Wall clock time and date at job start Mon Mar 30 2020 00:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36257 * 119.94054 * 2 1 4 4 C 1.40918 * 119.87785 * 180.02562 * 3 2 1 5 5 C 1.41015 * 120.11823 * 179.97438 * 4 3 2 6 6 H 1.08001 * 120.00618 * 204.96632 * 5 4 3 7 7 C 1.39991 * 119.99715 * 24.96124 * 5 4 3 8 8 N 1.30814 * 120.00165 * 16.48017 * 7 5 4 9 9 Si 1.86800 * 119.99759 * 196.47004 * 7 5 4 10 10 H 1.48498 * 109.47141 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46810 * 120.00435 * 9 7 5 12 12 H 1.48498 * 109.47412 * 240.00083 * 9 7 5 13 13 C 1.40949 * 119.76376 * 0.02562 * 4 3 2 14 14 C 1.36226 * 119.88115 * 359.72235 * 13 4 3 15 15 C 1.39923 * 119.93677 * 180.02562 * 2 1 3 16 16 C 1.47991 * 119.88397 * 359.97157 * 15 2 1 17 17 C 1.41046 * 126.06470 * 138.05546 * 16 15 2 18 18 C 1.34987 * 107.85082 * 180.16688 * 17 16 15 19 19 N 1.35139 * 108.04219 * 359.58834 * 18 17 16 20 20 C 1.46503 * 125.91192 * 180.28075 * 19 18 17 21 21 C 1.53001 * 109.47369 * 275.00113 * 20 19 18 22 22 C 1.53001 * 109.47095 * 35.00481 * 20 19 18 23 23 N 1.31878 * 126.06740 * 317.76568 * 16 15 2 24 24 H 1.09004 * 109.47170 * 264.41552 * 1 2 3 25 25 H 1.09000 * 109.47106 * 24.41346 * 1 2 3 26 26 H 1.09000 * 109.47273 * 144.41043 * 1 2 3 27 27 H 1.08004 * 120.06025 * 0.02562 * 3 2 1 28 28 H 0.96991 * 120.00329 * 179.97438 * 8 7 5 29 29 H 1.08005 * 120.06156 * 179.97438 * 13 4 3 30 30 H 1.07995 * 119.94577 * 180.27501 * 14 13 4 31 31 H 1.07999 * 126.07342 * 0.05816 * 17 16 15 32 32 H 1.07998 * 125.97535 * 179.85559 * 18 17 16 33 33 H 1.08997 * 109.46692 * 155.00228 * 20 19 18 34 34 H 1.09000 * 109.46753 * 60.00016 * 21 20 19 35 35 H 1.08997 * 109.47510 * 180.02562 * 21 20 19 36 36 H 1.09006 * 109.47141 * 300.00594 * 21 20 19 37 37 H 1.08997 * 109.47144 * 299.99470 * 22 20 19 38 38 H 1.08997 * 109.47351 * 59.99712 * 22 20 19 39 39 H 1.08997 * 109.46763 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1807 0.0000 4 6 3.5963 1.1792 -0.0005 5 6 4.3052 2.3982 -0.0011 6 1 5.3095 2.4387 -0.3963 7 6 3.7071 3.5559 0.5105 8 7 2.6465 3.4630 1.2706 9 14 4.4238 5.2333 0.1081 10 1 5.6142 5.0667 -0.7640 11 1 3.4043 6.0508 -0.5974 12 1 4.8223 5.9160 1.3652 13 6 4.2947 -0.0451 -0.0016 14 6 3.6050 -1.2199 0.0036 15 6 2.2053 -1.2125 -0.0005 16 6 1.4614 -2.4919 -0.0005 17 6 1.7767 -3.6358 -0.7629 18 6 0.8588 -4.5853 -0.4835 19 7 -0.0037 -4.0790 0.4254 20 6 -1.1507 -4.7816 1.0060 21 6 -2.3579 -4.6427 0.0764 22 6 -0.8075 -6.2627 1.1785 23 7 0.3891 -2.7664 0.7165 24 1 -0.3634 -0.1000 1.0228 25 1 -0.3633 0.9358 -0.4248 26 1 -0.3634 -0.8357 -0.5981 27 1 1.6471 2.1161 0.0004 28 1 2.2323 4.2651 1.6253 29 1 5.3747 -0.0519 -0.0025 30 1 4.1390 -2.1585 0.0072 31 1 2.6044 -3.7340 -1.4497 32 1 0.8228 -5.5775 -0.9084 33 1 -1.3884 -4.3483 1.9775 34 1 -2.1201 -5.0760 -0.8951 35 1 -3.2114 -5.1650 0.5086 36 1 -2.6023 -3.5875 -0.0465 37 1 -0.5698 -6.6961 0.2070 38 1 0.0525 -6.3617 1.8407 39 1 -1.6607 -6.7853 1.6109 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242455290.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:04 Heat of formation + Delta-G solvation = 78.966841 kcal Electronic energy + Delta-G solvation = -19847.200847 eV Core-core repulsion = 16948.492957 eV Total energy + Delta-G solvation = -2898.707890 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.59713 -37.69329 -35.58492 -33.83164 -31.62823 -30.47868 -29.42606 -28.56505 -27.45669 -25.73516 -25.34008 -22.49955 -21.51677 -20.00039 -19.40903 -18.82905 -17.06368 -16.84135 -15.26452 -15.13162 -14.64902 -14.26763 -13.83889 -13.56769 -13.15961 -12.98323 -12.91230 -12.54482 -12.41456 -12.37543 -12.13552 -11.73318 -11.54255 -11.46178 -11.23571 -11.18291 -11.06739 -10.89349 -10.62199 -10.42555 -9.93487 -9.56026 -9.43339 -9.26343 -8.64404 -8.10231 -7.30241 -7.11067 -6.76330 -4.34517 2.28691 2.67317 2.90406 3.06041 3.07776 3.12758 3.17004 3.74531 3.91604 4.48809 4.64964 4.78369 4.94976 5.07921 5.27433 5.41974 5.44932 5.48618 5.67146 5.71645 5.88656 5.99630 6.15133 6.19515 6.28302 6.36714 6.47406 6.53783 6.67902 6.86208 6.96076 7.05436 7.25870 7.34329 7.39782 7.53359 7.67431 7.97093 8.05648 8.16047 8.30025 8.47742 8.63879 8.87399 8.99194 10.14697 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.040657 B = 0.003978 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.519611 B = 7037.328373 C = 7497.761777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.038 4.038 3 C -0.170 4.170 4 C 0.120 3.880 5 C -0.453 4.453 6 H 0.080 0.920 7 C 0.074 3.926 8 N -0.784 5.784 9 Si 0.909 3.091 10 H -0.259 1.259 11 H -0.271 1.271 12 H -0.274 1.274 13 C -0.232 4.232 14 C -0.056 4.056 15 C -0.166 4.166 16 C 0.164 3.836 17 C -0.268 4.268 18 C 0.040 3.960 19 N -0.384 5.384 20 C 0.158 3.842 21 C -0.163 4.163 22 C -0.162 4.162 23 N -0.303 5.303 24 H 0.058 0.942 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.121 0.879 28 H 0.281 0.719 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.139 0.861 32 H 0.160 0.840 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.736 -12.523 -1.808 14.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.039 4.039 3 C -0.190 4.190 4 C 0.117 3.883 5 C -0.482 4.482 6 H 0.098 0.902 7 C -0.145 4.145 8 N -0.408 5.408 9 Si 0.733 3.267 10 H -0.183 1.183 11 H -0.197 1.197 12 H -0.199 1.199 13 C -0.252 4.252 14 C -0.076 4.076 15 C -0.170 4.170 16 C 0.000 4.000 17 C -0.298 4.298 18 C -0.105 4.105 19 N -0.167 5.167 20 C 0.056 3.944 21 C -0.222 4.222 22 C -0.220 4.220 23 N -0.124 5.124 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.138 0.862 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.157 0.843 32 H 0.177 0.823 33 H 0.115 0.885 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.897 -12.066 -0.738 14.439 hybrid contribution 0.864 0.324 -0.670 1.140 sum -7.034 -11.742 -1.408 13.760 Atomic orbital electron populations 1.20597 0.93556 0.99926 1.00991 1.19248 0.94003 0.92642 0.98008 1.20880 0.94263 0.96079 1.07733 1.17688 0.92053 0.92099 0.86431 1.19655 1.01345 0.92510 1.34713 0.90188 1.25982 0.94267 1.01563 0.92657 1.69839 1.17635 1.31444 1.21916 0.86250 0.80121 0.81062 0.79255 1.18307 1.19650 1.19945 1.20622 0.97727 0.92434 1.14432 1.20188 0.92278 0.96606 0.98499 1.17085 0.91532 0.87582 1.20812 1.20982 0.92056 0.94203 0.92719 1.21562 1.04706 0.94408 1.09093 1.22144 0.93139 0.99631 0.95553 1.48767 1.23020 1.11015 1.33934 1.21051 0.83770 0.91769 0.97822 1.22231 0.96951 1.03253 0.99715 1.22166 1.02902 0.94059 1.02881 1.77854 1.17377 0.93037 1.24128 0.92368 0.93511 0.93314 0.86167 0.90772 0.88770 0.89133 0.84279 0.82303 0.88486 0.92178 0.91050 0.91600 0.91763 0.91620 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.04 8.85 36.01 0.32 -1.72 16 2 C -0.04 -0.93 5.87 -104.70 -0.61 -1.55 16 3 C -0.17 -4.52 8.24 -39.28 -0.32 -4.84 16 4 C 0.12 3.23 5.58 -106.80 -0.60 2.64 16 5 C -0.45 -11.96 9.04 -37.87 -0.34 -12.31 16 6 H 0.08 2.02 7.90 -52.49 -0.41 1.60 16 7 C 0.07 1.85 5.16 -17.33 -0.09 1.76 16 8 N -0.78 -20.26 10.89 55.55 0.60 -19.65 16 9 Si 0.91 18.48 29.59 -169.99 -5.03 13.45 16 10 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 11 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 12 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 13 C -0.23 -5.78 9.73 -39.28 -0.38 -6.16 16 14 C -0.06 -1.31 9.56 -39.66 -0.38 -1.69 16 15 C -0.17 -3.97 5.86 -104.62 -0.61 -4.59 16 16 C 0.16 3.51 5.82 -82.79 -0.48 3.03 16 17 C -0.27 -4.81 10.59 -39.67 -0.42 -5.23 16 18 C 0.04 0.60 10.56 -17.25 -0.18 0.41 16 19 N -0.38 -6.13 3.53 -54.90 -0.19 -6.33 16 20 C 0.16 1.82 3.93 -67.93 -0.27 1.56 16 21 C -0.16 -1.61 9.52 37.16 0.35 -1.26 16 22 C -0.16 -1.35 8.83 37.16 0.33 -1.02 16 23 N -0.30 -6.20 11.13 33.41 0.37 -5.83 16 24 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.05 0.95 8.03 -51.93 -0.42 0.53 16 26 H 0.05 1.03 6.88 -51.93 -0.36 0.67 16 27 H 0.12 3.28 6.11 -52.48 -0.32 2.96 16 28 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 29 H 0.09 2.18 8.06 -52.48 -0.42 1.75 16 30 H 0.09 1.88 8.05 -52.49 -0.42 1.46 16 31 H 0.14 2.28 8.06 -52.49 -0.42 1.85 16 32 H 0.16 1.71 7.24 -52.49 -0.38 1.32 16 33 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.48 7.14 -51.93 -0.37 0.11 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 326.35 15.07 4.92 4.92 Total: -1.00 -29.78 326.35 -8.64 -38.42 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -5.62 Total: 5.98 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: -3.69 Total: -30.96 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.78 Total: -31.81 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.78 -8.64 -38.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242455290.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.387 kcal (2) G-P(sol) polarization free energy of solvation -29.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds