Wall clock time and date at job start Mon Mar 30 2020 01:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47257 * 2 1 4 4 C 1.53005 * 109.46923 * 119.99525 * 2 1 3 5 5 C 1.50696 * 109.47341 * 184.99803 * 4 2 1 6 6 C 1.38365 * 119.84487 * 89.99960 * 5 4 2 7 7 C 1.37947 * 120.14939 * 180.02562 * 6 5 4 8 8 C 1.39629 * 119.84839 * 359.97438 * 7 6 5 9 9 C 1.43205 * 120.15217 * 180.02562 * 8 7 6 10 10 N 7.49427 * 168.02368 * 98.79490 * 2 1 3 11 11 C 1.39630 * 119.69955 * 0.27680 * 8 7 6 12 12 C 1.37950 * 119.84574 * 359.48842 * 11 8 7 13 13 N 1.46892 * 109.47166 * 239.99471 * 2 1 3 14 14 C 1.47482 * 110.99901 * 155.97387 * 13 2 1 15 15 C 1.53514 * 87.93204 * 221.29866 * 14 13 2 16 16 C 1.50706 * 114.17071 * 139.67050 * 15 14 13 17 17 H 1.07998 * 120.00143 * 266.15871 * 16 15 14 18 18 C 1.37877 * 120.00025 * 86.15888 * 16 15 14 19 19 N 1.31526 * 119.99895 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00135 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47416 * 59.99851 * 20 18 16 22 22 H 1.48508 * 109.47169 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47012 * 299.99898 * 20 18 16 24 24 C 1.47485 * 111.00087 * 60.00790 * 13 2 1 25 25 H 1.08998 * 109.47439 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47085 * 300.00459 * 1 2 3 27 27 H 1.08998 * 109.46869 * 59.99889 * 1 2 3 28 28 H 1.09004 * 109.46901 * 64.99972 * 4 2 1 29 29 H 1.08995 * 109.47305 * 305.00219 * 4 2 1 30 30 H 1.07993 * 119.92704 * 0.02562 * 6 5 4 31 31 H 1.08003 * 120.07687 * 179.97438 * 7 6 5 32 32 H 1.07999 * 120.08247 * 179.72334 * 11 8 7 33 33 H 1.08002 * 119.92796 * 180.22906 * 12 11 8 34 34 H 1.09005 * 113.47883 * 336.06525 * 14 13 2 35 35 H 1.09004 * 113.47820 * 106.53394 * 14 13 2 36 36 H 1.08997 * 114.17385 * 272.37502 * 15 14 13 37 37 H 0.97000 * 119.99542 * 180.02562 * 19 18 16 38 38 H 1.09005 * 113.46936 * 253.46938 * 24 13 2 39 39 H 1.09002 * 113.47644 * 23.86990 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5418 -0.6149 1.3129 6 6 4.1295 0.4516 1.9698 7 6 5.5037 0.5554 2.0313 8 6 6.3019 -0.4193 1.4293 9 6 7.7291 -0.3183 1.4896 10 7 8.8612 -0.2378 1.5368 11 6 5.7022 -1.4902 0.7635 12 6 4.3268 -1.5842 0.7138 13 7 2.0197 -0.6926 -1.1993 14 6 3.3815 -0.2466 -1.5481 15 6 2.9447 -0.2471 -3.0198 16 6 3.4687 0.9180 -3.8194 17 1 2.8689 1.8090 -3.9319 18 6 4.7138 0.8463 -4.4072 19 7 5.4444 -0.2387 -4.2698 20 14 5.3636 2.2906 -5.3977 21 1 5.4465 3.4906 -4.5270 22 1 6.7143 1.9640 -5.9213 23 1 4.4462 2.5651 -6.5327 24 6 1.5469 -0.0238 -2.4259 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.7516 -1.7715 1.2057 29 1 1.6053 -0.2616 2.1370 30 1 3.5110 1.2046 2.4354 31 1 5.9612 1.3887 2.5441 32 1 6.3136 -2.2452 0.2918 33 1 3.8615 -2.4139 0.2023 34 1 3.6244 0.7455 -1.1676 35 1 4.1512 -0.9851 -1.3234 36 1 3.0683 -1.2067 -3.5218 37 1 6.3206 -0.2889 -4.6830 38 1 0.7617 -0.5735 -2.9449 39 1 1.2992 1.0275 -2.2793 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172309208.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:33 Heat of formation + Delta-G solvation = 82.538351 kcal Electronic energy + Delta-G solvation = -20412.592144 eV Core-core repulsion = 17514.039126 eV Total energy + Delta-G solvation = -2898.553018 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.01224 -38.65172 -36.35816 -34.39133 -32.40119 -31.22754 -30.94892 -27.32622 -26.96370 -24.61922 -23.88403 -22.61480 -22.29171 -19.91464 -18.80136 -18.62330 -16.56515 -15.75620 -15.51274 -15.00594 -14.57553 -14.41997 -14.19739 -13.77097 -13.63114 -13.38846 -13.32681 -12.73824 -12.58946 -12.27116 -12.14032 -11.83510 -11.71028 -11.52737 -11.25617 -11.20234 -10.94063 -10.84261 -10.75665 -10.55261 -10.20671 -9.74420 -9.15084 -9.08571 -8.66564 -8.52578 -8.32138 -7.91756 -6.04660 -4.08171 0.93097 1.52339 2.80182 3.09556 3.30109 3.36047 3.37436 3.98309 4.09227 4.40498 4.76908 4.86173 4.98833 5.03156 5.21235 5.30673 5.44591 5.47475 5.56295 5.66350 5.79655 5.87749 5.96271 5.99137 6.11831 6.12764 6.20457 6.35302 6.41000 6.44407 6.46615 6.57352 6.69523 6.72813 6.82123 6.98515 7.17609 7.21240 7.61712 7.73207 7.92385 8.10283 8.38814 8.93800 9.56430 11.04674 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.011640 B = 0.007911 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.851537 B = 3538.466168 C = 5389.453442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 H 0.045 0.955 4 C -0.072 4.072 5 C -0.045 4.045 6 C -0.123 4.123 7 C -0.074 4.074 8 C -0.039 4.039 9 C 0.263 3.737 10 N -0.433 5.433 11 C -0.066 4.066 12 C -0.090 4.090 13 N -0.478 5.478 14 C 0.007 3.993 15 C 0.038 3.962 16 C -0.516 4.516 17 H 0.055 0.945 18 C 0.069 3.931 19 N -0.884 5.884 20 Si 0.887 3.113 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.003 4.003 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.261 0.739 38 H 0.059 0.941 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.724 -1.192 12.795 14.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.061 4.061 3 H 0.063 0.937 4 C -0.110 4.110 5 C -0.046 4.046 6 C -0.141 4.141 7 C -0.094 4.094 8 C -0.043 4.043 9 C -0.052 4.052 10 N -0.108 5.108 11 C -0.087 4.087 12 C -0.108 4.108 13 N -0.201 5.201 14 C -0.122 4.122 15 C 0.019 3.981 16 C -0.554 4.554 17 H 0.073 0.927 18 C -0.134 4.134 19 N -0.521 5.521 20 Si 0.715 3.285 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.132 4.132 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.149 0.851 33 H 0.155 0.845 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.945 -1.855 12.986 14.019 hybrid contribution 0.205 1.809 -0.692 1.947 sum -4.740 -0.046 12.294 13.177 Atomic orbital electron populations 1.21823 0.94885 1.02108 1.01302 1.22184 0.95049 0.96263 0.92563 0.93683 1.20688 0.90400 1.02349 0.97516 1.20107 0.96240 0.93641 0.94625 1.20891 0.94015 0.98308 1.00900 1.21013 0.93524 0.97035 0.97872 1.15955 0.84123 0.98997 1.05187 1.25805 0.92795 0.93365 0.93187 1.81196 1.12163 1.08226 1.09227 1.21161 0.95246 0.96347 0.95932 1.21015 0.92571 0.99696 0.97559 1.68931 1.06762 1.44529 0.99907 1.24226 0.90175 0.97685 1.00072 1.20117 0.88537 0.98101 0.91311 1.20975 1.01605 1.00566 1.32287 0.92694 1.24973 0.96969 0.95623 0.95823 1.69942 1.11266 1.26871 1.44057 0.86748 0.78117 0.83076 0.80610 1.20293 1.21259 1.20182 1.23934 1.00865 0.96317 0.92037 0.92155 0.92992 0.92444 0.90073 0.91044 0.85547 0.85576 0.85143 0.84491 0.93241 0.90943 0.91988 0.92888 0.92281 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.09 37.16 0.34 -1.44 16 2 C 0.05 0.71 1.98 -67.71 -0.13 0.57 16 3 H 0.05 0.71 7.52 -51.93 -0.39 0.32 16 4 C -0.07 -0.86 5.02 -27.88 -0.14 -1.00 16 5 C -0.05 -0.58 4.09 -104.53 -0.43 -1.01 16 6 C -0.12 -1.46 9.68 -39.64 -0.38 -1.85 16 7 C -0.07 -0.91 9.76 -39.17 -0.38 -1.29 16 8 C -0.04 -0.55 5.73 -106.93 -0.61 -1.16 16 9 C 0.26 4.07 15.33 -22.47 -0.34 3.72 16 10 N -0.43 -7.47 18.54 41.83 0.78 -6.70 16 11 C -0.07 -0.92 9.62 -39.17 -0.38 -1.30 16 12 C -0.09 -1.25 6.19 -39.64 -0.25 -1.49 16 13 N -0.48 -8.52 6.04 -236.60 -1.43 -9.95 16 14 C 0.01 0.14 5.03 -7.55 -0.04 0.11 16 15 C 0.04 0.92 3.77 -91.24 -0.34 0.58 16 16 C -0.52 -13.75 8.82 -34.44 -0.30 -14.05 16 17 H 0.05 1.45 7.81 -52.49 -0.41 1.04 16 18 C 0.07 1.88 5.46 -17.81 -0.10 1.79 16 19 N -0.88 -25.07 13.26 55.43 0.74 -24.34 16 20 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.00 -0.06 6.01 -7.55 -0.05 -0.10 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.76 7.03 -51.93 -0.37 0.39 16 28 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 29 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 30 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 32 H 0.13 1.70 8.06 -52.49 -0.42 1.27 16 33 H 0.14 1.88 7.96 -52.49 -0.42 1.46 16 34 H 0.05 1.10 7.49 -51.93 -0.39 0.71 16 35 H 0.07 1.55 5.40 -51.93 -0.28 1.27 16 36 H 0.06 1.64 8.11 -51.93 -0.42 1.22 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.05 1.02 7.61 -51.93 -0.40 0.63 16 LS Contribution 326.27 15.07 4.92 4.92 Total: -1.00 -28.72 326.27 -9.14 -37.86 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -5.58 Total: 0.06 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -3.54 Total: -17.93 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.08 Total: -40.99 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.72 -9.14 -37.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172309208.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.399 kcal (2) G-P(sol) polarization free energy of solvation -28.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds