0.98652 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 9.53 71.24 0.68 -1.20 16 2 C -0.12 -2.81 5.86 -19.98 -0.12 -2.92 16 3 C -0.07 -1.61 9.56 22.31 0.21 -1.39 16 4 C 0.06 1.57 6.60 40.31 0.27 1.84 16 5 N -0.49 -12.78 10.34 -188.56 -1.95 -14.73 16 6 C 0.10 1.90 11.14 85.07 0.95 2.85 16 7 C -0.16 -2.83 10.03 22.14 0.22 -2.61 16 8 C -0.09 -2.06 9.89 22.51 0.22 -1.84 16 9 C -0.07 -1.93 5.74 -21.28 -0.12 -2.05 16 10 C -0.22 -6.43 9.06 22.67 0.21 -6.23 16 11 C 0.22 5.97 6.63 38.22 0.25 6.22 16 12 N -0.73 -19.99 5.62 -339.46 -1.91 -21.90 16 13 C 0.13 4.35 4.89 86.38 0.42 4.77 16 14 C -0.10 -3.93 5.27 30.59 0.16 -3.77 16 15 C 0.03 1.33 4.97 29.85 0.15 1.48 16 16 C -0.54 -30.04 9.11 25.60 0.23 -29.80 16 17 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 18 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 19 N -0.93 -55.94 13.29 21.45 0.28 -55.65 16 20 Si 0.96 43.49 29.54 68.60 2.03 45.52 16 21 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 24 H 0.08 1.24 8.14 -2.38 -0.02 1.23 16 25 H 0.09 1.19 8.07 -2.39 -0.02 1.17 16 26 H 0.07 1.13 6.49 -2.39 -0.02 1.11 16 27 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 28 H 0.19 2.20 8.06 -2.91 -0.02 2.18 16 29 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 30 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 31 H 0.12 3.62 6.67 -2.91 -0.02 3.60 16 32 H 0.41 9.62 6.40 -92.71 -0.59 9.03 16 33 H 0.05 1.78 7.93 -2.38 -0.02 1.76 16 34 H 0.05 1.79 7.93 -2.39 -0.02 1.77 16 35 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 36 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 38 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 39 H 0.26 14.83 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -67.37 326.33 3.10 -64.27 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.45 Total: 16.74 kcal Atomic # 6 Polarization: -38.45 SS G_CDS: 4.20 Total: -34.25 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -3.57 Total: -92.28 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -67.37 3.10 -64.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.318 kcal (2) G-P(sol) polarization free energy of solvation -67.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds