Wall clock time and date at job start Mon Mar 30 2020 01:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34821 * 125.89914 * 2 1 4 4 C 1.36429 * 107.61447 * 180.16388 * 3 2 1 5 5 C 1.48476 * 126.22743 * 179.84026 * 4 3 2 6 6 C 1.39304 * 120.11264 * 359.43936 * 5 4 3 7 7 C 1.38029 * 119.87532 * 179.70325 * 6 5 4 8 8 C 1.38310 * 120.12046 * 0.59334 * 7 6 5 9 9 C 1.50696 * 119.88506 * 179.70011 * 8 7 6 10 10 C 1.53002 * 109.47441 * 269.98258 * 9 8 7 11 11 C 1.52996 * 109.47162 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47184 * 179.97438 * 11 10 9 13 13 H 1.08006 * 120.00065 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00472 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99610 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00221 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47191 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47282 * 119.99960 * 16 14 12 19 19 H 1.48506 * 109.46782 * 239.99764 * 16 14 12 20 20 C 1.38321 * 120.23461 * 359.68143 * 8 7 6 21 21 C 1.38018 * 120.11593 * 0.02562 * 20 8 7 22 22 C 1.40856 * 107.55342 * 359.57555 * 4 3 2 23 23 N 1.30671 * 108.09565 * 0.26375 * 22 4 3 24 24 H 1.09002 * 109.46793 * 270.28617 * 1 2 3 25 25 H 1.08995 * 109.47177 * 30.28105 * 1 2 3 26 26 H 1.09004 * 109.47555 * 150.28581 * 1 2 3 27 27 H 1.08008 * 126.19161 * 0.02562 * 3 2 1 28 28 H 1.07995 * 120.05865 * 359.97438 * 6 5 4 29 29 H 1.08002 * 119.93569 * 180.30029 * 7 6 5 30 30 H 1.09011 * 109.47037 * 29.97851 * 9 8 7 31 31 H 1.09001 * 109.47224 * 149.97608 * 9 8 7 32 32 H 1.08994 * 109.46632 * 299.99483 * 10 9 8 33 33 H 1.08997 * 109.47007 * 59.99645 * 10 9 8 34 34 H 1.09003 * 109.47700 * 300.00005 * 11 10 9 35 35 H 1.09010 * 109.46855 * 59.99942 * 11 10 9 36 36 H 0.96996 * 120.00214 * 179.97438 * 15 14 12 37 37 H 1.08007 * 119.93733 * 180.02562 * 20 8 7 38 38 H 1.08008 * 120.05939 * 180.02562 * 21 20 8 39 39 H 1.08001 * 125.95240 * 180.22574 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.0921 0.0000 4 6 3.5509 0.6641 -0.0037 5 6 4.7599 1.5260 -0.0084 6 6 4.6294 2.9129 -0.0211 7 6 5.7565 3.7096 -0.0192 8 6 7.0138 3.1333 -0.0172 9 6 8.2408 4.0081 -0.0219 10 6 8.6557 4.2970 -1.4660 11 6 9.9010 5.1857 -1.4708 12 6 10.3100 5.4698 -2.8931 13 1 9.7385 5.0580 -3.7119 14 6 11.4137 6.2554 -3.1494 15 7 12.1093 6.7573 -2.1525 16 14 11.9202 6.6080 -4.9125 17 1 10.9798 5.9324 -5.8422 18 1 11.8881 8.0730 -5.1532 19 1 13.2958 6.0984 -5.1437 20 6 7.1490 1.7567 -0.0103 21 6 6.0285 0.9508 -0.0060 22 6 3.5330 -0.7443 0.0039 23 7 2.2858 -1.1343 0.0061 24 1 -0.3633 0.0051 1.0277 25 1 -0.3633 0.8874 -0.5182 26 1 -0.3634 -0.8925 -0.5094 27 1 1.9234 2.1199 0.0004 28 1 3.6481 3.3638 -0.0280 29 1 5.6564 4.7850 -0.0242 30 1 8.0201 4.9464 0.4873 31 1 9.0535 3.4970 0.4943 32 1 8.8764 3.3589 -1.9751 33 1 7.8430 4.8081 -1.9822 34 1 9.6800 6.1239 -0.9617 35 1 10.7139 4.6749 -0.9545 36 1 12.8860 7.3096 -2.3327 37 1 8.1331 1.3117 -0.0083 38 1 6.1351 -0.1240 -0.0003 39 1 4.3991 -1.3895 0.0068 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065156.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:45 Heat of formation + Delta-G solvation = 58.799131 kcal Electronic energy + Delta-G solvation = -18695.993100 eV Core-core repulsion = 15796.410672 eV Total energy + Delta-G solvation = -2899.582428 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.16415 -40.01616 -36.52137 -34.86439 -34.01840 -32.54951 -31.75274 -30.43824 -28.53819 -27.10314 -25.20970 -23.77150 -22.91718 -21.80796 -21.43184 -20.93280 -18.53007 -18.27128 -16.61881 -16.40424 -16.36439 -16.24707 -16.10397 -15.21334 -15.04780 -14.53782 -14.35678 -14.20506 -13.98004 -13.77902 -13.73140 -13.28338 -13.21252 -13.07981 -12.64545 -12.57687 -12.37006 -12.19163 -11.81621 -11.59391 -11.37856 -11.27691 -11.09774 -10.54620 -10.46806 -10.29020 -9.72609 -8.56508 -8.18673 -6.29915 0.22981 0.63200 1.00331 1.40114 1.40391 1.54096 1.64434 1.93639 2.41891 3.12674 3.13663 3.55721 3.86839 4.01042 4.08242 4.18978 4.25969 4.29193 4.41727 4.44940 4.59146 4.61515 4.68729 4.71030 4.76584 4.81385 4.94685 5.06451 5.20685 5.24939 5.30702 5.32672 5.50485 5.55558 5.71420 5.75137 5.78072 5.88191 5.93356 6.07864 6.21150 6.28641 6.67312 6.87223 7.39067 8.92940 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.038581 B = 0.002664 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.579232 B =10509.614546 C =10661.488891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.377 5.377 3 C 0.076 3.924 4 C -0.218 4.218 5 C -0.010 4.010 6 C -0.121 4.121 7 C -0.121 4.121 8 C -0.094 4.094 9 C -0.074 4.074 10 C -0.087 4.087 11 C 0.022 3.978 12 C -0.542 4.542 13 H 0.057 0.943 14 C -0.002 4.002 15 N -0.933 5.933 16 Si 0.965 3.035 17 H -0.263 1.263 18 H -0.276 1.276 19 H -0.277 1.277 20 C -0.122 4.122 21 C -0.122 4.122 22 C 0.055 3.945 23 N -0.332 5.332 24 H 0.088 0.912 25 H 0.116 0.884 26 H 0.091 0.909 27 H 0.209 0.791 28 H 0.144 0.856 29 H 0.127 0.873 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.047 0.953 34 H -0.007 1.007 35 H -0.008 1.008 36 H 0.264 0.736 37 H 0.124 0.876 38 H 0.138 0.862 39 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.205 -12.486 6.055 27.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.157 5.157 3 C -0.072 4.072 4 C -0.230 4.230 5 C -0.011 4.011 6 C -0.139 4.139 7 C -0.139 4.139 8 C -0.095 4.095 9 C -0.112 4.112 10 C -0.125 4.125 11 C -0.015 4.015 12 C -0.580 4.580 13 H 0.075 0.925 14 C -0.200 4.200 15 N -0.574 5.574 16 Si 0.789 3.211 17 H -0.187 1.187 18 H -0.202 1.202 19 H -0.203 1.203 20 C -0.140 4.140 21 C -0.140 4.140 22 C -0.131 4.131 23 N -0.153 5.153 24 H 0.107 0.893 25 H 0.134 0.866 26 H 0.109 0.891 27 H 0.226 0.774 28 H 0.162 0.838 29 H 0.145 0.855 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.012 0.988 35 H 0.010 0.990 36 H 0.072 0.928 37 H 0.142 0.858 38 H 0.156 0.844 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -25.081 -13.417 6.096 29.091 hybrid contribution 1.414 1.077 -0.687 1.905 sum -23.667 -12.341 5.409 27.234 Atomic orbital electron populations 1.22253 0.71664 1.06140 1.04826 1.48770 1.08151 1.03235 1.55573 1.23054 0.90141 0.94670 0.99331 1.19024 0.92636 0.92976 1.18334 1.18145 0.91197 0.92316 0.99479 1.21259 0.99041 0.92400 1.01175 1.21130 0.91869 1.00410 1.00500 1.20048 0.94990 0.94400 1.00026 1.20580 0.94899 0.98576 0.97099 1.21379 0.97243 0.98679 0.95171 1.19051 0.93044 0.93960 0.95403 1.21742 1.11772 1.30693 0.93830 0.92503 1.25995 0.96495 0.95634 1.01851 1.70102 1.19053 1.35105 1.33112 0.85400 0.78204 0.78058 0.79399 1.18742 1.20204 1.20281 1.21114 0.99271 0.92996 1.00619 1.21234 0.91297 1.00376 1.01113 1.24285 0.95465 0.94778 0.98585 1.77194 1.02397 1.09781 1.25961 0.89343 0.86557 0.89053 0.77419 0.83790 0.85468 0.91516 0.91704 0.93584 0.93423 0.98847 0.98955 0.92762 0.85766 0.84448 0.78474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 11.46 127.77 1.46 2.08 16 2 N -0.38 -6.18 4.00 -368.72 -1.48 -7.66 16 3 C 0.08 1.20 10.88 83.81 0.91 2.11 16 4 C -0.22 -4.52 6.04 -20.33 -0.12 -4.64 16 5 C -0.01 -0.23 5.88 -20.04 -0.12 -0.35 16 6 C -0.12 -2.71 9.57 22.48 0.22 -2.50 16 7 C -0.12 -3.25 9.68 22.24 0.22 -3.04 16 8 C -0.09 -2.88 5.14 -19.83 -0.10 -2.98 16 9 C -0.07 -2.62 5.34 29.85 0.16 -2.46 16 10 C -0.09 -3.74 5.14 30.59 0.16 -3.58 16 11 C 0.02 1.22 4.97 29.85 0.15 1.37 16 12 C -0.54 -31.81 9.11 25.60 0.23 -31.58 16 13 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 14 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 15 N -0.93 -57.75 13.29 21.45 0.28 -57.47 16 16 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 17 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 C -0.12 -3.41 9.68 22.24 0.22 -3.19 16 21 C -0.12 -2.95 9.58 22.47 0.22 -2.74 16 22 C 0.05 1.14 11.42 85.51 0.98 2.12 16 23 N -0.33 -7.34 12.54 -56.45 -0.71 -8.05 16 24 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 25 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 26 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.21 1.71 7.28 -2.91 -0.02 1.69 16 28 H 0.14 2.26 7.02 -2.91 -0.02 2.24 16 29 H 0.13 3.16 8.06 -2.91 -0.02 3.14 16 30 H 0.07 2.30 8.08 -2.38 -0.02 2.28 16 31 H 0.06 2.26 8.08 -2.39 -0.02 2.24 16 32 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 34 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 35 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 36 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 37 H 0.12 3.28 8.06 -2.91 -0.02 3.26 16 38 H 0.14 2.65 7.05 -2.91 -0.02 2.63 16 39 H 0.20 3.19 7.35 -2.91 -0.02 3.17 16 Total: -1.00 -73.60 334.05 6.18 -67.42 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 1.02 Total: 7.67 kcal Atomic # 6 Polarization: -54.08 SS G_CDS: 5.03 Total: -49.05 kcal Atomic # 7 Polarization: -71.28 SS G_CDS: -1.90 Total: -73.18 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -73.60 6.18 -67.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065156.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.219 kcal (2) G-P(sol) polarization free energy of solvation -73.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds