Wall clock time and date at job start Mon Mar 30 2020 01:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36938 * 119.99650 * 2 1 4 4 H 1.08004 * 119.99992 * 202.20598 * 3 2 1 5 5 C 1.38811 * 120.00262 * 22.19785 * 3 2 1 6 6 N 1.31617 * 119.99928 * 11.08301 * 5 3 2 7 7 Si 1.86797 * 120.00128 * 191.08034 * 5 3 2 8 8 H 1.48500 * 109.47213 * 64.99812 * 7 5 3 9 9 H 1.48503 * 109.47195 * 185.00225 * 7 5 3 10 10 H 1.48506 * 109.46897 * 305.00020 * 7 5 3 11 11 C 1.46498 * 120.00256 * 180.02562 * 2 1 3 12 12 C 1.50703 * 109.46813 * 264.55752 * 11 2 1 13 13 C 1.34853 * 125.89150 * 265.38131 * 12 11 2 14 14 C 1.40884 * 107.41436 * 180.25582 * 13 12 11 15 15 C 1.34852 * 107.42077 * 359.73867 * 14 13 12 16 16 N 1.36336 * 108.21861 * 359.97438 * 15 14 13 17 17 C 1.46500 * 125.63851 * 180.02562 * 16 15 14 18 18 C 1.50693 * 109.47238 * 266.95607 * 17 16 15 19 19 C 1.38243 * 119.99934 * 83.76862 * 18 17 16 20 20 C 1.38232 * 119.99979 * 179.97438 * 19 18 17 21 21 C 1.38234 * 119.99829 * 359.97438 * 20 19 18 22 22 C 1.38238 * 120.00531 * 0.26807 * 21 20 19 23 23 C 1.38229 * 120.00185 * 263.79255 * 18 17 16 24 24 H 1.09002 * 109.46994 * 273.55227 * 1 2 3 25 25 H 1.09001 * 109.47647 * 33.55576 * 1 2 3 26 26 H 1.09000 * 109.47088 * 153.55649 * 1 2 3 27 27 H 0.96999 * 120.00586 * 179.97438 * 6 5 3 28 28 H 1.08995 * 109.47121 * 144.55909 * 11 2 1 29 29 H 1.09004 * 109.46827 * 24.55318 * 11 2 1 30 30 H 1.08005 * 126.28605 * 359.97438 * 13 12 11 31 31 H 1.08001 * 126.28881 * 179.73829 * 14 13 12 32 32 H 1.07999 * 125.88689 * 180.02562 * 15 14 13 33 33 H 1.08998 * 109.47147 * 146.95280 * 17 16 15 34 34 H 1.09006 * 109.46955 * 26.95584 * 17 16 15 35 35 H 1.07994 * 119.99739 * 0.02562 * 19 18 17 36 36 H 1.07994 * 119.99891 * 179.97438 * 20 19 18 37 37 H 1.08003 * 119.99954 * 180.02562 * 21 20 19 38 38 H 1.07995 * 120.00274 * 179.72950 * 22 21 20 39 39 H 1.08000 * 119.99938 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1696 1.2207 -0.3535 5 6 1.5327 2.3435 0.4542 6 7 0.3791 2.2709 1.0837 7 14 2.3398 4.0044 0.1720 8 1 2.3941 4.2872 -1.2848 9 1 1.5487 5.0611 0.8523 10 1 3.7182 3.9851 0.7243 11 6 2.1976 -1.2687 -0.0006 12 6 2.5654 -1.6369 1.4137 13 6 3.7362 -1.3612 2.0234 14 6 3.6650 -1.8845 3.3295 15 6 2.4512 -2.4550 3.4702 16 7 1.7703 -2.3025 2.2990 17 6 0.4112 -2.7807 2.0333 18 6 0.4740 -4.1497 1.4065 19 6 0.5959 -5.2710 2.2060 20 6 0.6529 -6.5268 1.6311 21 6 0.5874 -6.6615 0.2569 22 6 0.4706 -5.5400 -0.5428 23 6 0.4101 -4.2844 0.0323 24 1 -0.3633 0.0637 1.0257 25 1 -0.3634 0.8564 -0.5680 26 1 -0.3633 -0.9201 -0.4576 27 1 -0.0519 3.0797 1.4014 28 1 3.1043 -1.1644 -0.5964 29 1 1.5697 -2.0505 -0.4280 30 1 4.5760 -0.8394 1.5886 31 1 4.4401 -1.8374 4.0801 32 1 2.0820 -2.9470 4.3579 33 1 -0.0897 -2.0922 1.3528 34 1 -0.1444 -2.8349 2.9695 35 1 0.6458 -5.1658 3.2796 36 1 0.7486 -7.4027 2.2556 37 1 0.6316 -7.6427 -0.1923 38 1 0.4238 -5.6449 -1.6167 39 1 0.3148 -3.4084 -0.5922 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232234265.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:21 Heat of formation + Delta-G solvation = 88.068038 kcal Electronic energy + Delta-G solvation = -20606.592083 eV Core-core repulsion = 17708.278850 eV Total energy + Delta-G solvation = -2898.313233 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.04372 -39.93476 -37.38169 -34.72868 -33.50089 -31.81944 -31.15894 -30.55418 -27.96832 -26.87478 -26.61002 -23.61535 -23.12549 -22.48341 -21.20412 -19.88979 -18.73571 -18.04110 -17.54405 -16.71933 -16.38872 -16.08771 -15.58728 -15.42656 -14.85086 -14.67425 -14.42777 -14.31313 -14.10344 -13.62051 -13.38014 -13.26789 -13.01079 -12.93319 -12.81065 -12.74286 -12.52942 -12.13412 -12.02570 -11.97091 -11.90881 -11.67411 -10.62852 -9.82594 -9.78534 -9.31406 -8.92844 -8.62699 -7.82489 -5.28746 0.32536 0.49438 1.45249 1.47519 1.52928 1.56871 2.26366 2.29955 2.54405 2.96996 3.34362 3.72286 3.73481 3.85899 4.06979 4.15413 4.22856 4.27711 4.42779 4.47688 4.52130 4.65173 4.67932 4.73909 4.84805 4.91358 4.95977 5.05355 5.14939 5.29950 5.53943 5.54637 5.58321 5.60479 5.61481 5.66930 5.70846 6.09120 6.31893 6.33846 6.54690 6.74149 7.16382 7.85106 8.28167 9.21558 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.025231 B = 0.005461 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.460864 B = 5126.270233 C = 5651.354683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.604 5.604 3 C -0.253 4.253 4 H 0.068 0.932 5 C -0.050 4.050 6 N -0.939 5.939 7 Si 0.966 3.034 8 H -0.277 1.277 9 H -0.295 1.295 10 H -0.279 1.279 11 C 0.207 3.793 12 C 0.016 3.984 13 C -0.230 4.230 14 C -0.220 4.220 15 C -0.028 4.028 16 N -0.433 5.433 17 C 0.141 3.859 18 C -0.115 4.115 19 C -0.109 4.109 20 C -0.125 4.125 21 C -0.117 4.117 22 C -0.126 4.126 23 C -0.118 4.118 24 H 0.000 1.000 25 H 0.022 0.978 26 H 0.028 0.972 27 H 0.246 0.754 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.115 0.885 31 H 0.142 0.858 32 H 0.184 0.816 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.132 0.868 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.141 0.859 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.916 -18.394 0.876 18.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.326 5.326 3 C -0.384 4.384 4 H 0.086 0.914 5 C -0.244 4.244 6 N -0.586 5.586 7 Si 0.794 3.206 8 H -0.203 1.203 9 H -0.222 1.222 10 H -0.205 1.205 11 C 0.081 3.919 12 C -0.099 4.099 13 C -0.255 4.255 14 C -0.245 4.245 15 C -0.157 4.157 16 N -0.108 5.108 17 C 0.020 3.980 18 C -0.116 4.116 19 C -0.127 4.127 20 C -0.143 4.143 21 C -0.135 4.135 22 C -0.144 4.144 23 C -0.137 4.137 24 H 0.018 0.982 25 H 0.041 0.959 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.133 0.867 31 H 0.160 0.840 32 H 0.201 0.799 33 H 0.100 0.900 34 H 0.124 0.876 35 H 0.150 0.850 36 H 0.165 0.835 37 H 0.167 0.833 38 H 0.159 0.841 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.391 -18.359 0.842 18.431 hybrid contribution 0.376 1.578 0.202 1.635 sum -1.014 -16.781 1.044 16.844 Atomic orbital electron populations 1.20567 0.82460 0.96015 0.97232 1.44240 1.02009 1.01079 1.85276 1.19430 0.97956 0.86246 1.34722 0.91420 1.25709 0.98404 1.01628 0.98693 1.70210 1.18947 1.27279 1.42178 0.85358 0.77676 0.79768 0.77767 1.20277 1.22160 1.20492 1.19608 0.96362 0.87355 0.88624 1.21732 0.91546 1.00365 0.96213 1.20713 0.98803 1.09179 0.96830 1.20987 0.98771 1.07119 0.97630 1.22072 0.93820 1.08648 0.91168 1.44043 1.12422 1.43354 1.11009 1.20778 0.81659 0.92940 1.02614 1.20016 1.02732 0.94385 0.94460 1.21228 0.98987 0.92249 1.00286 1.21462 0.99632 0.97469 0.95694 1.21550 0.98516 0.99522 0.93908 1.21419 0.99821 0.92034 1.01143 1.21262 0.99723 0.98477 0.94240 0.98196 0.95928 0.95320 0.94492 0.92112 0.91378 0.86652 0.84000 0.79926 0.89962 0.87607 0.85008 0.83456 0.83337 0.84127 0.86720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.93 7.62 127.77 0.97 9.90 16 2 N -0.60 -30.61 2.92 -731.30 -2.14 -32.74 16 3 C -0.25 -14.23 9.66 84.03 0.81 -13.42 16 4 H 0.07 3.74 7.85 -2.91 -0.02 3.72 16 5 C -0.05 -2.85 5.13 84.86 0.44 -2.41 16 6 N -0.94 -56.52 10.57 21.65 0.23 -56.29 16 7 Si 0.97 46.45 29.57 68.60 2.03 48.48 16 8 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 9 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 11 C 0.21 8.84 5.69 85.63 0.49 9.33 16 12 C 0.02 0.70 6.43 41.08 0.26 0.96 16 13 C -0.23 -9.90 10.76 22.14 0.24 -9.66 16 14 C -0.22 -8.24 10.86 22.14 0.24 -8.00 16 15 C -0.03 -0.94 11.43 83.21 0.95 0.01 16 16 N -0.43 -15.92 2.73 -514.02 -1.40 -17.32 16 17 C 0.14 4.39 5.86 85.63 0.50 4.90 16 18 C -0.12 -3.08 5.46 -19.87 -0.11 -3.18 16 19 C -0.11 -2.42 9.73 22.27 0.22 -2.21 16 20 C -0.12 -2.30 10.05 22.27 0.22 -2.08 16 21 C -0.12 -2.10 10.05 22.27 0.22 -1.87 16 22 C -0.13 -2.65 10.05 22.27 0.22 -2.43 16 23 C -0.12 -3.09 9.08 22.27 0.20 -2.88 16 24 H 0.00 -0.01 7.15 -2.39 -0.02 -0.03 16 25 H 0.02 1.20 7.12 -2.39 -0.02 1.18 16 26 H 0.03 1.17 7.43 -2.39 -0.02 1.15 16 27 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 28 H 0.06 2.56 8.08 -2.39 -0.02 2.55 16 29 H 0.07 2.55 5.17 -2.38 -0.01 2.54 16 30 H 0.12 4.97 8.06 -2.91 -0.02 4.94 16 31 H 0.14 4.56 8.06 -2.91 -0.02 4.53 16 32 H 0.18 4.69 8.06 -2.91 -0.02 4.67 16 33 H 0.08 2.90 5.49 -2.39 -0.01 2.89 16 34 H 0.11 2.84 8.11 -2.38 -0.02 2.82 16 35 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 36 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 37 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 38 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 39 H 0.11 3.15 6.35 -2.91 -0.02 3.14 16 Total: -1.00 -68.48 322.46 5.63 -62.85 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 1.03 Total: 18.08 kcal Atomic # 6 Polarization: -28.94 SS G_CDS: 5.89 Total: -23.05 kcal Atomic # 7 Polarization: -103.05 SS G_CDS: -3.31 Total: -106.36 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -68.48 5.63 -62.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232234265.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.918 kcal (2) G-P(sol) polarization free energy of solvation -68.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds