Wall clock time and date at job start Mon Mar 30 2020 01:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47445 * 2 1 4 4 C 1.52998 * 109.46916 * 239.99914 * 2 1 3 5 5 N 1.46493 * 109.47317 * 294.99873 * 4 2 1 6 6 C 1.34695 * 125.81371 * 125.00129 * 5 4 2 7 7 C 1.37861 * 107.39408 * 179.97438 * 6 5 4 8 8 C 1.47998 * 126.36657 * 180.02562 * 7 6 5 9 9 C 1.39946 * 119.88563 * 359.72412 * 8 7 6 10 10 C 1.36231 * 120.12213 * 179.71458 * 9 8 7 11 11 C 1.40946 * 119.87745 * 0.55816 * 10 9 8 12 12 C 1.41014 * 120.11676 * 179.69504 * 11 10 9 13 13 H 1.08005 * 119.99767 * 204.70223 * 12 11 10 14 14 C 1.39934 * 120.00293 * 24.70051 * 12 11 10 15 15 N 1.30846 * 120.00090 * 17.97594 * 14 12 11 16 16 Si 1.86803 * 120.00272 * 197.97406 * 14 12 11 17 17 H 1.48505 * 109.47081 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47442 * 119.99895 * 16 14 12 19 19 H 1.48500 * 109.47038 * 239.99914 * 16 14 12 20 20 C 1.40940 * 119.76419 * 359.71972 * 11 10 9 21 21 C 1.36235 * 119.87928 * 359.97438 * 20 11 10 22 22 C 1.41097 * 107.26521 * 359.97438 * 7 6 5 23 23 N 1.30550 * 108.11655 * 359.75589 * 22 7 6 24 24 H 1.09004 * 109.47348 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46792 * 299.99962 * 1 2 3 26 26 H 1.09000 * 109.47555 * 59.99522 * 1 2 3 27 27 H 1.09008 * 109.47411 * 120.00196 * 2 1 3 28 28 H 1.09009 * 109.46941 * 59.99748 * 3 2 1 29 29 H 1.08999 * 109.47224 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47134 * 300.00735 * 3 2 1 31 31 H 1.09004 * 109.47239 * 55.00038 * 4 2 1 32 32 H 1.09002 * 109.47288 * 174.99970 * 4 2 1 33 33 H 1.08004 * 126.30843 * 359.93936 * 6 5 4 34 34 H 1.08002 * 119.93870 * 0.02562 * 9 8 7 35 35 H 1.08004 * 120.06202 * 180.25038 * 10 9 8 36 36 H 0.97003 * 120.00505 * 180.02562 * 15 14 12 37 37 H 1.08001 * 120.05695 * 179.97438 * 20 11 10 38 38 H 1.07997 * 119.94086 * 180.02562 * 21 20 11 39 39 H 1.08000 * 125.93849 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 1.6524 -2.1328 -1.1906 6 6 0.9594 -2.7997 -2.1336 7 6 0.8071 -4.0971 -1.6928 8 6 0.1094 -5.1901 -2.4061 9 6 -0.4791 -4.9454 -3.6521 10 6 -1.1175 -5.9495 -4.3156 11 6 -1.1949 -7.2336 -3.7396 12 6 -1.8601 -8.2749 -4.4191 13 1 -2.2709 -9.1056 -3.8644 14 6 -1.9879 -8.2320 -5.8119 15 7 -1.2146 -7.4456 -6.5159 16 14 -3.2624 -9.2974 -6.6662 17 1 -4.0037 -10.0909 -5.6532 18 1 -4.2127 -8.4321 -7.4101 19 1 -2.5837 -10.2168 -7.6146 20 6 -0.6055 -7.4729 -2.4819 21 6 0.0359 -6.4634 -1.8298 22 6 1.4411 -4.1894 -0.4357 23 7 1.9449 -3.0198 -0.1482 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6053 -0.2618 -2.1370 32 1 3.1262 -0.6444 -1.2952 33 1 0.5905 -2.3930 -3.0636 34 1 -0.4227 -3.9601 -4.0907 35 1 -1.5678 -5.7606 -5.2789 36 1 -1.3034 -7.4155 -7.4814 37 1 -0.6623 -8.4550 -2.0360 38 1 0.4883 -6.6458 -0.8662 39 1 1.5030 -5.0749 0.1796 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240881045.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:59 Heat of formation + Delta-G solvation = 73.313067 kcal Electronic energy + Delta-G solvation = -19392.441211 eV Core-core repulsion = 16493.488155 eV Total energy + Delta-G solvation = -2898.953056 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.60980 -37.46991 -36.40754 -33.82097 -31.79184 -30.78705 -29.39180 -28.43957 -27.35120 -26.35160 -24.54385 -21.73873 -21.39441 -20.66443 -19.40779 -19.10852 -17.33628 -16.82846 -15.57263 -15.23651 -14.78770 -14.39679 -14.14536 -13.73870 -13.45036 -13.28548 -12.87017 -12.62064 -12.50232 -12.31941 -12.13819 -11.82669 -11.66128 -11.47067 -11.20222 -11.14462 -11.06428 -10.96496 -10.69087 -10.59770 -10.16551 -9.57993 -9.35918 -9.23164 -8.94829 -8.38575 -7.51202 -6.87913 -6.70660 -4.29239 2.18793 2.65435 2.87489 3.02138 3.05869 3.11586 3.15802 3.80645 3.90930 4.43806 4.65759 4.71983 4.83487 5.05323 5.23986 5.35249 5.39617 5.44803 5.53020 5.65629 5.71461 5.76909 5.86247 6.04267 6.13444 6.17962 6.21157 6.34656 6.36172 6.48569 6.94984 7.05165 7.15285 7.30163 7.36387 7.48918 7.64087 7.95493 8.05630 8.11462 8.27388 8.28960 8.62348 8.86786 8.98016 10.13567 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.039862 B = 0.003412 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.259698 B = 8204.649206 C = 8562.380722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.145 4.145 4 C 0.143 3.857 5 N -0.373 5.373 6 C 0.016 3.984 7 C -0.133 4.133 8 C -0.149 4.149 9 C -0.088 4.088 10 C -0.167 4.167 11 C 0.111 3.889 12 C -0.456 4.456 13 H 0.079 0.921 14 C 0.075 3.925 15 N -0.788 5.788 16 Si 0.907 3.093 17 H -0.260 1.260 18 H -0.272 1.272 19 H -0.274 1.274 20 C -0.225 4.225 21 C -0.075 4.075 22 C 0.041 3.959 23 N -0.308 5.308 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.166 0.834 34 H 0.085 0.915 35 H 0.117 0.883 36 H 0.281 0.719 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.238 12.421 6.136 14.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.203 4.203 4 C 0.021 3.979 5 N -0.156 5.156 6 C -0.128 4.128 7 C -0.143 4.143 8 C -0.151 4.151 9 C -0.107 4.107 10 C -0.186 4.186 11 C 0.109 3.891 12 C -0.485 4.485 13 H 0.097 0.903 14 C -0.144 4.144 15 N -0.413 5.413 16 Si 0.732 3.268 17 H -0.183 1.183 18 H -0.197 1.197 19 H -0.200 1.200 20 C -0.245 4.245 21 C -0.094 4.094 22 C -0.145 4.145 23 N -0.129 5.129 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.183 0.817 34 H 0.103 0.897 35 H 0.134 0.866 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 3.991 13.308 6.716 15.432 hybrid contribution -0.942 -0.952 -1.224 1.814 sum 3.049 12.356 5.493 13.861 Atomic orbital electron populations 1.21807 0.94602 1.02410 1.01512 1.21417 0.96738 0.96025 0.98607 1.21790 1.01068 0.95233 1.02182 1.21671 1.00454 0.76447 0.99318 1.48109 1.43795 1.08700 1.15038 1.22650 1.00947 0.93219 0.95962 1.19393 1.05908 0.93255 0.95757 1.17450 1.09150 0.91900 0.96627 1.20381 0.98880 0.97331 0.94072 1.20960 1.04244 0.92352 1.01029 1.17668 0.88385 0.92343 0.90745 1.19619 1.31141 1.06234 0.91478 0.90302 1.25947 0.95003 0.95364 0.98045 1.69853 1.30990 1.32431 1.07994 0.86277 0.80940 0.80139 0.79490 1.18333 1.19672 1.19973 1.20661 1.06974 0.97580 0.99283 1.20240 0.98925 0.92666 0.97533 1.23854 0.98228 0.95744 0.96658 1.76895 1.24618 1.00511 1.10916 0.92252 0.92644 0.92795 0.89731 0.92155 0.92440 0.92482 0.89183 0.90477 0.81685 0.89716 0.86561 0.90857 0.88969 0.89354 0.80653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.08 37.15 0.34 -1.22 16 2 C -0.11 -1.09 3.00 -90.62 -0.27 -1.37 16 3 C -0.14 -1.08 9.19 37.16 0.34 -0.73 16 4 C 0.14 1.58 5.88 -4.05 -0.02 1.56 16 5 N -0.37 -5.74 3.11 -60.75 -0.19 -5.93 16 6 C 0.02 0.27 10.88 -16.43 -0.18 0.10 16 7 C -0.13 -2.58 6.08 -104.95 -0.64 -3.22 16 8 C -0.15 -3.32 5.90 -104.61 -0.62 -3.94 16 9 C -0.09 -2.04 9.50 -39.66 -0.38 -2.42 16 10 C -0.17 -4.27 8.63 -39.28 -0.34 -4.61 16 11 C 0.11 2.94 5.57 -106.80 -0.60 2.34 16 12 C -0.46 -11.93 9.03 -37.90 -0.34 -12.28 16 13 H 0.08 1.99 7.91 -52.48 -0.42 1.57 16 14 C 0.07 1.85 5.13 -17.34 -0.09 1.76 16 15 N -0.79 -20.05 10.96 55.55 0.61 -19.45 16 16 Si 0.91 18.33 29.60 -169.99 -5.03 13.30 16 17 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 18 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 19 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 20 C -0.23 -5.51 9.73 -39.28 -0.38 -5.89 16 21 C -0.08 -1.69 9.51 -39.66 -0.38 -2.07 16 22 C 0.04 0.73 11.42 -17.01 -0.19 0.54 16 23 N -0.31 -5.33 12.27 30.84 0.38 -4.95 16 24 H 0.06 0.80 7.75 -51.93 -0.40 0.40 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.08 1.00 8.05 -51.92 -0.42 0.58 16 28 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.82 8.06 -51.93 -0.42 0.40 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.17 2.45 7.30 -52.48 -0.38 2.06 16 34 H 0.08 1.75 7.01 -52.49 -0.37 1.38 16 35 H 0.12 3.07 6.16 -52.48 -0.32 2.74 16 36 H 0.28 6.45 8.30 -40.82 -0.34 6.12 16 37 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 38 H 0.09 1.73 7.03 -52.49 -0.37 1.36 16 39 H 0.18 2.77 7.34 -52.49 -0.39 2.39 16 LS Contribution 327.62 15.07 4.94 4.94 Total: -1.00 -28.58 327.62 -8.62 -37.20 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -5.58 Total: 6.33 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: -3.75 Total: -31.45 kcal Atomic # 7 Polarization: -31.12 SS G_CDS: 0.80 Total: -30.33 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.58 -8.62 -37.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240881045.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.514 kcal (2) G-P(sol) polarization free energy of solvation -28.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds