Wall clock time and date at job start Mon Mar 30 2020 01:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 5 5 N 1.46490 * 109.47559 * 295.00069 * 4 2 1 6 6 C 1.36935 * 120.00279 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99907 * 0.02562 * 6 5 4 8 8 C 1.38814 * 120.00242 * 180.02562 * 6 5 4 9 9 N 1.31617 * 119.99944 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99862 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47013 * 60.00503 * 10 8 6 12 12 H 1.48506 * 109.46765 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47528 * 300.00290 * 10 8 6 14 14 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 15 15 N 1.46498 * 109.47059 * 64.99625 * 14 2 1 16 16 C 1.34777 * 119.99828 * 179.72339 * 15 14 2 17 17 O 1.21283 * 120.00222 * 0.28168 * 16 15 14 18 18 C 1.50703 * 120.00290 * 180.27728 * 16 15 14 19 19 H 1.09005 * 110.48706 * 40.70111 * 18 16 15 20 20 C 1.54100 * 110.54766 * 278.00503 * 18 16 15 21 21 N 1.47383 * 103.70143 * 241.43848 * 20 18 16 22 22 C 1.33952 * 109.21124 * 359.88605 * 21 20 18 23 23 O 1.21585 * 123.04049 * 180.02562 * 22 21 20 24 24 N 1.33937 * 113.91550 * 0.07698 * 22 21 20 25 25 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 27 27 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 28 28 H 1.08998 * 109.46886 * 55.00501 * 4 2 1 29 29 H 1.09002 * 109.46923 * 174.99751 * 4 2 1 30 30 H 0.97002 * 120.00315 * 0.02562 * 5 4 2 31 31 H 0.96995 * 119.99957 * 180.02562 * 9 8 6 32 32 H 1.09004 * 109.47066 * 304.99893 * 14 2 1 33 33 H 1.08994 * 109.46974 * 185.00040 * 14 2 1 34 34 H 0.97001 * 120.00384 * 0.02562 * 15 14 2 35 35 H 1.08997 * 110.55258 * 359.97438 * 20 18 16 36 36 H 1.09001 * 110.55062 * 122.80789 * 20 18 16 37 37 H 0.97002 * 125.38320 * 179.97438 * 21 20 18 38 38 H 0.97006 * 125.41629 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 1.6525 0.0355 2.4424 6 6 2.0011 -0.4205 3.6856 7 1 2.5622 -1.3378 3.7866 8 6 1.6335 0.2962 4.8161 9 7 0.9493 1.4138 4.6931 10 14 2.1085 -0.3263 6.5121 11 1 3.5875 -0.4166 6.6099 12 1 1.6011 0.6132 7.5442 13 1 1.5150 -1.6699 6.7304 14 6 2.0400 -0.7213 -1.2492 15 7 1.6524 0.0353 -2.4423 16 6 2.0008 -0.4106 -3.6656 17 8 2.6308 -1.4407 -3.7789 18 6 1.6075 0.3708 -4.8927 19 1 1.7291 1.4401 -4.7193 20 6 0.1551 0.0501 -5.2957 21 7 0.2869 -0.5291 -6.6445 22 6 1.5808 -0.5503 -6.9906 23 8 1.9745 -0.9789 -8.0581 24 7 2.4015 -0.0575 -6.0539 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6054 -1.7197 1.2953 29 1 3.1263 -0.7993 1.2057 30 1 1.1483 0.8592 2.3518 31 1 0.6927 1.9148 5.4831 32 1 1.6054 -1.7199 -1.2950 33 1 3.1263 -0.7995 -1.2055 34 1 1.1488 0.8593 -2.3518 35 1 -0.2815 -0.6747 -4.6086 36 1 -0.4438 0.9603 -5.3249 37 1 -0.4473 -0.8439 -7.1948 38 1 3.3665 0.0071 -6.1296 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267997293.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:05 Heat of formation + Delta-G solvation = -46.425314 kcal Electronic energy + Delta-G solvation = -20277.719115 eV Core-core repulsion = 16962.724550 eV Total energy + Delta-G solvation = -3314.994565 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.148 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.61592 -39.53454 -37.05654 -36.40224 -34.52290 -33.34806 -32.64630 -30.37123 -29.47133 -26.63551 -25.51832 -24.03633 -22.43773 -22.10779 -20.87655 -20.00890 -18.35808 -17.93521 -17.04757 -16.68986 -16.17936 -15.85368 -15.56069 -14.87277 -14.68602 -14.40650 -14.22977 -13.95807 -13.68397 -13.42449 -13.16558 -12.88979 -12.58465 -12.34463 -12.12435 -11.13468 -10.96965 -10.78068 -10.68561 -10.65543 -10.54919 -10.40893 -10.10128 -9.77586 -9.71660 -9.24417 -9.22900 -8.92068 -6.97830 -5.81859 -3.10447 2.13684 2.42241 2.68047 3.00795 3.41467 3.45974 3.46820 3.62117 3.82226 4.26096 4.38373 4.54807 4.78770 4.90356 5.01825 5.10586 5.19966 5.27719 5.52743 5.69864 5.85275 5.86709 6.00443 6.13210 6.26840 6.33500 6.57247 6.62144 6.69392 6.77349 6.78634 6.98920 7.23291 7.65701 7.90395 8.28498 8.37402 9.48732 10.05250 10.39877 11.41059 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.062598 B = 0.002761 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.193431 B =10137.172755 C =10364.846633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.077 0.923 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.241 4.241 7 H 0.070 0.930 8 C -0.013 4.013 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.126 3.874 15 N -0.718 5.718 16 C 0.497 3.503 17 O -0.523 6.523 18 C 0.102 3.898 19 H 0.118 0.882 20 C 0.104 3.896 21 N -0.740 5.740 22 C 0.706 3.294 23 O -0.585 6.585 24 N -0.714 5.714 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.022 0.978 29 H 0.021 0.979 30 H 0.384 0.616 31 H 0.256 0.744 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.402 0.598 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.432 0.568 38 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.671 1.827 -19.313 19.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.372 4.372 7 H 0.088 0.912 8 C -0.209 4.209 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.212 1.212 12 H -0.217 1.217 13 H -0.212 1.212 14 C 0.002 3.998 15 N -0.370 5.370 16 C 0.280 3.720 17 O -0.398 6.398 18 C -0.009 4.009 19 H 0.135 0.865 20 C -0.021 4.021 21 N -0.403 5.403 22 C 0.405 3.595 23 O -0.462 6.462 24 N -0.376 5.376 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.061 0.939 28 H 0.040 0.960 29 H 0.039 0.961 30 H 0.218 0.782 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.237 0.763 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.274 0.726 38 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -2.938 0.750 -19.782 20.013 hybrid contribution -0.097 0.330 1.066 1.120 sum -3.035 1.080 -18.717 18.992 Atomic orbital electron populations 1.21798 0.94577 1.01988 1.01552 1.21562 0.96768 1.00536 0.94110 0.90416 1.20571 0.96640 0.94221 0.85370 1.42318 1.66960 1.27682 1.00566 1.19189 1.28846 1.05490 0.83650 0.91206 1.24733 1.00938 0.97380 0.97882 1.69637 1.43445 1.16589 1.28679 0.86253 0.78048 0.77731 0.84072 1.21246 1.21676 1.21238 1.21476 1.00331 0.95304 0.82680 1.46060 1.57224 1.28006 1.05747 1.20707 0.80479 0.86209 0.84599 1.90775 1.38958 1.23728 1.86329 1.21871 0.91883 1.00340 0.86765 0.86480 1.22329 0.94199 1.00475 0.85134 1.45123 1.07694 1.68542 1.18969 1.15849 0.81856 0.78144 0.83658 1.91008 1.78110 1.53312 1.23801 1.44814 1.09796 1.67593 1.15423 0.92791 0.91081 0.93864 0.96006 0.96139 0.78204 0.93442 0.91158 0.91157 0.76279 0.89299 0.88411 0.72552 0.72276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.94 37.16 0.33 -1.47 16 2 C -0.11 -1.49 2.46 -90.62 -0.22 -1.72 16 3 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 4 C 0.16 2.98 5.65 -4.05 -0.02 2.96 16 5 N -0.73 -17.54 5.33 -59.91 -0.32 -17.86 16 6 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 7 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 8 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 9 N -0.93 -27.45 13.06 55.49 0.72 -26.73 16 10 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.13 1.47 5.06 -4.04 -0.02 1.45 16 15 N -0.72 -6.15 5.28 -60.30 -0.32 -6.47 16 16 C 0.50 4.87 6.94 -10.98 -0.08 4.79 16 17 O -0.52 -7.70 16.58 5.55 0.09 -7.61 16 18 C 0.10 0.66 4.16 -68.21 -0.28 0.37 16 19 H 0.12 0.37 8.14 -51.93 -0.42 -0.06 16 20 C 0.10 0.51 7.72 -2.98 -0.02 0.49 16 21 N -0.74 -5.58 6.39 -64.47 -0.41 -5.99 16 22 C 0.71 8.10 8.92 -88.40 -0.79 7.31 16 23 O -0.58 -9.29 18.05 5.29 0.10 -9.19 16 24 N -0.71 -6.56 5.62 -59.33 -0.33 -6.90 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 1.11 7.18 -51.93 -0.37 0.73 16 27 H 0.04 0.40 7.18 -51.93 -0.37 0.02 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.38 9.54 6.85 -40.82 -0.28 9.27 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.40 2.31 7.66 -40.82 -0.31 1.99 16 35 H 0.09 0.44 7.72 -51.93 -0.40 0.03 16 36 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.43 2.48 8.96 -40.82 -0.37 2.11 16 38 H 0.43 3.75 8.96 -40.82 -0.37 3.39 16 LS Contribution 322.31 15.07 4.86 4.86 Total: -1.00 -36.61 322.31 -7.39 -44.00 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.40 Total: 7.92 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -1.35 Total: 7.00 kcal Atomic # 7 Polarization: -63.29 SS G_CDS: -0.66 Total: -63.94 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: 0.19 Total: -16.80 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -36.61 -7.39 -44.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267997293.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.429 kcal (2) G-P(sol) polarization free energy of solvation -36.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds