Wall clock time and date at job start Mon Mar 30 2020 01:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.50699 * 109.47093 * 179.97438 * 13 12 2 15 15 C 1.38233 * 119.99877 * 269.73365 * 14 13 12 16 16 C 1.38242 * 119.99414 * 179.78983 * 15 14 13 17 17 C 1.38228 * 120.00058 * 0.43311 * 16 15 14 18 18 C 1.50707 * 119.99932 * 179.83500 * 17 16 15 19 19 C 1.47193 * 115.55080 * 214.39765 * 18 17 16 20 20 N 9.48083 * 95.73284 * 254.33529 * 2 1 3 21 21 C 1.53002 * 117.49472 * 68.72565 * 18 17 16 22 22 C 1.52999 * 117.49589 * 0.06767 * 18 17 16 23 23 C 1.38229 * 120.00211 * 359.81673 * 17 16 15 24 24 C 1.38235 * 120.00287 * 359.97438 * 23 17 16 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.00894 * 111.00044 * 208.95721 * 12 2 1 30 30 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 31 31 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 32 32 H 1.07997 * 120.00186 * 359.97438 * 15 14 13 33 33 H 1.07998 * 119.99534 * 180.27077 * 16 15 14 34 34 H 1.08997 * 117.50211 * 0.02562 * 21 18 17 35 35 H 1.09007 * 117.49583 * 145.02238 * 21 18 17 36 36 H 1.09003 * 117.50207 * 214.97527 * 22 18 17 37 37 H 1.09003 * 117.50492 * 0.02562 * 22 18 17 38 38 H 1.08002 * 120.00011 * 179.97438 * 23 17 16 39 39 H 1.07997 * 120.00409 * 179.97438 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5885 -0.5212 -3.5558 15 6 3.9443 -0.5682 -3.8209 16 6 4.4088 -1.2544 -4.9275 17 6 3.5168 -1.8859 -5.7737 18 6 4.0229 -2.6308 -6.9821 19 6 3.1519 -2.5835 -8.1678 20 7 2.4770 -2.5471 -9.0830 21 6 4.8155 -3.9166 -6.7385 22 6 5.5346 -2.6526 -7.2165 23 6 2.1605 -1.8344 -5.5115 24 6 1.6963 -1.1520 -4.4026 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 0.7089 1.1611 3.4845 29 1 2.9172 -1.1204 -1.0288 30 1 1.0871 0.6165 -2.5525 31 1 2.7588 1.0464 -2.1181 32 1 4.6410 -0.0715 -3.1619 33 1 5.4684 -1.2948 -5.1321 34 1 4.9705 -4.2240 -5.7043 35 1 4.6923 -4.7275 -7.4565 36 1 5.8844 -2.6325 -8.2487 37 1 6.1633 -2.1287 -6.4965 38 1 1.4636 -2.3275 -6.1730 39 1 0.6367 -1.1114 -4.1980 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308505475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:27 Heat of formation + Delta-G solvation = 75.927697 kcal Electronic energy + Delta-G solvation = -19153.866389 eV Core-core repulsion = 16255.026711 eV Total energy + Delta-G solvation = -2898.839677 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.14373 -38.01070 -36.00499 -35.58121 -32.89176 -31.04773 -30.80717 -28.24098 -25.70067 -25.08738 -23.72172 -23.07822 -22.13516 -20.84898 -19.78346 -18.09537 -16.81665 -16.26431 -15.31715 -15.01116 -14.83508 -14.62624 -13.95020 -13.82166 -13.78178 -13.68112 -13.46160 -12.98510 -12.78567 -12.57380 -12.29113 -11.95824 -11.78773 -11.55503 -11.12029 -11.08624 -10.96352 -10.81345 -10.73282 -10.56055 -10.29189 -10.14973 -9.96034 -8.88347 -8.84436 -8.52392 -8.42244 -7.30941 -6.04875 -4.11641 1.28100 1.48721 2.25936 2.45047 3.29605 3.34308 3.36905 3.42956 3.49726 3.85590 4.09793 4.38682 4.46137 4.58986 4.89075 5.00030 5.10191 5.20758 5.23434 5.26324 5.42988 5.50737 5.60166 5.63657 5.66841 5.91992 5.98036 6.19116 6.26157 6.47175 6.51817 6.81249 6.89099 7.04434 7.11362 7.20175 7.27471 7.46684 7.75308 7.86649 8.24693 8.34770 8.62732 8.98451 9.54401 11.01396 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033067 B = 0.003273 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.567815 B = 8551.507017 C = 8983.226234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.212 3.788 3 H 0.001 0.999 4 C -0.520 4.520 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.277 1.277 12 N -0.682 5.682 13 C 0.092 3.908 14 C -0.058 4.058 15 C -0.111 4.111 16 C -0.110 4.110 17 C -0.062 4.062 18 C -0.008 4.008 19 C 0.247 3.753 20 N -0.429 5.429 21 C -0.137 4.137 22 C -0.146 4.146 23 C -0.109 4.109 24 C -0.094 4.094 25 H 0.032 0.968 26 H 0.081 0.919 27 H 0.004 0.996 28 H 0.262 0.738 29 H 0.332 0.668 30 H 0.073 0.927 31 H 0.030 0.970 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.118 0.882 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.092 -5.256 -16.222 19.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 H 0.019 0.981 4 C -0.558 4.558 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.213 1.213 10 H -0.202 1.202 11 H -0.203 1.203 12 N -0.313 5.313 13 C -0.037 4.037 14 C -0.059 4.059 15 C -0.130 4.130 16 C -0.128 4.128 17 C -0.063 4.063 18 C -0.011 4.011 19 C -0.070 4.070 20 N -0.103 5.103 21 C -0.175 4.175 22 C -0.184 4.184 23 C -0.127 4.127 24 C -0.113 4.113 25 H 0.051 0.949 26 H 0.099 0.901 27 H 0.023 0.977 28 H 0.072 0.928 29 H 0.149 0.851 30 H 0.091 0.909 31 H 0.048 0.952 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.136 0.864 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.137 0.863 38 H 0.133 0.867 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.323 -5.304 -17.629 19.813 hybrid contribution 1.126 0.120 1.437 1.830 sum 8.449 -5.184 -16.192 18.986 Atomic orbital electron populations 1.21723 0.97859 0.99382 0.99365 1.19126 0.92651 0.92344 0.85450 0.98096 1.21221 1.31624 1.12569 0.90427 0.92228 1.24922 0.95020 0.94980 0.99052 1.69888 1.36532 1.22842 1.23617 0.86574 0.79068 0.79807 0.82029 1.21303 1.20162 1.20307 1.60800 1.32216 1.32686 1.05585 1.20944 1.00045 0.93384 0.89309 1.20147 0.93151 0.96775 0.95823 1.21068 0.95299 0.99463 0.97133 1.20848 0.99094 0.97912 0.94960 1.18470 0.93747 1.00010 0.94101 1.16847 0.91115 1.04850 0.88318 1.27673 0.93316 0.92967 0.93026 1.81333 1.09057 1.08846 1.11110 1.23314 0.99396 0.90388 1.04443 1.23324 0.90210 1.00891 1.03944 1.20871 0.94374 0.99625 0.97862 1.21035 1.00151 0.96469 0.93603 0.94928 0.90075 0.97723 0.92835 0.85112 0.90892 0.95214 0.85794 0.85729 0.86355 0.87607 0.87571 0.86300 0.86731 0.85637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.08 9.19 37.16 0.34 -2.74 16 2 C 0.21 5.26 2.60 -68.87 -0.18 5.08 16 3 H 0.00 0.04 7.80 -51.93 -0.40 -0.37 16 4 C -0.52 -14.04 8.59 -34.44 -0.30 -14.34 16 5 H 0.06 1.58 7.62 -52.49 -0.40 1.18 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.17 11.32 55.43 0.63 -24.55 16 8 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 9 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.68 -14.14 6.29 -109.22 -0.69 -14.83 16 13 C 0.09 1.61 5.61 -4.97 -0.03 1.58 16 14 C -0.06 -0.85 5.39 -104.62 -0.56 -1.42 16 15 C -0.11 -1.39 9.70 -39.58 -0.38 -1.77 16 16 C -0.11 -1.14 9.39 -39.58 -0.37 -1.51 16 17 C -0.06 -0.67 5.43 -104.63 -0.57 -1.23 16 18 C -0.01 -0.07 2.43 -158.45 -0.39 -0.45 16 19 C 0.25 2.74 14.09 -20.71 -0.29 2.45 16 20 N -0.43 -5.75 18.55 42.22 0.78 -4.96 16 21 C -0.14 -0.84 9.91 -26.69 -0.26 -1.10 16 22 C -0.15 -0.82 9.55 -26.69 -0.25 -1.08 16 23 C -0.11 -1.35 9.32 -39.59 -0.37 -1.72 16 24 C -0.09 -1.31 9.70 -39.58 -0.38 -1.69 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 27 H 0.00 0.08 7.45 -51.93 -0.39 -0.30 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.33 6.73 8.22 -39.30 -0.32 6.41 16 30 H 0.07 1.29 7.38 -51.93 -0.38 0.91 16 31 H 0.03 0.52 8.00 -51.93 -0.42 0.10 16 32 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.12 0.92 5.93 -52.49 -0.31 0.60 16 34 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.11 0.55 8.14 -51.92 -0.42 0.13 16 36 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.12 0.52 6.08 -51.93 -0.32 0.21 16 38 H 0.11 1.34 7.47 -52.49 -0.39 0.95 16 39 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 332.24 15.07 5.01 5.01 Total: -1.00 -29.88 332.24 -8.70 -38.58 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.32 Total: 3.14 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -4.09 Total: -18.34 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.72 Total: -44.34 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.88 -8.70 -38.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308505475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.510 kcal (2) G-P(sol) polarization free energy of solvation -29.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds