Wall clock time and date at job start Mon Mar 30 2020 01:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 6 6 N 1.46496 * 109.46967 * 174.99636 * 5 3 2 7 7 C 1.34781 * 120.00112 * 179.97438 * 6 5 3 8 8 O 1.21279 * 119.99773 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00149 * 180.02562 * 7 6 5 10 10 H 1.09003 * 110.49232 * 40.70120 * 9 7 6 11 11 C 1.54107 * 110.54745 * 278.00247 * 9 7 6 12 12 N 1.47393 * 103.69928 * 241.44071 * 11 9 7 13 13 C 1.33943 * 109.21120 * 359.88706 * 12 11 9 14 14 O 1.21593 * 123.04076 * 180.02562 * 13 12 11 15 15 N 1.33946 * 113.92079 * 0.07397 * 13 12 11 16 16 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 17 17 C 1.36941 * 119.99583 * 85.00384 * 16 3 2 18 18 H 1.07999 * 120.00378 * 359.97438 * 17 16 3 19 19 C 1.38814 * 119.99657 * 179.97438 * 17 16 3 20 20 N 1.31616 * 120.00233 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99719 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47101 * 89.99948 * 21 19 17 23 23 H 1.48499 * 109.46824 * 209.99835 * 21 19 17 24 24 H 1.48496 * 109.46857 * 329.99662 * 21 19 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 1.09001 * 109.47277 * 294.99844 * 5 3 2 31 31 H 1.09008 * 109.47118 * 54.99823 * 5 3 2 32 32 H 0.97004 * 120.00126 * 0.02562 * 6 5 3 33 33 H 1.09001 * 110.55079 * 359.97438 * 11 9 7 34 34 H 1.08994 * 110.54905 * 122.81338 * 11 9 7 35 35 H 0.96997 * 125.37666 * 179.97438 * 12 11 9 36 36 H 0.97001 * 125.41392 * 179.97438 * 15 13 12 37 37 H 0.96999 * 120.00274 * 264.99733 * 16 3 2 38 38 H 0.97001 * 119.99757 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8168 0.0059 7 6 5.3856 3.0631 0.0868 8 8 6.1634 2.1485 0.2583 9 6 5.8981 4.4750 -0.0359 10 1 5.2480 5.1650 0.5020 11 6 6.0112 4.8824 -1.5178 12 7 7.4477 5.1607 -1.6947 13 6 8.0819 4.9602 -0.5321 14 8 9.2796 5.1183 -0.3944 15 7 7.2776 4.5688 0.4649 16 7 1.6525 2.0974 -1.2519 17 6 0.4156 2.6734 -1.3689 18 1 -0.2743 2.6446 -0.5385 19 6 0.0486 3.2944 -2.5549 20 7 0.8896 3.3300 -3.5668 21 14 -1.6383 4.0807 -2.7143 22 1 -1.5656 5.5000 -2.2834 23 1 -2.0832 4.0153 -4.1296 24 1 -2.6071 3.3520 -1.8567 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8499 1.0378 1.0961 31 1 3.9954 0.8311 -0.6659 32 1 3.4409 3.5484 -0.1309 33 1 5.6971 4.0634 -2.1649 34 1 5.4193 5.7762 -1.7151 35 1 7.8670 5.4452 -2.5219 36 1 7.5601 4.3772 1.3728 37 1 2.2720 2.1231 -1.9978 38 1 0.6332 3.7642 -4.3954 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481845377.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:27 Heat of formation + Delta-G solvation = -74.068894 kcal Electronic energy + Delta-G solvation = -21066.270676 eV Core-core repulsion = 17750.077395 eV Total energy + Delta-G solvation = -3316.193281 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.148 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.31532 -40.34188 -38.27812 -37.30495 -35.24659 -34.10474 -34.00711 -31.50105 -30.75393 -28.94114 -25.77342 -24.87615 -23.62173 -22.83024 -21.66742 -21.20030 -19.35652 -18.95842 -18.43224 -17.44021 -17.01214 -16.88595 -16.47416 -16.15666 -15.69644 -15.39217 -15.10396 -15.04433 -14.69267 -14.49512 -14.22469 -13.86284 -13.75613 -13.21705 -12.92806 -12.73420 -12.69718 -12.33061 -12.08034 -11.83053 -11.59993 -11.58304 -11.33173 -11.26699 -10.84092 -10.55872 -10.01691 -9.84511 -8.90770 -7.81929 -5.07852 1.43810 1.54654 1.58397 1.63092 1.71433 1.98327 2.27490 2.65215 3.03316 3.33030 3.52003 3.65900 3.94464 4.00542 4.02358 4.35994 4.43430 4.53342 4.60450 4.63358 4.70198 4.80845 4.93092 5.14832 5.17197 5.24888 5.49249 5.60947 5.68859 5.75613 5.90034 6.20307 6.25536 6.38853 6.59711 7.20605 7.48020 7.51009 8.18876 8.44290 9.40594 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.019861 B = 0.004873 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.447227 B = 5745.136814 C = 6863.691322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 C 0.166 3.834 4 H 0.063 0.937 5 C 0.122 3.878 6 N -0.698 5.698 7 C 0.500 3.500 8 O -0.578 6.578 9 C 0.109 3.891 10 H 0.158 0.842 11 C 0.105 3.895 12 N -0.729 5.729 13 C 0.697 3.303 14 O -0.638 6.638 15 N -0.710 5.710 16 N -0.725 5.725 17 C -0.214 4.214 18 H 0.079 0.921 19 C -0.066 4.066 20 N -0.964 5.964 21 Si 0.952 3.048 22 H -0.288 1.288 23 H -0.309 1.309 24 H -0.276 1.276 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.417 0.583 33 H 0.083 0.917 34 H 0.133 0.867 35 H 0.439 0.561 36 H 0.436 0.564 37 H 0.374 0.626 38 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.812 2.416 7.859 9.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C 0.057 3.943 4 H 0.081 0.919 5 C -0.003 4.003 6 N -0.349 5.349 7 C 0.285 3.715 8 O -0.458 6.458 9 C -0.001 4.001 10 H 0.175 0.825 11 C -0.020 4.020 12 N -0.392 5.392 13 C 0.396 3.604 14 O -0.520 6.520 15 N -0.371 5.371 16 N -0.366 5.366 17 C -0.346 4.346 18 H 0.097 0.903 19 C -0.258 4.258 20 N -0.615 5.615 21 Si 0.784 3.216 22 H -0.216 1.216 23 H -0.236 1.236 24 H -0.201 1.201 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.254 0.746 33 H 0.101 0.899 34 H 0.151 0.849 35 H 0.282 0.718 36 H 0.278 0.722 37 H 0.206 0.794 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.719 1.897 8.104 9.568 hybrid contribution -0.835 0.432 -0.878 1.286 sum 3.884 2.329 7.226 8.528 Atomic orbital electron populations 1.21699 0.96070 1.00440 1.01851 1.22012 0.96545 0.97789 1.00899 1.20697 0.90855 0.93013 0.89748 0.91882 1.21562 0.94324 0.82946 1.01420 1.45896 1.06842 1.10795 1.71400 1.21151 0.82463 0.91532 0.76397 1.90715 1.56931 1.47322 1.50809 1.22058 0.86091 0.94424 0.97483 0.82521 1.22542 0.82515 1.04205 0.92767 1.45127 1.09217 1.73157 1.11690 1.16112 0.84389 0.77657 0.82280 1.90942 1.14249 1.62329 1.84471 1.44799 1.07216 1.72168 1.12892 1.42550 1.15765 1.65949 1.12337 1.19459 0.92592 1.25129 0.97412 0.90333 1.25242 1.00403 1.03490 0.96691 1.69771 1.36564 1.50911 1.04266 0.85455 0.81666 0.78706 0.75783 1.21556 1.23624 1.20114 0.93219 0.93202 0.93121 0.90899 0.93774 0.90297 0.93266 0.74565 0.89914 0.84929 0.71757 0.72158 0.79358 0.94468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.45 9.18 71.98 0.66 -3.79 16 2 C -0.13 -3.88 5.61 30.60 0.17 -3.71 16 3 C 0.17 5.10 2.59 44.99 0.12 5.22 16 4 H 0.06 1.89 8.08 -2.39 -0.02 1.87 16 5 C 0.12 3.41 5.23 86.38 0.45 3.86 16 6 N -0.70 -17.57 5.39 -463.06 -2.49 -20.06 16 7 C 0.50 12.97 6.94 87.66 0.61 13.58 16 8 O -0.58 -20.01 16.58 -3.03 -0.05 -20.06 16 9 C 0.11 2.07 4.16 44.51 0.19 2.25 16 10 H 0.16 1.77 8.14 -2.39 -0.02 1.75 16 11 C 0.10 1.87 7.72 86.58 0.67 2.54 16 12 N -0.73 -15.69 6.39 -476.59 -3.04 -18.74 16 13 C 0.70 19.85 8.92 179.57 1.60 21.45 16 14 O -0.64 -23.74 18.05 -4.01 -0.07 -23.82 16 15 N -0.71 -16.47 5.62 -460.33 -2.59 -19.05 16 16 N -0.73 -28.91 4.51 -322.93 -1.46 -30.37 16 17 C -0.21 -9.73 7.75 84.03 0.65 -9.07 16 18 H 0.08 3.46 7.32 -2.91 -0.02 3.44 16 19 C -0.07 -3.26 5.50 84.86 0.47 -2.80 16 20 N -0.96 -51.85 13.06 21.65 0.28 -51.57 16 21 Si 0.95 41.34 29.55 68.60 2.03 43.37 16 22 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 23 H -0.31 -14.13 7.11 99.48 0.71 -13.42 16 24 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 25 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.05 1.91 5.99 -2.39 -0.01 1.89 16 27 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.42 9.99 8.14 -92.71 -0.75 9.23 16 33 H 0.08 1.71 7.72 -2.39 -0.02 1.69 16 34 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.44 7.90 8.96 -92.71 -0.83 7.07 16 36 H 0.44 9.32 8.96 -92.71 -0.83 8.49 16 37 H 0.37 16.67 7.80 -92.71 -0.72 15.95 16 38 H 0.25 13.24 8.31 -92.71 -0.77 12.47 16 Total: -1.00 -67.91 320.49 -3.83 -71.74 By element: Atomic # 1 Polarization: 41.07 SS G_CDS: -2.02 Total: 39.05 kcal Atomic # 6 Polarization: 23.94 SS G_CDS: 5.58 Total: 29.52 kcal Atomic # 7 Polarization: -130.50 SS G_CDS: -9.30 Total: -139.79 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -0.12 Total: -43.87 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -67.91 -3.83 -71.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481845377.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.333 kcal (2) G-P(sol) polarization free energy of solvation -67.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds