Wall clock time and date at job start Mon Mar 30 2020 01:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47673 * 2 1 4 4 C 1.52999 * 109.47321 * 239.99919 * 2 1 3 5 5 N 1.46496 * 109.47331 * 185.00490 * 4 2 1 6 6 C 1.34826 * 125.89449 * 125.00527 * 5 4 2 7 7 C 1.36433 * 107.61092 * 180.02562 * 6 5 4 8 8 C 1.48493 * 126.22191 * 179.97438 * 7 6 5 9 9 C 1.39697 * 119.99327 * 359.72084 * 8 7 6 10 10 C 1.38401 * 120.37803 * 179.76782 * 9 8 7 11 11 C 1.37718 * 120.37159 * 0.50629 * 10 9 8 12 12 C 1.40745 * 119.98398 * 359.75105 * 11 10 9 13 13 C 1.41423 * 120.18944 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99832 * 204.47650 * 13 12 11 15 15 C 1.39926 * 119.99996 * 24.48344 * 13 12 11 16 16 N 1.30832 * 120.00231 * 17.89091 * 15 13 12 17 17 Si 1.86802 * 119.99779 * 197.90258 * 15 13 12 18 18 H 1.48492 * 109.47441 * 89.99773 * 17 15 13 19 19 H 1.48509 * 109.46914 * 209.99704 * 17 15 13 20 20 H 1.48497 * 109.47141 * 329.99079 * 17 15 13 21 21 C 1.38690 * 119.99183 * 179.97438 * 8 7 6 22 22 C 1.40842 * 107.55545 * 359.97438 * 7 6 5 23 23 N 1.30672 * 108.09862 * 359.71949 * 22 7 6 24 24 H 1.09002 * 109.46654 * 59.99451 * 1 2 3 25 25 H 1.08987 * 109.47373 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46814 * 300.00405 * 1 2 3 27 27 H 1.09008 * 109.47083 * 120.00013 * 2 1 3 28 28 H 1.08993 * 109.47327 * 300.00196 * 3 2 1 29 29 H 1.09007 * 109.47332 * 59.99911 * 3 2 1 30 30 H 1.09002 * 109.47664 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46917 * 305.00575 * 4 2 1 32 32 H 1.09004 * 109.47174 * 65.00007 * 4 2 1 33 33 H 1.08000 * 126.19676 * 0.02562 * 6 5 4 34 34 H 1.08003 * 119.81262 * 0.02562 * 9 8 7 35 35 H 1.07998 * 119.81629 * 180.24023 * 10 9 8 36 36 H 1.07999 * 120.00512 * 179.72470 * 11 10 9 37 37 H 0.96999 * 119.99847 * 180.02562 * 16 15 13 38 38 H 1.07994 * 120.18428 * 0.02562 * 21 8 7 39 39 H 1.08004 * 125.94986 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.2150 -1.9655 -1.2872 7 6 5.5346 -1.6345 -1.1844 8 6 6.6819 -2.5757 -1.2365 9 6 6.4554 -3.9445 -1.3993 10 6 7.5191 -4.8283 -1.4538 11 6 8.8124 -4.3694 -1.3377 12 6 9.0581 -2.9940 -1.1678 13 6 10.3844 -2.5180 -1.0486 14 1 10.5796 -1.5847 -0.5414 15 6 11.4438 -3.2560 -1.5879 16 7 11.2085 -4.1776 -2.4862 17 14 13.1941 -2.9257 -1.0251 18 1 13.5112 -3.7906 0.1395 19 1 14.1354 -3.2242 -2.1343 20 1 13.3272 -1.4995 -0.6334 21 6 7.9779 -2.0962 -1.1183 22 6 5.6107 -0.2378 -1.0198 23 7 4.3941 0.2391 -1.0306 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0275 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6768 1.9563 -0.8899 29 1 1.6768 1.9564 0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6053 -1.7198 -1.2951 32 1 1.7517 -0.1583 -2.1370 33 1 3.8155 -2.9598 -1.4217 34 1 5.4447 -4.3148 -1.4874 35 1 7.3338 -5.8843 -1.5838 36 1 9.6378 -5.0648 -1.3766 37 1 11.9428 -4.6895 -2.8598 38 1 8.1559 -1.0390 -0.9878 39 1 6.5169 0.3392 -0.9093 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240882036.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:00 Heat of formation + Delta-G solvation = 65.296850 kcal Electronic energy + Delta-G solvation = -19415.468777 eV Core-core repulsion = 16516.168112 eV Total energy + Delta-G solvation = -2899.300666 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.11477 -39.15155 -37.31434 -35.55824 -33.16586 -32.36175 -31.62576 -29.41089 -27.99288 -27.07673 -26.89140 -23.31596 -23.00943 -21.70816 -21.10526 -20.68858 -19.02734 -17.83337 -17.07245 -16.47540 -16.22053 -15.95560 -15.47145 -15.23305 -14.92080 -14.44079 -14.31763 -13.93063 -13.82352 -13.55125 -13.43617 -13.15807 -12.96516 -12.85558 -12.75715 -12.48137 -12.38378 -12.10174 -11.81933 -11.72988 -11.54242 -11.27748 -11.08677 -10.99440 -10.28009 -10.13397 -9.32078 -8.60007 -8.35868 -6.29380 0.66096 1.06144 1.15486 1.39503 1.52537 1.53708 1.65638 2.19839 2.24802 2.87785 3.52369 3.80259 3.88457 3.96694 4.02549 4.19067 4.40045 4.45496 4.48084 4.61865 4.68775 4.77527 4.80011 4.85902 4.91045 5.02268 5.07003 5.13210 5.17617 5.22602 5.34393 5.39071 5.48436 5.59169 5.72539 5.85684 6.09723 6.15655 6.19400 6.27740 6.47266 6.75964 6.79068 7.01355 7.10805 8.38941 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.039789 B = 0.003505 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.546200 B = 7986.665259 C = 8528.188581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.103 4.103 3 C -0.159 4.159 4 C 0.129 3.871 5 N -0.366 5.366 6 C 0.069 3.931 7 C -0.206 4.206 8 C 0.016 3.984 9 C -0.231 4.231 10 C -0.106 4.106 11 C -0.198 4.198 12 C 0.082 3.918 13 C -0.504 4.504 14 H 0.072 0.928 15 C 0.035 3.965 16 N -0.828 5.828 17 Si 0.980 3.020 18 H -0.263 1.263 19 H -0.268 1.268 20 H -0.260 1.260 21 C -0.234 4.234 22 C 0.043 3.957 23 N -0.307 5.307 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.125 0.875 32 H 0.092 0.908 33 H 0.203 0.797 34 H 0.123 0.877 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.286 0.714 38 H 0.094 0.906 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.328 4.088 2.540 17.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 C -0.216 4.216 4 C 0.009 3.991 5 N -0.147 5.147 6 C -0.078 4.078 7 C -0.217 4.217 8 C 0.014 3.986 9 C -0.250 4.250 10 C -0.125 4.125 11 C -0.217 4.217 12 C 0.080 3.920 13 C -0.534 4.534 14 H 0.090 0.910 15 C -0.179 4.179 16 N -0.455 5.455 17 Si 0.801 3.199 18 H -0.187 1.187 19 H -0.193 1.193 20 H -0.183 1.183 21 C -0.254 4.254 22 C -0.142 4.142 23 N -0.129 5.129 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.143 0.857 32 H 0.110 0.890 33 H 0.220 0.780 34 H 0.141 0.859 35 H 0.131 0.869 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -18.129 5.010 2.440 18.966 hybrid contribution 1.799 -0.638 0.013 1.909 sum -16.330 4.371 2.452 17.082 Atomic orbital electron populations 1.21745 0.91904 1.03053 1.02915 1.21351 0.97566 0.96669 0.96615 1.22054 1.02798 0.95425 1.01331 1.22245 0.72291 1.04467 1.00090 1.48767 1.07295 1.03628 1.55057 1.22862 0.91015 0.93305 1.00588 1.19179 0.92989 0.93421 1.16094 1.17947 0.90650 0.92252 0.97725 1.20680 0.97931 0.92093 1.14303 1.20901 0.92923 0.98694 0.99946 1.21310 0.95825 0.95674 1.08915 1.17870 0.93310 0.92105 0.88758 1.19798 0.91938 1.07507 1.34186 0.90971 1.26713 1.05544 0.93321 0.92297 1.69895 1.36005 1.19372 1.20206 0.85236 0.75896 0.79858 0.78881 1.18726 1.19268 1.18347 1.21091 0.92275 0.97606 1.14384 1.24110 0.96197 0.94168 0.99764 1.77004 0.99019 1.11796 1.25037 0.91525 0.91074 0.91841 0.92088 0.92677 0.92772 0.91813 0.85707 0.89023 0.77987 0.85918 0.86946 0.88370 0.90313 0.88807 0.80187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.19 71.98 0.66 -0.81 16 2 C -0.10 -1.71 3.12 -10.80 -0.03 -1.74 16 3 C -0.16 -3.20 8.91 71.98 0.64 -2.56 16 4 C 0.13 2.19 5.95 86.38 0.51 2.71 16 5 N -0.37 -9.78 3.67 -347.23 -1.27 -11.05 16 6 C 0.07 2.02 10.83 83.81 0.91 2.92 16 7 C -0.21 -7.70 6.04 -20.33 -0.12 -7.83 16 8 C 0.02 0.70 5.87 -20.08 -0.12 0.58 16 9 C -0.23 -9.86 9.57 22.66 0.22 -9.64 16 10 C -0.11 -4.97 10.01 22.19 0.22 -4.74 16 11 C -0.20 -10.70 8.69 22.76 0.20 -10.50 16 12 C 0.08 4.57 5.57 -21.32 -0.12 4.45 16 13 C -0.50 -28.26 9.05 23.46 0.21 -28.05 16 14 H 0.07 3.92 7.91 -2.91 -0.02 3.90 16 15 C 0.04 1.85 5.14 85.25 0.44 2.28 16 16 N -0.83 -44.70 10.96 21.82 0.24 -44.46 16 17 Si 0.98 39.52 29.60 68.60 2.03 41.55 16 18 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 19 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 20 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 21 C -0.23 -11.92 9.32 22.94 0.21 -11.70 16 22 C 0.04 1.54 11.41 85.50 0.98 2.51 16 23 N -0.31 -9.95 9.59 -56.46 -0.54 -10.49 16 24 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.06 1.68 5.36 -2.39 -0.01 1.67 16 31 H 0.12 1.35 8.07 -2.39 -0.02 1.33 16 32 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.20 4.41 7.27 -2.91 -0.02 4.39 16 34 H 0.12 4.22 6.99 -2.91 -0.02 4.20 16 35 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 36 H 0.10 5.56 6.15 -2.91 -0.02 5.54 16 37 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 38 H 0.09 4.58 7.03 -2.91 -0.02 4.56 16 39 H 0.18 6.20 7.34 -2.91 -0.02 6.18 16 Total: -1.00 -65.61 323.27 6.30 -59.32 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 1.04 Total: 27.25 kcal Atomic # 6 Polarization: -66.92 SS G_CDS: 4.81 Total: -62.11 kcal Atomic # 7 Polarization: -64.42 SS G_CDS: -1.58 Total: -66.00 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -65.61 6.30 -59.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240882036.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.613 kcal (2) G-P(sol) polarization free energy of solvation -65.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds