Wall clock time and date at job start Mon Mar 30 2020 00:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38933 * 119.23206 * 2 1 4 4 C 1.36852 * 119.84818 * 180.02562 * 3 2 1 5 5 C 1.41140 * 118.40458 * 359.97438 * 4 3 2 6 6 C 1.40769 * 120.72684 * 179.97438 * 5 4 3 7 7 H 1.08001 * 119.99949 * 207.30179 * 6 5 4 8 8 C 1.40097 * 119.99796 * 27.30933 * 6 5 4 9 9 N 1.30762 * 120.00164 * 13.51174 * 8 6 5 10 10 Si 1.86801 * 119.99985 * 193.50888 * 8 6 5 11 11 H 1.48506 * 109.46983 * 90.00119 * 10 8 6 12 12 H 1.48498 * 109.47309 * 209.99782 * 10 8 6 13 13 H 1.48498 * 109.47346 * 330.00258 * 10 8 6 14 14 C 1.42073 * 118.54370 * 0.02562 * 5 4 3 15 15 C 1.47076 * 120.01793 * 179.97438 * 14 5 4 16 16 C 1.32473 * 118.54107 * 63.21441 * 15 14 5 17 17 C 1.51632 * 120.20593 * 179.18549 * 16 15 14 18 18 H 1.09001 * 112.92382 * 157.99082 * 17 16 15 19 19 C 1.55144 * 105.89866 * 282.22926 * 17 16 15 20 20 C 1.54346 * 104.36265 * 83.24325 * 19 17 16 21 21 C 1.54363 * 104.93822 * 4.19122 * 20 19 17 22 22 H 1.09003 * 111.81508 * 142.79306 * 21 20 19 23 23 C 1.50260 * 118.54439 * 243.23520 * 15 14 5 24 24 N 1.48738 * 104.86453 * 22.14582 * 21 20 19 25 25 N 1.31659 * 119.22901 * 180.25036 * 2 1 3 26 26 H 1.09001 * 109.46843 * 89.99956 * 1 2 3 27 27 H 1.08999 * 109.47589 * 210.00291 * 1 2 3 28 28 H 1.09001 * 109.47237 * 330.00316 * 1 2 3 29 29 H 1.08006 * 120.08108 * 0.02562 * 3 2 1 30 30 H 1.07997 * 120.79507 * 180.02562 * 4 3 2 31 31 H 0.97003 * 120.00170 * 179.97438 * 9 8 6 32 32 H 1.07995 * 119.89776 * 359.20982 * 16 15 14 33 33 H 1.09002 * 110.47654 * 202.00032 * 19 17 16 34 34 H 1.09001 * 110.47714 * 324.48718 * 19 17 16 35 35 H 1.08997 * 110.31358 * 123.06844 * 20 19 17 36 36 H 1.09000 * 110.31679 * 245.26612 * 20 19 17 37 37 H 1.08997 * 109.23312 * 306.66502 * 23 15 14 38 38 H 1.09002 * 109.22858 * 66.08066 * 23 15 14 39 39 H 1.00897 * 110.99762 * 200.26174 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2124 0.0000 4 6 3.5539 1.2271 -0.0005 5 6 4.2386 -0.0071 -0.0005 6 6 5.6457 -0.0490 -0.0016 7 1 6.1604 -0.8960 -0.4306 8 6 6.3784 1.0080 0.5540 9 7 5.7785 1.8975 1.3016 10 14 8.2123 1.1466 0.2271 11 1 8.4372 1.9609 -0.9943 12 1 8.8738 1.7990 1.3855 13 1 8.7839 -0.2097 0.0299 14 6 3.4766 -1.2062 -0.0005 15 6 4.1568 -2.5102 -0.0011 16 6 4.9149 -2.8291 1.0375 17 6 5.6187 -4.1713 1.0847 18 1 6.4794 -4.1761 1.7534 19 6 4.5338 -5.2063 1.4832 20 6 3.8271 -5.5509 0.1549 21 6 4.6154 -4.7814 -0.9264 22 1 4.7012 -5.3544 -1.8498 23 6 3.9614 -3.4214 -1.1797 24 7 5.9509 -4.5328 -0.3207 25 7 2.1499 -1.1489 -0.0050 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.6343 2.1412 0.0004 30 1 4.0968 2.1607 -0.0001 31 1 6.2858 2.6291 1.6866 32 1 5.0317 -2.1311 1.8532 33 1 4.9948 -6.0961 1.9119 34 1 3.8278 -4.7666 2.1878 35 1 3.8750 -6.6237 -0.0319 36 1 2.7902 -5.2160 0.1800 37 1 2.8943 -3.5626 -1.3514 38 1 4.4101 -2.9670 -2.0631 39 1 6.4237 -3.7733 -0.7872 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242021873.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:01 Heat of formation + Delta-G solvation = 33.171533 kcal Electronic energy + Delta-G solvation = -20865.631819 eV Core-core repulsion = 17964.938095 eV Total energy + Delta-G solvation = -2900.693724 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.94067 -38.33826 -34.34636 -33.09654 -30.98156 -30.69077 -30.17959 -29.45467 -27.76523 -24.56153 -23.91342 -22.58269 -20.81195 -20.40133 -19.85260 -17.63165 -17.37931 -16.21621 -15.59871 -14.53568 -14.42963 -14.25936 -13.96728 -13.80571 -13.12661 -12.98837 -12.52926 -12.36872 -12.14375 -11.84887 -11.73048 -11.69066 -11.51327 -11.36366 -11.20186 -10.98917 -10.89350 -10.81636 -10.57127 -10.32739 -10.14573 -9.85133 -9.43669 -8.49050 -8.25199 -8.06422 -7.81209 -7.37012 -6.88425 -4.50875 2.42376 2.75802 2.98413 3.01908 3.10530 3.19433 3.80207 4.50910 4.62972 4.98499 5.10905 5.32331 5.38331 5.48494 5.59008 5.77145 5.80883 5.90878 6.04987 6.09516 6.14038 6.18668 6.27620 6.34096 6.35004 6.37849 6.40288 6.48728 6.52610 6.61126 6.82035 6.97006 7.03733 7.07898 7.18868 7.35725 7.63778 7.67081 7.74457 7.90056 7.92684 8.38162 8.60881 8.68530 9.58928 9.99965 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.012904 B = 0.009205 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.390057 B = 3041.172497 C = 4789.366657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.014 4.014 3 C -0.145 4.145 4 C -0.131 4.131 5 C 0.081 3.919 6 C -0.436 4.436 7 H 0.083 0.917 8 C 0.074 3.926 9 N -0.791 5.791 10 Si 0.910 3.090 11 H -0.267 1.267 12 H -0.277 1.277 13 H -0.258 1.258 14 C 0.017 3.983 15 C -0.011 4.011 16 C -0.191 4.191 17 C 0.099 3.901 18 H 0.100 0.900 19 C -0.112 4.112 20 C -0.115 4.115 21 C 0.065 3.935 22 H 0.089 0.911 23 C -0.105 4.105 24 N -0.659 5.659 25 N -0.452 5.452 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.126 0.874 31 H 0.283 0.717 32 H 0.112 0.888 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.401 -6.537 -1.349 6.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.155 4.155 3 C -0.166 4.166 4 C -0.157 4.157 5 C 0.077 3.923 6 C -0.465 4.465 7 H 0.101 0.899 8 C -0.145 4.145 9 N -0.415 5.415 10 Si 0.734 3.266 11 H -0.192 1.192 12 H -0.202 1.202 13 H -0.182 1.182 14 C -0.122 4.122 15 C -0.013 4.013 16 C -0.212 4.212 17 C -0.010 4.010 18 H 0.118 0.882 19 C -0.150 4.150 20 C -0.153 4.153 21 C -0.045 4.045 22 H 0.107 0.893 23 C -0.143 4.143 24 N -0.287 5.287 25 N -0.160 5.160 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.114 0.886 30 H 0.144 0.856 31 H 0.094 0.906 32 H 0.130 0.870 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.603 -7.800 -1.111 7.902 hybrid contribution 0.861 2.317 -0.104 2.474 sum 0.257 -5.482 -1.215 5.621 Atomic orbital electron populations 1.20269 0.91695 1.00792 1.00281 1.20237 0.94769 0.88675 1.11786 1.21236 0.95474 0.97041 1.02827 1.21400 0.92566 0.98906 1.02801 1.18385 0.94087 0.90767 0.89065 1.19449 0.90927 1.03739 1.32396 0.89899 1.25998 1.01498 0.94316 0.92708 1.69751 1.38807 1.11032 1.21936 0.86251 0.81453 0.79934 0.78920 1.19213 1.20162 1.18174 1.19705 0.88308 0.91894 1.12326 1.19131 0.95772 0.92146 0.94213 1.23551 1.00757 0.97378 0.99502 1.22004 0.96323 0.91591 0.91126 0.88169 1.22440 0.97235 0.97979 0.97311 1.22274 0.99178 0.99376 0.94459 1.22614 0.89221 0.95065 0.97601 0.89343 1.21064 1.01866 0.94325 0.97092 1.64118 1.17506 1.44196 1.02831 1.66940 1.09694 1.29101 1.10255 0.93315 0.92716 0.93012 0.88564 0.85650 0.90552 0.87005 0.91887 0.91276 0.91812 0.91220 0.90478 0.91486 0.84420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.33 10.15 36.01 0.37 -0.97 16 2 C -0.01 -0.32 6.79 -82.41 -0.56 -0.88 16 3 C -0.15 -3.40 9.64 -39.83 -0.38 -3.78 16 4 C -0.13 -3.33 8.72 -38.98 -0.34 -3.67 16 5 C 0.08 2.10 5.56 -106.37 -0.59 1.51 16 6 C -0.44 -10.84 7.80 -37.93 -0.30 -11.14 16 7 H 0.08 2.01 7.11 -52.49 -0.37 1.64 16 8 C 0.07 1.75 5.23 -17.31 -0.09 1.66 16 9 N -0.79 -19.49 10.93 55.56 0.61 -18.88 16 10 Si 0.91 17.93 29.58 -169.99 -5.03 12.90 16 11 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 12 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 13 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 14 C 0.02 0.42 6.11 -82.40 -0.50 -0.09 16 15 C -0.01 -0.23 4.44 -103.17 -0.46 -0.69 16 16 C -0.19 -3.79 7.38 -35.77 -0.26 -4.05 16 17 C 0.10 1.62 4.78 -66.18 -0.32 1.30 16 18 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 19 C -0.11 -1.64 6.39 -24.89 -0.16 -1.79 16 20 C -0.11 -1.64 6.39 -25.31 -0.16 -1.80 16 21 C 0.07 0.99 4.32 -65.97 -0.29 0.70 16 22 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 23 C -0.10 -1.88 5.12 -28.09 -0.14 -2.02 16 24 N -0.66 -10.42 7.44 -95.85 -0.71 -11.14 16 25 N -0.45 -11.04 10.20 -5.56 -0.06 -11.09 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 29 H 0.10 1.98 8.06 -52.48 -0.42 1.56 16 30 H 0.13 3.23 6.31 -52.49 -0.33 2.90 16 31 H 0.28 6.37 8.29 -40.82 -0.34 6.04 16 32 H 0.11 2.48 7.98 -52.49 -0.42 2.06 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.05 7.86 -51.93 -0.41 0.65 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.04 7.73 -51.93 -0.40 0.64 16 37 H 0.08 1.42 7.94 -51.93 -0.41 1.00 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.34 5.57 8.30 -39.29 -0.33 5.24 16 LS Contribution 312.95 15.07 4.72 4.72 Total: -1.00 -26.84 312.95 -10.27 -37.11 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -5.61 Total: 12.10 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: -4.19 Total: -25.72 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: -0.16 Total: -41.11 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -26.84 -10.27 -37.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242021873.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.280 kcal (2) G-P(sol) polarization free energy of solvation -26.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds