Wall clock time and date at job start Mon Mar 30 2020 01:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34775 * 119.99851 * 2 1 4 4 O 1.21588 * 120.00351 * 0.02562 * 3 2 1 5 5 N 1.34773 * 119.99872 * 179.97438 * 3 2 1 6 6 C 1.46507 * 120.00131 * 179.97438 * 5 3 2 7 7 C 1.50696 * 109.47193 * 180.02562 * 6 5 3 8 8 O 1.21276 * 120.00259 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99574 * 180.02562 * 7 6 5 10 10 C 1.47018 * 125.65051 * 359.97072 * 9 7 6 11 11 C 1.54325 * 107.26791 * 178.98919 * 10 9 7 12 12 C 1.55156 * 102.94629 * 337.80770 * 11 10 9 13 13 H 1.09003 * 111.00111 * 277.39436 * 12 11 10 14 14 N 1.46490 * 111.00784 * 153.57711 * 12 11 10 15 15 C 1.36935 * 120.00121 * 86.45040 * 14 12 11 16 16 H 1.07997 * 120.00139 * 0.02562 * 15 14 12 17 17 C 1.38816 * 120.00401 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99569 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00172 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47055 * 180.02562 * 19 17 15 21 21 H 1.48505 * 109.46653 * 299.99639 * 19 17 15 22 22 H 1.48495 * 109.47483 * 60.00002 * 19 17 15 23 23 C 1.47428 * 125.64293 * 180.02562 * 9 7 6 24 24 H 1.09001 * 109.47533 * 300.00175 * 1 2 3 25 25 H 1.08999 * 109.47445 * 59.99801 * 1 2 3 26 26 H 1.09000 * 109.47220 * 179.97438 * 1 2 3 27 27 H 0.96995 * 120.00118 * 180.02562 * 2 1 3 28 28 H 0.96992 * 120.00574 * 0.02562 * 5 3 2 29 29 H 1.08998 * 109.47183 * 59.99962 * 6 5 3 30 30 H 1.08998 * 109.47260 * 300.00249 * 6 5 3 31 31 H 1.09001 * 109.88396 * 59.57494 * 10 9 7 32 32 H 1.08997 * 110.01525 * 298.47832 * 10 9 7 33 33 H 1.09006 * 110.71936 * 219.44530 * 11 10 9 34 34 H 1.08998 * 110.72187 * 96.17134 * 11 10 9 35 35 H 0.97000 * 120.00577 * 266.45640 * 14 12 11 36 36 H 0.97001 * 119.99885 * 359.97438 * 18 17 15 37 37 H 1.09009 * 110.36455 * 85.24758 * 23 9 7 38 38 H 1.09000 * 110.36736 * 322.92371 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2202 0.0005 5 7 3.4865 1.1672 0.0005 6 6 4.2191 2.4360 0.0000 7 6 5.7007 2.1606 0.0001 8 8 6.1050 1.0172 0.0001 9 7 6.5765 3.1851 0.0001 10 6 6.2252 4.6127 -0.0005 11 6 7.5465 5.4096 0.0258 12 6 8.5570 4.3880 0.6109 13 1 8.5027 4.3643 1.6993 14 7 9.9202 4.6818 0.1622 15 6 10.6922 5.5744 0.8567 16 1 10.2963 6.0615 1.7355 17 6 11.9838 5.8533 0.4312 18 7 12.4662 5.2600 -0.6401 19 14 13.0371 7.0704 1.3791 20 1 14.3644 7.1915 0.7242 21 1 12.3696 8.3969 1.3928 22 1 13.2144 6.5910 2.7733 23 6 8.0454 3.0597 -0.0003 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.9500 -0.8400 -0.0004 28 1 3.9716 0.3273 0.0005 29 1 3.9554 3.0082 0.8894 30 1 3.9561 3.0070 -0.8905 31 1 5.6321 4.8490 0.8830 32 1 5.6623 4.8580 -0.9011 33 1 7.4587 6.2805 0.6755 34 1 7.8379 5.7066 -0.9816 35 1 10.2760 4.2441 -0.6269 36 1 11.9193 4.6277 -1.1321 37 1 8.4159 2.9433 -1.0188 38 1 8.3542 2.2149 0.6155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480615473.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:18 Heat of formation + Delta-G solvation = -43.147397 kcal Electronic energy + Delta-G solvation = -20312.397235 eV Core-core repulsion = 16997.544810 eV Total energy + Delta-G solvation = -3314.852424 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.148 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.50856 -39.67270 -37.58792 -34.96467 -34.55152 -34.51317 -31.76278 -29.61452 -29.13469 -27.42366 -25.78518 -23.47292 -22.92108 -21.16736 -20.36690 -19.68177 -18.83625 -17.56018 -16.85876 -16.74974 -16.42018 -15.74440 -15.38681 -14.81217 -14.66323 -14.46185 -13.89021 -13.72372 -13.53767 -13.36182 -12.86776 -12.72469 -12.56680 -12.46507 -12.16760 -11.77047 -11.12307 -10.78537 -10.70590 -10.55496 -10.34029 -10.05394 -10.01166 -9.63321 -9.28182 -9.16949 -9.01662 -8.64385 -7.17859 -6.19597 -3.22107 2.27599 2.45701 2.94319 3.01514 3.47771 3.50682 3.68400 4.01971 4.30411 4.59088 4.85365 4.88828 5.06501 5.13139 5.16367 5.20764 5.27003 5.41972 5.46066 5.52119 5.61932 5.80559 5.91127 6.03077 6.08154 6.10866 6.21373 6.34223 6.47315 6.59957 6.75968 7.45580 7.70738 7.71157 7.98166 8.31016 8.65457 9.09116 9.95781 10.08696 11.28188 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.062887 B = 0.002907 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.137479 B = 9629.718249 C = 9880.118212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.751 5.751 3 C 0.706 3.294 4 O -0.592 6.592 5 N -0.734 5.734 6 C 0.126 3.874 7 C 0.522 3.478 8 O -0.546 6.546 9 N -0.606 5.606 10 C 0.096 3.904 11 C -0.154 4.154 12 C 0.177 3.823 13 H 0.065 0.935 14 N -0.726 5.726 15 C -0.337 4.337 16 H 0.067 0.933 17 C -0.041 4.041 18 N -0.940 5.940 19 Si 1.081 2.919 20 H -0.284 1.284 21 H -0.294 1.294 22 H -0.294 1.294 23 C 0.099 3.901 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.399 0.601 28 H 0.408 0.592 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.369 0.631 36 H 0.256 0.744 37 H 0.069 0.931 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.840 -8.379 1.094 22.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.406 5.406 3 C 0.405 3.595 4 O -0.470 6.470 5 N -0.393 5.393 6 C -0.003 4.003 7 C 0.309 3.691 8 O -0.424 6.424 9 N -0.340 5.340 10 C -0.027 4.027 11 C -0.195 4.195 12 C 0.065 3.935 13 H 0.083 0.917 14 N -0.368 5.368 15 C -0.467 4.467 16 H 0.085 0.915 17 C -0.239 4.239 18 N -0.584 5.584 19 Si 0.911 3.089 20 H -0.210 1.210 21 H -0.221 1.221 22 H -0.222 1.222 23 C -0.024 4.024 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.233 0.767 28 H 0.245 0.755 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.203 0.797 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.786 -7.200 1.349 21.098 hybrid contribution -1.067 -1.535 -0.326 1.897 sum -20.853 -8.734 1.023 22.631 Atomic orbital electron populations 1.21400 0.77958 1.02004 1.02341 1.44873 1.07809 1.07150 1.80779 1.15828 0.81355 0.84418 0.77879 1.90938 1.67930 1.30237 1.57925 1.44747 1.04662 1.09761 1.80142 1.20837 0.88034 0.86568 1.04811 1.20074 0.87811 0.84406 0.76773 1.90684 1.79742 1.20764 1.51258 1.48344 1.07455 1.06532 1.71671 1.22221 0.99276 0.79828 1.01410 1.23402 0.93576 0.99432 1.03089 1.21234 0.85587 0.89668 0.97026 0.91674 1.42257 1.09928 1.51869 1.32746 1.20000 0.97496 1.19651 1.09572 0.91510 1.25832 0.95479 1.03108 0.99522 1.70896 1.39033 1.30063 1.18427 0.83231 0.76203 0.74869 0.74568 1.20987 1.22146 1.22158 1.22578 0.77884 1.00298 1.01626 0.92314 0.92332 0.90618 0.76749 0.75481 0.88420 0.88484 0.91305 0.91455 0.90405 0.90565 0.79674 0.93303 0.91287 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.69 10.70 59.85 0.64 1.33 16 2 N -0.75 -6.01 5.72 -72.07 -0.41 -6.42 16 3 C 0.71 8.31 8.57 -86.92 -0.74 7.56 16 4 O -0.59 -9.14 16.34 5.29 0.09 -9.05 16 5 N -0.73 -8.07 5.53 -66.41 -0.37 -8.44 16 6 C 0.13 1.43 5.35 -5.19 -0.03 1.41 16 7 C 0.52 7.31 7.92 -10.98 -0.09 7.22 16 8 O -0.55 -9.12 15.92 5.56 0.09 -9.03 16 9 N -0.61 -8.66 3.33 -170.52 -0.57 -9.23 16 10 C 0.10 1.18 6.49 -3.07 -0.02 1.16 16 11 C -0.15 -2.40 6.65 -24.90 -0.17 -2.57 16 12 C 0.18 3.30 3.69 -65.79 -0.24 3.06 16 13 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 14 N -0.73 -17.23 5.28 -51.36 -0.27 -17.50 16 15 C -0.34 -9.04 9.98 -15.06 -0.15 -9.19 16 16 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 17 C -0.04 -1.16 5.50 -17.43 -0.10 -1.26 16 18 N -0.94 -28.30 13.70 55.49 0.76 -27.54 16 19 Si 1.08 25.15 29.92 -169.99 -5.09 20.06 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 23 C 0.10 1.66 6.53 -2.53 -0.02 1.64 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.40 2.10 8.84 -40.82 -0.36 1.74 16 28 H 0.41 4.15 7.45 -40.82 -0.30 3.85 16 29 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.37 9.08 6.54 -40.82 -0.27 8.81 16 36 H 0.26 7.56 6.77 -40.82 -0.28 7.28 16 37 H 0.07 1.19 8.00 -51.92 -0.42 0.77 16 38 H 0.08 1.38 8.04 -51.93 -0.42 0.96 16 LS Contribution 323.30 15.07 4.87 4.87 Total: -1.00 -34.37 323.30 -7.28 -41.65 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -5.47 Total: 10.28 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: -0.91 Total: 10.37 kcal Atomic # 7 Polarization: -68.28 SS G_CDS: -0.86 Total: -69.14 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.17 Total: -18.09 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.09 Total: 20.06 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.37 -7.28 -41.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480615473.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.500 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds