Wall clock time and date at job start Mon Mar 30 2020 01:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47429 * 2 1 4 4 N 1.46503 * 109.47215 * 239.99809 * 2 1 3 5 5 C 1.34773 * 120.00059 * 84.99931 * 4 2 1 6 6 N 1.34773 * 120.00448 * 179.97438 * 5 4 2 7 7 O 1.21591 * 119.99723 * 0.02562 * 5 4 2 8 8 C 1.50699 * 109.46909 * 120.00096 * 2 1 3 9 9 O 1.21288 * 120.00098 * 120.00002 * 8 2 1 10 10 N 1.34775 * 120.00209 * 299.99664 * 8 2 1 11 11 C 1.46496 * 120.00509 * 180.02562 * 10 8 2 12 12 C 1.53000 * 109.47194 * 174.42698 * 11 10 8 13 13 N 1.46493 * 115.55025 * 324.36095 * 12 11 10 14 14 C 1.36939 * 120.00007 * 295.00418 * 13 12 11 15 15 H 1.08001 * 120.00336 * 356.88756 * 14 13 12 16 16 C 1.38814 * 120.00249 * 176.88709 * 14 13 12 17 17 N 1.31621 * 119.99789 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00157 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47262 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47566 * 119.99844 * 18 16 14 21 21 H 1.48500 * 109.47272 * 239.99768 * 18 16 14 22 22 C 1.53000 * 117.50110 * 110.03395 * 12 11 10 23 23 C 1.52999 * 117.49598 * 178.69479 * 12 11 10 24 24 H 1.09005 * 109.46925 * 60.00116 * 1 2 3 25 25 H 1.09000 * 109.47055 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46967 * 300.00656 * 1 2 3 27 27 H 0.96998 * 119.99812 * 265.00485 * 4 2 1 28 28 H 0.97003 * 119.99780 * 0.02562 * 6 5 4 29 29 H 0.97005 * 120.00726 * 179.97438 * 6 5 4 30 30 H 0.97005 * 119.99432 * 0.02562 * 10 8 2 31 31 H 1.08992 * 109.47087 * 54.41918 * 11 10 8 32 32 H 1.09007 * 109.46554 * 294.42380 * 11 10 8 33 33 H 0.96998 * 119.99963 * 115.28088 * 13 12 11 34 34 H 0.96997 * 120.00046 * 179.97438 * 17 16 14 35 35 H 1.08993 * 117.50048 * 214.99848 * 22 12 11 36 36 H 1.08996 * 117.49730 * 0.02562 * 22 12 11 37 37 H 1.09005 * 117.50138 * 359.97071 * 23 12 11 38 38 H 1.09006 * 117.49698 * 144.96933 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1471 -0.0184 -2.3571 6 7 2.5968 -0.6535 -3.4574 7 8 1.8583 1.1615 -2.4116 8 6 2.0323 -0.7104 1.2305 9 8 2.7296 -1.6966 1.1192 10 7 1.7068 -0.2500 2.4546 11 6 2.1954 -0.9402 3.6507 12 6 1.8029 -0.1426 4.8960 13 7 1.8243 1.3145 4.7457 14 6 3.0083 1.9614 4.5118 15 1 3.9329 1.4037 4.4880 16 6 3.0203 3.3340 4.3051 17 7 1.8935 4.0136 4.3335 18 14 4.6354 4.2163 3.9852 19 1 5.7484 3.2334 4.0033 20 1 4.5824 4.8803 2.6580 21 1 4.8595 5.2367 5.0406 22 6 0.7341 -0.7428 5.8116 23 6 2.1983 -0.7183 6.2573 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 2.2490 -1.6318 -1.1526 28 1 2.8276 -1.5947 -3.4139 29 1 2.6892 -0.1698 -4.2932 30 1 1.1488 0.5385 2.5435 31 1 3.2808 -1.0272 3.6021 32 1 1.7531 -1.9352 3.7022 33 1 1.0003 1.8214 4.8160 34 1 1.9019 4.9728 4.1895 35 1 0.0469 -0.0536 6.3021 36 1 0.3109 -1.7061 5.5270 37 1 2.7377 -1.6655 6.2658 38 1 2.4747 -0.0128 7.0410 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670772238.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:54 Heat of formation + Delta-G solvation = -32.211733 kcal Electronic energy + Delta-G solvation = -21135.710425 eV Core-core repulsion = 17821.332207 eV Total energy + Delta-G solvation = -3314.378218 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.148 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.23494 -39.06916 -37.53606 -34.79892 -33.86066 -33.60260 -33.12737 -30.20300 -29.70679 -26.61875 -24.11937 -23.90190 -21.89494 -21.09687 -19.92586 -19.27002 -18.49498 -17.55749 -17.12159 -16.20181 -15.98714 -15.52667 -14.94997 -14.75143 -14.45431 -14.26615 -13.85628 -13.70496 -13.18044 -13.09678 -12.83703 -12.29023 -12.15347 -11.89816 -11.49472 -11.02674 -10.96229 -10.93768 -10.38169 -10.28834 -10.22701 -9.79897 -9.75462 -9.57978 -9.38590 -9.06002 -8.90594 -8.50083 -7.14916 -5.88902 -3.20343 2.75579 2.90021 3.23403 3.39286 3.47015 3.47967 3.65823 4.37471 4.46274 4.53660 4.97948 5.17456 5.19234 5.26859 5.32880 5.47134 5.52583 5.69865 5.85355 5.87119 6.09342 6.13802 6.20350 6.33520 6.40742 6.45207 6.57273 6.66184 6.74368 6.85263 6.92698 7.67441 7.92262 7.99812 8.28616 8.54660 8.62402 9.40954 9.91520 10.27201 11.32545 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.014627 B = 0.006049 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.759319 B = 4627.470714 C = 5851.760179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.142 3.858 3 H 0.118 0.882 4 N -0.725 5.725 5 C 0.707 3.293 6 N -0.868 5.868 7 O -0.593 6.593 8 C 0.510 3.490 9 O -0.560 6.560 10 N -0.689 5.689 11 C 0.152 3.848 12 C 0.127 3.873 13 N -0.689 5.689 14 C -0.238 4.238 15 H 0.072 0.928 16 C -0.006 4.006 17 N -0.929 5.929 18 Si 0.904 3.096 19 H -0.280 1.280 20 H -0.290 1.290 21 H -0.291 1.291 22 C -0.185 4.185 23 C -0.192 4.192 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.404 0.596 28 H 0.396 0.604 29 H 0.414 0.586 30 H 0.412 0.588 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.389 0.611 34 H 0.257 0.743 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.162 -12.325 -8.333 15.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.033 3.967 3 H 0.136 0.864 4 N -0.383 5.383 5 C 0.405 3.595 6 N -0.436 5.436 7 O -0.471 6.471 8 C 0.294 3.706 9 O -0.440 6.440 10 N -0.340 5.340 11 C 0.026 3.974 12 C 0.033 3.967 13 N -0.329 5.329 14 C -0.369 4.369 15 H 0.090 0.910 16 C -0.203 4.203 17 N -0.577 5.577 18 Si 0.735 3.265 19 H -0.205 1.205 20 H -0.216 1.216 21 H -0.218 1.218 22 C -0.223 4.223 23 C -0.232 4.232 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.240 0.760 28 H 0.224 0.776 29 H 0.245 0.755 30 H 0.250 0.750 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.224 0.776 34 H 0.067 0.933 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.794 -11.900 -8.292 14.771 hybrid contribution 0.730 0.452 -0.283 0.904 sum -2.064 -11.448 -8.575 14.452 Atomic orbital electron populations 1.22130 0.93070 1.02576 1.03846 1.20607 0.95361 0.98184 0.82559 0.86435 1.44766 1.71216 1.14280 1.08016 1.15895 0.78077 0.84887 0.80636 1.42931 1.73782 1.14891 1.12030 1.90993 1.57239 1.14208 1.84642 1.20408 0.80479 0.84641 0.85043 1.90631 1.39154 1.27256 1.86918 1.45696 1.52064 1.31835 1.04398 1.21094 0.99326 0.93483 0.83515 1.20205 1.01242 0.86348 0.88890 1.41814 1.08351 0.97737 1.84964 1.19167 0.86381 0.90176 1.41130 0.91050 1.24729 0.96925 0.96478 1.02148 1.69647 1.24581 1.07330 1.56108 0.86161 0.83037 0.79696 0.77583 1.20507 1.21641 1.21793 1.23191 0.92542 1.01651 1.04912 1.23373 0.96625 1.02159 1.01066 0.90946 0.92166 0.90531 0.75997 0.77594 0.75458 0.75018 0.91472 0.92287 0.77626 0.93330 0.89049 0.89394 0.89925 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.38 37.16 0.35 -1.65 16 2 C 0.14 2.14 2.98 -69.08 -0.21 1.93 16 3 H 0.12 2.03 7.58 -51.93 -0.39 1.63 16 4 N -0.73 -9.67 4.96 -59.81 -0.30 -9.97 16 5 C 0.71 9.90 8.80 -86.92 -0.77 9.13 16 6 N -0.87 -7.74 8.88 27.63 0.25 -7.49 16 7 O -0.59 -10.95 16.84 5.29 0.09 -10.86 16 8 C 0.51 8.59 7.22 -10.99 -0.08 8.51 16 9 O -0.56 -10.46 15.83 5.55 0.09 -10.37 16 10 N -0.69 -11.83 5.29 -60.30 -0.32 -12.15 16 11 C 0.15 2.65 5.69 -4.04 -0.02 2.62 16 12 C 0.13 2.32 2.46 -131.82 -0.32 1.99 16 13 N -0.69 -15.49 4.49 -47.24 -0.21 -15.70 16 14 C -0.24 -6.14 9.81 -15.06 -0.15 -6.29 16 15 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 16 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 17 N -0.93 -26.40 13.06 55.49 0.72 -25.67 16 18 Si 0.90 22.11 29.55 -169.99 -5.02 17.08 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 22 C -0.19 -2.83 10.11 -26.69 -0.27 -3.10 16 23 C -0.19 -3.18 10.18 -26.69 -0.27 -3.45 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.08 0.94 7.56 -51.93 -0.39 0.54 16 27 H 0.40 4.76 7.80 -40.82 -0.32 4.44 16 28 H 0.40 2.34 8.84 -40.82 -0.36 1.98 16 29 H 0.41 3.14 8.93 -40.82 -0.36 2.78 16 30 H 0.41 7.28 7.20 -40.82 -0.29 6.98 16 31 H 0.07 1.29 8.13 -51.93 -0.42 0.86 16 32 H 0.06 0.92 7.91 -51.92 -0.41 0.51 16 33 H 0.39 9.30 8.03 -40.82 -0.33 8.98 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.09 1.15 8.06 -51.93 -0.42 0.73 16 37 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 LS Contribution 329.25 15.07 4.96 4.96 Total: -1.00 -32.12 329.25 -6.94 -39.06 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: -5.36 Total: 21.69 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: -1.83 Total: 9.43 kcal Atomic # 7 Polarization: -71.14 SS G_CDS: 0.14 Total: -70.99 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: 0.18 Total: -21.23 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.12 -6.94 -39.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670772238.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.847 kcal (2) G-P(sol) polarization free energy of solvation -32.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds