Wall clock time and date at job start Mon Mar 30 2020 00:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38933 * 119.23206 * 2 1 4 4 C 1.36852 * 119.84818 * 180.02562 * 3 2 1 5 5 C 1.41140 * 118.40458 * 359.97438 * 4 3 2 6 6 C 1.40769 * 120.72684 * 179.97438 * 5 4 3 7 7 H 1.08001 * 119.99949 * 207.30179 * 6 5 4 8 8 C 1.40097 * 119.99796 * 27.30933 * 6 5 4 9 9 N 1.30762 * 120.00164 * 13.51174 * 8 6 5 10 10 Si 1.86801 * 119.99985 * 193.50888 * 8 6 5 11 11 H 1.48506 * 109.46983 * 90.00119 * 10 8 6 12 12 H 1.48498 * 109.47309 * 209.99782 * 10 8 6 13 13 H 1.48498 * 109.47346 * 330.00258 * 10 8 6 14 14 C 1.42073 * 118.54370 * 0.02562 * 5 4 3 15 15 C 1.47076 * 120.01793 * 179.97438 * 14 5 4 16 16 C 1.32473 * 118.54107 * 63.21441 * 15 14 5 17 17 C 1.51632 * 120.20593 * 179.18549 * 16 15 14 18 18 H 1.09001 * 112.92382 * 157.99082 * 17 16 15 19 19 C 1.55144 * 105.89866 * 282.22926 * 17 16 15 20 20 C 1.54346 * 104.36265 * 83.24325 * 19 17 16 21 21 C 1.54363 * 104.93822 * 4.19122 * 20 19 17 22 22 H 1.09003 * 111.81508 * 142.79306 * 21 20 19 23 23 C 1.50260 * 118.54439 * 243.23520 * 15 14 5 24 24 N 1.48738 * 104.86453 * 22.14582 * 21 20 19 25 25 N 1.31659 * 119.22901 * 180.25036 * 2 1 3 26 26 H 1.09001 * 109.46843 * 89.99956 * 1 2 3 27 27 H 1.08999 * 109.47589 * 210.00291 * 1 2 3 28 28 H 1.09001 * 109.47237 * 330.00316 * 1 2 3 29 29 H 1.08006 * 120.08108 * 0.02562 * 3 2 1 30 30 H 1.07997 * 120.79507 * 180.02562 * 4 3 2 31 31 H 0.97003 * 120.00170 * 179.97438 * 9 8 6 32 32 H 1.07995 * 119.89776 * 359.20982 * 16 15 14 33 33 H 1.09002 * 110.47654 * 202.00032 * 19 17 16 34 34 H 1.09001 * 110.47714 * 324.48718 * 19 17 16 35 35 H 1.08997 * 110.31358 * 123.06844 * 20 19 17 36 36 H 1.09000 * 110.31679 * 245.26612 * 20 19 17 37 37 H 1.08997 * 109.23312 * 306.66502 * 23 15 14 38 38 H 1.09002 * 109.22858 * 66.08066 * 23 15 14 39 39 H 1.00897 * 110.99762 * 200.26174 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2124 0.0000 4 6 3.5539 1.2271 -0.0005 5 6 4.2386 -0.0071 -0.0005 6 6 5.6457 -0.0490 -0.0016 7 1 6.1604 -0.8960 -0.4306 8 6 6.3784 1.0080 0.5540 9 7 5.7785 1.8975 1.3016 10 14 8.2123 1.1466 0.2271 11 1 8.4372 1.9609 -0.9943 12 1 8.8738 1.7990 1.3855 13 1 8.7839 -0.2097 0.0299 14 6 3.4766 -1.2062 -0.0005 15 6 4.1568 -2.5102 -0.0011 16 6 4.9149 -2.8291 1.0375 17 6 5.6187 -4.1713 1.0847 18 1 6.4794 -4.1761 1.7534 19 6 4.5338 -5.2063 1.4832 20 6 3.8271 -5.5509 0.1549 21 6 4.6154 -4.7814 -0.9264 22 1 4.7012 -5.3544 -1.8498 23 6 3.9614 -3.4214 -1.1797 24 7 5.9509 -4.5328 -0.3207 25 7 2.1499 -1.1489 -0.0050 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.6343 2.1412 0.0004 30 1 4.0968 2.1607 -0.0001 31 1 6.2858 2.6291 1.6866 32 1 5.0317 -2.1311 1.8532 33 1 4.9948 -6.0961 1.9119 34 1 3.8278 -4.7666 2.1878 35 1 3.8750 -6.6237 -0.0319 36 1 2.7902 -5.2160 0.1800 37 1 2.8943 -3.5626 -1.3514 38 1 4.4101 -2.9670 -2.0631 39 1 6.4237 -3.7733 -0.7872 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242021873.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:01 Heat of formation + Delta-G solvation = 17.813211 kcal Electronic energy + Delta-G solvation = -20866.297806 eV Core-core repulsion = 17964.938095 eV Total energy + Delta-G solvation = -2901.359711 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.35344 -40.08431 -36.16273 -34.71312 -32.74677 -32.10922 -31.63406 -30.86245 -29.51881 -26.25410 -25.33859 -24.22652 -22.61278 -21.96356 -21.07879 -19.26567 -19.03620 -17.67337 -17.39654 -16.29614 -15.86181 -15.77930 -15.50544 -15.33885 -14.73857 -14.54793 -14.20564 -13.70243 -13.58472 -13.48480 -13.33626 -13.14027 -13.02584 -12.87030 -12.77274 -12.65613 -12.38044 -12.16465 -12.04616 -11.64459 -11.54768 -11.48126 -11.21950 -10.30193 -9.96666 -9.67214 -9.47922 -9.11859 -8.68378 -6.40252 0.61917 0.96926 1.35221 1.47038 1.47923 1.48930 2.14429 2.68644 3.33055 3.57364 3.73342 3.88498 3.90615 4.12750 4.22770 4.29470 4.36323 4.49492 4.57419 4.59645 4.74700 4.80192 4.85639 4.90849 4.92119 4.96364 5.04956 5.08951 5.12206 5.18506 5.20191 5.29248 5.35381 5.38880 5.66064 5.80745 5.82198 5.93618 6.05800 6.21848 6.36102 6.51267 6.73997 6.81071 7.71938 8.22228 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.012904 B = 0.009205 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.390057 B = 3041.172497 C = 4789.366657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.025 4.025 3 C -0.153 4.153 4 C -0.156 4.156 5 C 0.050 3.950 6 C -0.455 4.455 7 H 0.081 0.919 8 C 0.035 3.965 9 N -0.822 5.822 10 Si 0.980 3.020 11 H -0.262 1.262 12 H -0.269 1.269 13 H -0.253 1.253 14 C 0.004 3.996 15 C -0.031 4.031 16 C -0.182 4.182 17 C 0.101 3.899 18 H 0.113 0.887 19 C -0.108 4.108 20 C -0.113 4.113 21 C 0.070 3.930 22 H 0.114 0.886 23 C -0.096 4.096 24 N -0.650 5.650 25 N -0.468 5.468 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.123 0.877 30 H 0.113 0.887 31 H 0.290 0.710 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.018 -8.136 -1.702 8.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.165 4.165 3 C -0.173 4.173 4 C -0.181 4.181 5 C 0.046 3.954 6 C -0.484 4.484 7 H 0.099 0.901 8 C -0.181 4.181 9 N -0.448 5.448 10 Si 0.800 3.200 11 H -0.187 1.187 12 H -0.194 1.194 13 H -0.176 1.176 14 C -0.135 4.135 15 C -0.032 4.032 16 C -0.203 4.203 17 C -0.009 4.009 18 H 0.131 0.869 19 C -0.146 4.146 20 C -0.151 4.151 21 C -0.040 4.040 22 H 0.131 0.869 23 C -0.135 4.135 24 N -0.277 5.277 25 N -0.177 5.177 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.141 0.859 30 H 0.131 0.869 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.241 -9.405 -1.465 9.521 hybrid contribution 0.630 2.864 0.049 2.933 sum 0.389 -6.541 -1.416 6.703 Atomic orbital electron populations 1.20322 0.88172 1.02126 1.01855 1.21069 0.97246 0.88217 1.09992 1.21544 0.94963 0.98543 1.02214 1.21455 0.93693 0.98522 1.04479 1.18759 0.95046 0.91517 0.90122 1.19552 0.90940 1.04549 1.33406 0.90135 1.26810 1.05851 0.93513 0.91889 1.69803 1.40688 1.11672 1.22594 0.85215 0.75797 0.80059 0.78923 1.18718 1.19360 1.17628 1.20297 0.88692 0.93254 1.11291 1.19290 0.96384 0.91650 0.95888 1.23628 1.00269 0.98492 0.97889 1.22127 0.96989 0.89728 0.92007 0.86911 1.22436 0.96493 0.98176 0.97529 1.22298 0.98313 1.00828 0.93623 1.22712 0.88609 0.93583 0.99052 0.86854 1.21021 1.01679 0.95419 0.95372 1.64180 1.17593 1.43554 1.02375 1.67085 1.09767 1.29805 1.11058 0.91496 0.92325 0.90732 0.85946 0.86895 0.89879 0.90407 0.89324 0.92426 0.89057 0.92183 0.91203 0.92130 0.84845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.35 10.15 71.24 0.72 -1.63 16 2 C -0.02 -1.14 6.79 42.75 0.29 -0.85 16 3 C -0.15 -7.22 9.64 22.11 0.21 -7.01 16 4 C -0.16 -8.22 8.72 22.66 0.20 -8.02 16 5 C 0.05 2.68 5.56 -21.00 -0.12 2.56 16 6 C -0.46 -23.49 7.80 23.34 0.18 -23.30 16 7 H 0.08 4.04 7.11 -2.91 -0.02 4.02 16 8 C 0.04 1.70 5.23 85.30 0.45 2.15 16 9 N -0.82 -41.77 10.93 21.85 0.24 -41.53 16 10 Si 0.98 37.00 29.58 68.60 2.03 39.03 16 11 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 12 H -0.27 -9.75 7.11 99.48 0.71 -9.05 16 13 H -0.25 -9.25 7.11 99.48 0.71 -8.54 16 14 C 0.00 0.19 6.11 42.27 0.26 0.45 16 15 C -0.03 -1.31 4.44 -18.81 -0.08 -1.39 16 16 C -0.18 -7.33 7.38 24.85 0.18 -7.15 16 17 C 0.10 3.16 4.78 44.82 0.21 3.38 16 18 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 19 C -0.11 -2.93 6.39 31.79 0.20 -2.73 16 20 C -0.11 -2.91 6.39 31.51 0.20 -2.71 16 21 C 0.07 1.98 4.32 45.03 0.19 2.17 16 22 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 23 C -0.10 -3.42 5.12 29.72 0.15 -3.27 16 24 N -0.65 -19.22 7.44 -457.15 -3.40 -22.62 16 25 N -0.47 -23.27 10.20 -171.52 -1.75 -25.02 16 26 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 29 H 0.12 4.97 8.06 -2.91 -0.02 4.95 16 30 H 0.11 6.12 6.31 -2.91 -0.02 6.10 16 31 H 0.29 13.36 8.29 -92.71 -0.77 12.59 16 32 H 0.08 3.64 7.98 -2.91 -0.02 3.61 16 33 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.06 1.69 7.86 -2.39 -0.02 1.67 16 35 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.06 1.68 7.73 -2.39 -0.02 1.66 16 37 H 0.07 2.56 7.94 -2.39 -0.02 2.54 16 38 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.34 10.56 8.30 -89.70 -0.74 9.82 16 Total: -1.00 -59.59 312.95 0.69 -58.90 By element: Atomic # 1 Polarization: 38.28 SS G_CDS: 0.31 Total: 38.59 kcal Atomic # 6 Polarization: -50.60 SS G_CDS: 3.26 Total: -47.34 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -4.91 Total: -89.17 kcal Atomic # 14 Polarization: 37.00 SS G_CDS: 2.03 Total: 39.03 kcal Total: -59.59 0.69 -58.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242021873.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.713 kcal (2) G-P(sol) polarization free energy of solvation -59.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds