Wall clock time and date at job start Mon Mar 30 2020 01:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47427 * 2 1 4 4 C 1.53006 * 109.46804 * 239.99832 * 2 1 3 5 5 N 1.46496 * 109.47007 * 184.99923 * 4 2 1 6 6 C 1.34780 * 120.00272 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99506 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00336 * 179.97438 * 6 5 4 9 9 H 1.09002 * 110.48561 * 40.70750 * 8 6 5 10 10 C 1.54101 * 110.54924 * 278.00458 * 8 6 5 11 11 N 1.47391 * 103.69798 * 241.44105 * 10 8 6 12 12 C 1.33946 * 109.21321 * 359.88470 * 11 10 8 13 13 O 1.21585 * 123.03842 * 180.02562 * 12 11 10 14 14 N 1.33943 * 113.91655 * 0.07700 * 12 11 10 15 15 N 1.46502 * 109.47126 * 120.00597 * 2 1 3 16 16 C 1.46494 * 120.00062 * 59.99279 * 15 2 1 17 17 C 1.36939 * 119.99420 * 239.99854 * 15 2 1 18 18 H 1.08000 * 120.00200 * 336.19048 * 17 15 2 19 19 C 1.38809 * 119.99473 * 156.19423 * 17 15 2 20 20 N 1.31621 * 120.00512 * 330.45308 * 19 17 15 21 21 Si 1.86803 * 119.99814 * 150.46193 * 19 17 15 22 22 H 1.48499 * 109.47225 * 179.97438 * 21 19 17 23 23 H 1.48492 * 109.47385 * 59.99673 * 21 19 17 24 24 H 1.48497 * 109.47170 * 299.99581 * 21 19 17 25 25 H 1.08999 * 109.46965 * 300.00161 * 1 2 3 26 26 H 1.09004 * 109.46847 * 59.99675 * 1 2 3 27 27 H 1.08995 * 109.46765 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47793 * 305.00496 * 4 2 1 29 29 H 1.09005 * 109.46608 * 65.00684 * 4 2 1 30 30 H 0.97009 * 120.00120 * 0.02562 * 5 4 2 31 31 H 1.08994 * 110.55142 * 359.97438 * 10 8 6 32 32 H 1.09004 * 110.54693 * 122.81198 * 10 8 6 33 33 H 0.97003 * 125.37347 * 179.97438 * 11 10 8 34 34 H 0.96997 * 125.40963 * 179.97438 * 14 12 11 35 35 H 1.08996 * 109.47354 * 273.02437 * 16 15 2 36 36 H 1.08996 * 109.47420 * 33.03395 * 16 15 2 37 37 H 1.09004 * 109.46554 * 153.02895 * 16 15 2 38 38 H 0.97001 * 119.99566 * 354.60581 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8265 -1.1907 6 6 4.1731 -1.4284 -2.1913 7 8 3.5700 -1.8826 -3.1405 8 6 5.6750 -1.5360 -2.1313 9 1 5.9999 -1.7803 -1.1199 10 6 6.3308 -0.2257 -2.6084 11 7 7.1145 -0.6366 -3.7871 12 6 6.9609 -1.9529 -3.9815 13 8 7.4999 -2.5563 -4.8891 14 7 6.1589 -2.5441 -3.0864 15 7 2.0184 -0.6907 1.1961 16 6 1.6644 -2.0932 1.4279 17 6 2.8057 -0.0252 2.0975 18 1 3.3791 0.8341 1.7826 19 6 2.8668 -0.4552 3.4159 20 7 1.8308 -1.0573 3.9605 21 14 4.4194 -0.1793 4.4173 22 1 4.2299 -0.7258 5.7850 23 1 4.7022 1.2761 4.5011 24 1 5.5600 -0.8682 3.7621 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6053 -1.7198 -1.2953 29 1 1.7517 -0.1583 -2.1370 30 1 3.9824 -0.4628 -0.4316 31 1 5.5701 0.5027 -2.8892 32 1 6.9833 0.1794 -1.8349 33 1 7.6567 -0.0471 -4.3343 34 1 5.9328 -3.4872 -3.0708 35 1 0.7103 -2.1453 1.9524 36 1 1.5821 -2.6100 0.4718 37 1 2.4375 -2.5680 2.0321 38 1 0.9985 -1.1310 3.4678 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275912961.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:34 Heat of formation + Delta-G solvation = -30.958694 kcal Electronic energy + Delta-G solvation = -21401.315427 eV Core-core repulsion = 18086.991545 eV Total energy + Delta-G solvation = -3314.323882 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.148 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.33259 -39.16879 -37.07091 -36.18911 -34.13301 -33.09620 -32.26278 -29.68207 -29.12065 -26.28606 -25.97109 -23.72131 -22.80843 -21.87526 -20.34739 -19.59956 -18.04348 -17.67221 -17.36639 -16.45264 -15.80043 -15.65034 -15.31056 -14.66471 -14.45238 -14.05727 -13.90532 -13.71621 -13.59760 -13.24229 -12.85726 -12.66771 -12.25488 -12.08584 -11.68057 -11.34866 -10.89268 -10.81757 -10.66298 -10.42321 -10.32469 -10.15175 -10.11926 -9.58634 -9.52248 -8.94825 -8.78133 -8.47124 -7.09762 -6.20893 -3.35079 2.46717 2.74607 2.97415 3.34453 3.39301 3.41650 3.60291 3.90268 4.14091 4.45817 4.67359 4.76132 5.07709 5.10293 5.24533 5.30634 5.40432 5.46581 5.70991 5.89139 5.98403 6.09301 6.22978 6.44319 6.57837 6.64625 6.75479 6.84060 6.85887 7.01641 7.02369 7.22997 7.75354 7.81616 8.33361 8.43425 8.51498 8.97307 9.71082 10.11167 11.07187 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.019871 B = 0.005255 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.722999 B = 5327.459695 C = 6230.596840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.158 3.842 3 H 0.071 0.929 4 C 0.107 3.893 5 N -0.698 5.698 6 C 0.496 3.504 7 O -0.539 6.539 8 C 0.101 3.899 9 H 0.119 0.881 10 C 0.106 3.894 11 N -0.740 5.740 12 C 0.707 3.293 13 O -0.590 6.590 14 N -0.713 5.713 15 N -0.595 5.595 16 C 0.136 3.864 17 C -0.369 4.369 18 H 0.060 0.940 19 C -0.016 4.016 20 N -0.906 5.906 21 Si 1.058 2.942 22 H -0.287 1.287 23 H -0.293 1.293 24 H -0.293 1.293 25 H 0.058 0.942 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.413 0.587 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.431 0.569 34 H 0.434 0.566 35 H 0.009 0.991 36 H 0.015 0.985 37 H 0.050 0.950 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.908 3.245 -8.578 10.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.049 3.951 3 H 0.089 0.911 4 C -0.018 4.018 5 N -0.350 5.350 6 C 0.279 3.721 7 O -0.417 6.417 8 C -0.009 4.009 9 H 0.137 0.863 10 C -0.020 4.020 11 N -0.403 5.403 12 C 0.406 3.594 13 O -0.468 6.468 14 N -0.374 5.374 15 N -0.319 5.319 16 C -0.009 4.009 17 C -0.497 4.497 18 H 0.078 0.922 19 C -0.220 4.220 20 N -0.544 5.544 21 Si 0.888 3.112 22 H -0.212 1.212 23 H -0.220 1.220 24 H -0.220 1.220 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.250 0.750 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.272 0.728 34 H 0.276 0.724 35 H 0.027 0.973 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.454 2.320 -8.190 10.682 hybrid contribution -0.709 0.435 -1.049 1.339 sum 5.745 2.754 -9.239 11.222 Atomic orbital electron populations 1.22204 0.97568 1.01292 1.00815 1.20649 0.92406 0.95681 0.86350 0.91065 1.21945 0.79288 1.01307 0.99300 1.45900 1.08484 1.57866 1.22748 1.20632 0.89224 0.79118 0.83148 1.90718 1.69630 1.47824 1.33490 1.21886 0.92711 0.89753 0.96581 0.86307 1.22324 0.95574 0.95130 0.88970 1.45113 1.53474 1.08652 1.33102 1.15839 0.79581 0.82283 0.81744 1.90985 1.54721 1.66889 1.34230 1.44799 1.50585 1.10972 1.31079 1.44048 1.58795 1.06862 1.22214 1.20898 0.98599 0.84873 0.96524 1.19898 1.22239 1.16165 0.91408 0.92221 1.25746 1.02783 0.99509 0.93985 1.70786 1.01667 1.44225 1.37770 0.83620 0.75412 0.75790 0.76364 1.21217 1.21987 1.22029 0.92272 0.93702 0.93273 0.92110 0.92273 0.75014 0.89468 0.88392 0.72752 0.72406 0.97311 0.96615 0.93113 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.19 37.16 0.34 -2.25 16 2 C 0.16 2.74 2.88 -67.92 -0.20 2.55 16 3 H 0.07 1.25 7.87 -51.93 -0.41 0.84 16 4 C 0.11 1.69 4.91 -4.04 -0.02 1.67 16 5 N -0.70 -10.06 5.39 -60.29 -0.32 -10.38 16 6 C 0.50 7.09 6.94 -10.98 -0.08 7.01 16 7 O -0.54 -9.80 16.58 5.55 0.09 -9.70 16 8 C 0.10 1.11 4.16 -68.20 -0.28 0.82 16 9 H 0.12 1.07 8.14 -51.93 -0.42 0.64 16 10 C 0.11 0.91 7.72 -2.98 -0.02 0.89 16 11 N -0.74 -7.65 6.39 -64.47 -0.41 -8.07 16 12 C 0.71 10.09 8.92 -88.40 -0.79 9.30 16 13 O -0.59 -10.75 18.05 5.29 0.10 -10.66 16 14 N -0.71 -9.03 5.62 -59.33 -0.33 -9.36 16 15 N -0.60 -12.59 2.16 -173.48 -0.37 -12.96 16 16 C 0.14 2.93 8.06 59.84 0.48 3.41 16 17 C -0.37 -8.78 9.12 -15.06 -0.14 -8.92 16 18 H 0.06 1.39 7.95 -52.49 -0.42 0.97 16 19 C -0.02 -0.41 4.61 -17.43 -0.08 -0.49 16 20 N -0.91 -25.20 12.74 55.49 0.71 -24.49 16 21 Si 1.06 22.71 30.01 -169.99 -5.10 17.61 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.29 -5.95 7.11 56.52 0.40 -5.55 16 25 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.81 7.67 -51.93 -0.40 0.41 16 28 H 0.06 1.04 6.90 -51.93 -0.36 0.69 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.41 5.87 7.89 -40.82 -0.32 5.54 16 31 H 0.09 0.72 7.72 -51.93 -0.40 0.32 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.43 3.50 8.96 -40.82 -0.37 3.13 16 34 H 0.43 5.24 8.96 -40.82 -0.37 4.87 16 35 H 0.01 0.20 6.87 -51.93 -0.36 -0.15 16 36 H 0.02 0.30 6.54 -51.93 -0.34 -0.04 16 37 H 0.05 1.19 7.27 -51.93 -0.38 0.81 16 38 H 0.27 7.64 6.37 -40.82 -0.26 7.38 16 LS Contribution 316.44 15.07 4.77 4.77 Total: -1.00 -32.70 316.44 -6.94 -39.65 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -5.28 Total: 9.61 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: -0.78 Total: 13.99 kcal Atomic # 7 Polarization: -64.53 SS G_CDS: -0.74 Total: -65.26 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: 0.19 Total: -20.36 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.10 Total: 17.61 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.70 -6.94 -39.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275912961.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.688 kcal (2) G-P(sol) polarization free energy of solvation -32.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds