Wall clock time and date at job start Mon Mar 30 2020 01:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.53002 * 109.47645 * 174.99822 * 4 2 1 6 6 N 1.46497 * 109.47155 * 179.97438 * 5 4 2 7 7 C 1.36937 * 119.99710 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00103 * 0.02562 * 7 6 5 9 9 C 1.38815 * 120.00080 * 180.02562 * 7 6 5 10 10 N 1.31617 * 119.99974 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99690 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.46919 * 90.00706 * 11 9 7 13 13 H 1.48506 * 109.47145 * 210.00095 * 11 9 7 14 14 H 1.48499 * 109.47413 * 330.00086 * 11 9 7 15 15 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 16 16 C 1.34775 * 119.99693 * 275.00198 * 15 2 1 17 17 O 1.21274 * 120.00425 * 359.97438 * 16 15 2 18 18 C 1.50706 * 119.99541 * 179.97438 * 16 15 2 19 19 H 1.09002 * 110.49091 * 319.29106 * 18 16 15 20 20 C 1.54100 * 110.54876 * 81.99618 * 18 16 15 21 21 N 1.47063 * 103.86017 * 118.59148 * 20 18 16 22 22 C 1.33943 * 109.18049 * 0.02562 * 21 20 18 23 23 O 1.21590 * 123.04500 * 179.97438 * 22 21 20 24 24 N 1.34268 * 113.95961 * 0.07768 * 22 21 20 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 29 29 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 30 30 H 1.08993 * 109.47092 * 300.00720 * 5 4 2 31 31 H 1.09007 * 109.46700 * 60.00493 * 5 4 2 32 32 H 0.97001 * 120.00219 * 0.02562 * 6 5 4 33 33 H 0.97006 * 120.00090 * 179.97438 * 10 9 7 34 34 H 0.97000 * 120.00117 * 94.99845 * 15 2 1 35 35 H 1.09004 * 110.54868 * 237.18491 * 20 18 16 36 36 H 1.08997 * 110.55411 * 0.02562 * 20 18 16 37 37 H 0.96999 * 125.41025 * 179.97438 * 21 20 18 38 38 H 0.97002 * 125.57929 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3137 6 7 4.0532 -1.3046 -2.5095 7 6 5.3952 -1.3405 -2.7794 8 1 6.0936 -0.8597 -2.1106 9 6 5.8579 -1.9950 -3.9128 10 7 7.1479 -2.0300 -4.1719 11 14 4.6499 -2.8273 -5.0693 12 1 4.2138 -1.8606 -6.1089 13 1 5.3072 -3.9897 -5.7190 14 1 3.4685 -3.2932 -4.2996 15 7 2.0184 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3571 17 8 1.8590 1.1586 2.4115 18 6 2.6489 -0.7288 3.5878 19 1 2.2138 -1.7259 3.6567 20 6 4.1877 -0.8097 3.5759 21 7 4.5889 -0.0636 4.7781 22 6 3.4929 0.3859 5.4033 23 8 3.5349 1.0364 6.4296 24 7 2.3431 0.0516 4.7959 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.7516 -1.7716 -1.2056 29 1 1.6054 -0.2618 -2.1370 30 1 3.8532 0.4368 -1.3573 31 1 3.9995 -1.0729 -0.4260 32 1 3.4258 -1.7361 -3.1105 33 1 7.4713 -2.4877 -4.9637 34 1 2.2491 -1.6318 1.1527 35 1 4.5169 -1.8467 3.6416 36 1 4.5890 -0.3355 2.6803 37 1 5.5022 0.0795 5.0720 38 1 1.4536 0.2878 5.1024 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320528375.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:07 Heat of formation + Delta-G solvation = -76.018078 kcal Electronic energy + Delta-G solvation = -20730.828085 eV Core-core repulsion = 17414.550281 eV Total energy + Delta-G solvation = -3316.277804 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.148 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.33219 -40.49992 -38.03698 -37.29046 -36.16181 -34.01708 -33.76340 -32.55250 -30.07674 -29.52355 -25.77314 -25.02283 -23.13161 -22.84584 -22.18219 -21.51877 -19.71536 -19.03836 -18.60237 -17.46048 -17.22388 -16.64591 -16.47686 -16.10362 -15.77327 -15.63269 -15.12830 -14.98827 -14.89667 -14.75599 -14.26918 -13.92660 -13.86113 -13.35270 -13.17500 -12.94915 -12.89196 -12.37971 -12.14815 -11.94773 -11.81545 -11.70739 -11.59768 -11.31146 -10.94705 -10.56216 -10.09585 -9.83570 -9.26918 -8.00161 -5.34288 1.41402 1.42641 1.46145 1.53637 1.69793 1.96798 2.23273 2.52029 3.05130 3.31921 3.32064 3.47771 3.63425 3.99706 4.06375 4.15171 4.29280 4.35604 4.59059 4.64160 4.65469 4.71993 4.81721 4.88824 5.04473 5.24151 5.30047 5.36916 5.57016 5.78337 5.89724 6.19399 6.23515 6.25943 6.56481 7.11438 7.21508 7.49895 7.87100 8.06554 9.21360 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.023188 B = 0.004011 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.218033 B = 6978.995233 C = 7917.175368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.150 3.850 3 H 0.064 0.936 4 C -0.124 4.124 5 C 0.154 3.846 6 N -0.758 5.758 7 C -0.237 4.237 8 H 0.053 0.947 9 C -0.066 4.066 10 N -0.986 5.986 11 Si 0.958 3.042 12 H -0.283 1.283 13 H -0.298 1.298 14 H -0.241 1.241 15 N -0.702 5.702 16 C 0.502 3.498 17 O -0.574 6.574 18 C 0.108 3.892 19 H 0.166 0.834 20 C 0.100 3.900 21 N -0.731 5.731 22 C 0.695 3.305 23 O -0.639 6.639 24 N -0.713 5.713 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.006 0.994 31 H 0.037 0.963 32 H 0.368 0.632 33 H 0.257 0.743 34 H 0.419 0.581 35 H 0.139 0.861 36 H 0.083 0.917 37 H 0.439 0.561 38 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.047 -3.848 13.248 20.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.045 3.955 3 H 0.082 0.918 4 C -0.162 4.162 5 C 0.028 3.972 6 N -0.404 5.404 7 C -0.368 4.368 8 H 0.071 0.929 9 C -0.257 4.257 10 N -0.637 5.637 11 Si 0.785 3.215 12 H -0.209 1.209 13 H -0.225 1.225 14 H -0.165 1.165 15 N -0.355 5.355 16 C 0.286 3.714 17 O -0.453 6.453 18 C -0.001 4.001 19 H 0.183 0.817 20 C -0.025 4.025 21 N -0.394 5.394 22 C 0.394 3.606 23 O -0.521 6.521 24 N -0.374 5.374 25 H 0.091 0.909 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.024 0.976 31 H 0.055 0.945 32 H 0.201 0.799 33 H 0.066 0.934 34 H 0.257 0.743 35 H 0.157 0.843 36 H 0.101 0.899 37 H 0.282 0.718 38 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -15.023 -2.660 13.814 20.581 hybrid contribution 0.161 -0.279 -0.865 0.923 sum -14.862 -2.940 12.948 19.930 Atomic orbital electron populations 1.22077 0.93529 1.03249 1.02261 1.20815 0.94851 0.96387 0.83433 0.91807 1.21981 0.94104 1.02530 0.97568 1.20797 0.93617 0.94246 0.88583 1.42703 1.03432 1.66450 1.27854 1.19022 0.84075 1.27851 1.05836 0.92913 1.25573 0.97509 1.02184 1.00444 1.69901 1.14405 1.49922 1.29442 0.85365 0.79286 0.77788 0.79043 1.20897 1.22527 1.16485 1.45998 1.65900 1.14941 1.08640 1.21203 0.77503 0.87100 0.85552 1.90745 1.51331 1.17758 1.85418 1.22154 0.97147 0.97793 0.83041 0.81719 1.22584 0.90435 1.00748 0.88722 1.45082 1.08164 1.58499 1.27605 1.16245 0.82640 0.79067 0.82672 1.90948 1.86936 1.46948 1.27275 1.44889 1.07956 1.58922 1.25619 0.90868 0.93462 0.90463 0.88979 0.89781 0.97564 0.94534 0.79856 0.93383 0.74317 0.84289 0.89912 0.71788 0.72160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.48 71.98 0.68 -1.71 16 2 C 0.15 2.88 2.58 44.99 0.12 3.00 16 3 H 0.06 1.61 7.58 -2.39 -0.02 1.59 16 4 C -0.12 -2.63 4.87 30.59 0.15 -2.48 16 5 C 0.15 4.96 6.15 86.38 0.53 5.49 16 6 N -0.76 -32.11 5.41 -343.45 -1.86 -33.96 16 7 C -0.24 -12.88 10.47 84.03 0.88 -12.00 16 8 H 0.05 3.19 8.06 -2.91 -0.02 3.16 16 9 C -0.07 -3.72 5.50 84.86 0.47 -3.26 16 10 N -0.99 -61.61 13.97 21.65 0.30 -61.31 16 11 Si 0.96 42.74 27.73 68.60 1.90 44.64 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 14 H -0.24 -9.19 6.52 99.48 0.65 -8.54 16 15 N -0.70 -10.56 4.53 -442.53 -2.00 -12.57 16 16 C 0.50 9.39 6.91 87.66 0.61 10.00 16 17 O -0.57 -16.74 16.24 -3.01 -0.05 -16.79 16 18 C 0.11 1.32 4.16 44.51 0.19 1.51 16 19 H 0.17 0.48 8.14 -2.39 -0.02 0.46 16 20 C 0.10 1.17 7.70 86.64 0.67 1.83 16 21 N -0.73 -12.94 6.37 -477.06 -3.04 -15.98 16 22 C 0.70 17.38 8.92 179.47 1.60 18.98 16 23 O -0.64 -22.22 18.05 -4.00 -0.07 -22.29 16 24 N -0.71 -13.31 5.64 -459.90 -2.60 -15.91 16 25 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.04 1.12 7.75 -2.38 -0.02 1.10 16 32 H 0.37 14.49 5.53 -92.71 -0.51 13.98 16 33 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 34 H 0.42 3.80 8.60 -92.71 -0.80 3.00 16 35 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.08 1.18 7.72 -2.39 -0.02 1.16 16 37 H 0.44 6.58 8.96 -92.71 -0.83 5.75 16 38 H 0.44 7.53 8.96 -92.71 -0.83 6.70 16 Total: -1.00 -84.21 322.04 -3.44 -87.66 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: -1.91 Total: 25.17 kcal Atomic # 6 Polarization: 15.46 SS G_CDS: 5.88 Total: 21.34 kcal Atomic # 7 Polarization: -130.53 SS G_CDS: -9.20 Total: -139.73 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -0.12 Total: -39.09 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.90 Total: 44.64 kcal Total: -84.21 -3.44 -87.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320528375.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.640 kcal (2) G-P(sol) polarization free energy of solvation -84.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds